diff --git a/_slides/announcement.md b/_slides/announcement.md new file mode 100644 index 0000000000000000000000000000000000000000..fa572060ce286413fdca8b68bc887fe3b0ec601d --- /dev/null +++ b/_slides/announcement.md @@ -0,0 +1,53 @@ +# CEPLAS RNA-Seq Workshop + +## Key dates + +- **Date**: August 22-24, 2022 +- **Tutors**: [Alisandra Denton](https://www.ceplas.eu/en/research/people/dr-alisandra-denton/) and [Dominik Brilhaus](https://www.ceplas.eu/en/research/data-science-and-data-management/) +- **Location**: Building 25.41. Room 00.41 ([at ZIM HHU, Düsseldorf](https://www.zim.hhu.de/ueber-uns/lageplan-und-anreiseskizze)) +- **Prerequisites** + - Technical + - Computers incl. required software and course material are provided during the course. + - Participants *can* bring own laptops, but without guarantee (possible system-specific dependencies) + - Expertise + - Some pre-knowledge in programming may help, but is not required. + - First (half) day will be an optional introduction. + +## Schedule + +| Time | Section | +|:----------- | -------:| +| 9:00 | Start | +| 10:00-10:20 | Coffee | +| 12:00-13:00 | Lunch | +| 15:00-15:20 | Coffee | +| ~17:00 | End | + +## Topics (*preliminary*) + +- *[Optional, if needed]* Basic introduction to tools and programming (e.g. with Linux/Bash, R, Python) + +- Introduction to read processing and quality control + +- Introduction to read mapping and quantification + +- Long and short reads + - Transcriptome assembly + +- Post-mapping analysis + - Differential gene expression + - Clustering + - Functional annotation and enrichment + - Visualization + +## Registration + +- **Participants**: + - CEPLAS researchers of all levels + - Open to non-CEPLAS researchers, if max. participant number is not reached + - min. / max. participants: 10 / 20 +- **Registration phase**: June 27th - July 20th + +- **Topic wishlist**: If you would like to learn about specific topics or tools related to RNA-Seq data analysis, please raise them during the registration. + +- **Basic Intro**: Please let us know your programming expertise and wether you interested in a basic introduction to programming.