diff --git a/workflows/rstudiodocker/Dockerfile b/workflows/rstudiodocker/Dockerfile index 690aac2d0fce9a105214e4b1062fe2ceb95d66f3..5e184d098f31f33ed558ad9552fe3a641579795f 100644 --- a/workflows/rstudiodocker/Dockerfile +++ b/workflows/rstudiodocker/Dockerfile @@ -1,7 +1,7 @@ FROM rocker/r-ver:latest -RUN useradd --create-home --shell /bin/bash ZIM-gast -RUN mkdir /home/ZIM-gast/rnaseq-workshop +RUN useradd --create-home --shell /bin/bash zim-gast +RUN mkdir /home/zim-gast/rnaseq-workshop LABEL org.opencontainers.image.licenses="GPL-2.0-or-later" \ org.opencontainers.image.source="https://github.com/rocker-org/rocker-versioned2" \ @@ -37,7 +37,7 @@ RUN Rscript -e "devtools::install_github('pachterlab/sleuth')" EXPOSE 8787 -WORKDIR /home/ZIM-gast/rnaseq-workshop +WORKDIR /home/zim-gast/rnaseq-workshop #CMD ["bash"] CMD ["/init"] diff --git a/workflows/rstudiodocker/instructions.md b/workflows/rstudiodocker/instructions.md index c5bbb49bca6127ba50a6f8b87bdb7c35ba12a28f..e2ad0fd422fafe7a6ccee25a728543328f138165 100644 --- a/workflows/rstudiodocker/instructions.md +++ b/workflows/rstudiodocker/instructions.md @@ -3,14 +3,14 @@ sudo docker build -t rstudio --rm . ``` ``` -sudo docker run --rm -p 8787:8787 -e PASSWORD=rstudio --mount type=bind,source=${PWD}/rnaseq-workshop,target=/home/ZIM-gast/rnaseq-workshop rstudio +sudo docker run --rm -p 8787:8787 -e PASSWORD=rstudio --mount type=bind,source=${PWD}/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rstudio ``` Then go to 'localhost:8787' in the browser on the host machine. username and password are both 'rstudio'. -once rstudio is open, you will need to run `setwd('/home/ZIM-gast/rnaseq-workshop/')` +once rstudio is open, you will need to run `setwd('/home/zim-gast/rnaseq-workshop/')` To create tar