From 69c822da7ffdd3b11033dc2cbb4f35dfd0da0514 Mon Sep 17 00:00:00 2001
From: alisandra <alisandra.denton@hhu.de>
Date: Mon, 22 Aug 2022 09:13:20 +0200
Subject: [PATCH] finally tested hd5 fix for kallisto

---
 workflows/docker/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/docker/Dockerfile b/workflows/docker/Dockerfile
index 2cb3132..fc7805f 100644
--- a/workflows/docker/Dockerfile
+++ b/workflows/docker/Dockerfile
@@ -110,7 +110,7 @@ RUN git clone https://github.com/pachterlab/kallisto.git
 RUN mkdir kallisto/build
 WORKDIR /home/ZIM-gast/repos/kallisto/build
 ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/hdf5/serial/lib
-RUN cmake -DCMAKE_INSTALL_PREFIX=/home/ZIM-gast/ ..
+RUN cmake -DCMAKE_INSTALL_PREFIX=/home/ZIM-gast/ -DUSE_HDF5=ON ..
 RUN make
 RUN make install
 # python
-- 
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