diff --git a/_reader/RNAseqWorkshop.pdf b/_reader/RNAseqWorkshop.pdf index cb58970bab7087441631133a445aa8af56be043d..880d75f5b3142d42f261f281882ed0a52cba3ba8 100644 Binary files a/_reader/RNAseqWorkshop.pdf and b/_reader/RNAseqWorkshop.pdf differ diff --git a/_reader/sections/01_section_linux.tex b/_reader/sections/01_section_linux.tex index a8d6ac681566b2f447f5a4b1e5cf2d01eda3bf55..1a849576bc82708907da7bd44cb7502fa23e56a3 100644 --- a/_reader/sections/01_section_linux.tex +++ b/_reader/sections/01_section_linux.tex @@ -390,7 +390,7 @@ of the course we'll use a second Docker container for this. \begin{itemize} -\item acquire the \il{rstudio_docker.tar} file from sciebo or the ``Raumlaufwereke" folder (as before) +\item acquire the \il{rstudio_docker.tar} file from sciebo or the ``Raumlaufwerke" folder (as before) \item on the \emph{host} machine, open a new terminal \item run the following \end{itemize} @@ -435,7 +435,7 @@ library(ggplot2) Let's assume you have an Excel file and want to do something to it using R. First, always, always use tab-delimited text files to move from program to program, no matter which programs you use. Look at -the small tab-delimited txt file in the \$HOME/rnaseq-workshop/\_WorkshopReader/intro\_scripts\_data called "example\_table.txt" +the small tab-delimited txt file in the \$HOME/rnaseq-workshop/\_reader/intro\_scripts\_data called "example\_table.txt" using a text editor (e.g. `gedit') or LibreOffice Calc (which is just like Excel except free, open source, and Linux compatible). Next we'll import this into R \begin{lstlisting} diff --git a/_slides/slides01_housekeeping.pdf b/_slides/slides01_housekeeping.pdf new file mode 100644 index 0000000000000000000000000000000000000000..e07e1c3c2664b5d410a890a5400735fcaae01123 Binary files /dev/null and b/_slides/slides01_housekeeping.pdf differ diff --git a/_slides/slides03_experimental.pdf b/_slides/slides03_experimental.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ea873865ff72d2dcca3b6ccc61d26bbc861340fa Binary files /dev/null and b/_slides/slides03_experimental.pdf differ diff --git a/_slides/slides04_quantification.pdf b/_slides/slides04_quantification.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8a7433077b9a2466df518253ecf3984c2041ddd3 Binary files /dev/null and b/_slides/slides04_quantification.pdf differ