diff --git a/runs/isoseq/ccs/keep.ccs.report b/runs/isoseq/ccs/keep.ccs.report new file mode 100644 index 0000000000000000000000000000000000000000..2d9ba82f117b52cad9959e35a7e0d241e7c766b2 --- /dev/null +++ b/runs/isoseq/ccs/keep.ccs.report @@ -0,0 +1,23 @@ +ZMW Yield +Success -- CCS generated,38938,49.87% +Failed -- Below SNR threshold,24988,32.00% +Failed -- No usable subreads,4190,5.37% +Failed -- Insert size too long,3,0.02% +Failed -- Insert size too small,13,0.02% +Failed -- Not enough full passes,9955,12.75% +Failed -- Too many unusable subreads,0,0.00% +Failed -- CCS did not converge,0,0.00% +Failed -- CCS below minimum predicted accuracy,0,0.00% +Failed -- Unknown error during processing,0,0.00% + + +Subread Yield +Success - Used for CCS,718868,64.98% +Failed -- Below SNR threshold,338423,30.59% +Failed -- Alpha/Beta mismatch,0,0.00% +Failed -- Below minimum quality,15973,1.44% +Failed -- Filtered by size,19811,1.79% +Failed -- Identity too low,0,0.00% +Failed -- Z-Score too low,0,0.00% +Failed -- From ZMW with too few passes,13085,1.18% +Failed -- Other,167,0.02% diff --git a/runs/isoseq/ccs/m16.ccs.bam b/runs/isoseq/ccs/m16.ccs.bam new file mode 100644 index 0000000000000000000000000000000000000000..ce58247eb0bb6a89bcfb952391f41c682c21e4e3 Binary files /dev/null and b/runs/isoseq/ccs/m16.ccs.bam differ diff --git a/runs/isoseq/ccs/m16.ccs.bam.pbi b/runs/isoseq/ccs/m16.ccs.bam.pbi new file mode 100644 index 0000000000000000000000000000000000000000..f89ba1f3386e663fe4c948cce680ae66add6108f Binary files /dev/null and b/runs/isoseq/ccs/m16.ccs.bam.pbi differ diff --git a/runs/isoseq/subreads/m161031_124550_42199_c100941222550000001823217706101620_s1_X0.subreads.bam b/runs/isoseq/subreads/m161031_124550_42199_c100941222550000001823217706101620_s1_X0.subreads.bam new file mode 100644 index 0000000000000000000000000000000000000000..de05eb46705d569644cb905384792f780f57acda Binary files /dev/null and b/runs/isoseq/subreads/m161031_124550_42199_c100941222550000001823217706101620_s1_X0.subreads.bam differ