From d30ab98b0f2ca68836c6bf690157ea7abfc3cd85 Mon Sep 17 00:00:00 2001 From: Dominik <dominik.brilhaus@hhu.de> Date: Sun, 21 Aug 2022 20:40:39 +0200 Subject: [PATCH] adapt readme --- README.md | 50 +++++++------------------------------------------- 1 file changed, 7 insertions(+), 43 deletions(-) diff --git a/README.md b/README.md index c5898f3..44e594d 100644 --- a/README.md +++ b/README.md @@ -1,47 +1,11 @@ # CEPLAS RNASeq Workshop 2022 -## Key dates - -- **Date**: August 22-24, 2022 -- **Tutors**: [Alisandra Denton](https://www.ceplas.eu/en/research/people/dr-alisandra-denton/) and [Dominik Brilhaus](https://www.ceplas.eu/en/research/data-science-and-data-management/) -- **Location**: Building 25.41. Room 00.41 ([at ZIM HHU, Düsseldorf](https://www.zim.hhu.de/ueber-uns/lageplan-und-anreiseskizze)) -- **Prerequisites** - - Technical - - Computers incl. required software and course material are provided during the course. - - Participants *can* bring own laptops, but without guarantee (possible system-specific dependencies) - - Expertise - - Some pre-knowledge in programming may help, but is not required. - - First (half) day will be an optional introduction. - - -## Topics (*preliminary*) - -- *[Optional, if needed]* Basic introduction to tools and programming (e.g. with Linux/Bash, R, Python) - -- Introduction to read processing and quality control - -- Introduction to read mapping and quantification - -- Long and short reads - - Transcriptome assembly - -- Post-mapping analysis - - Differential gene expression - - Clustering - - Functional annotation and enrichment - - Visualization - -## Registration - - - **Participants**: - - CEPLAS researchers of all levels - - Open to non-CEPLAS researchers, if max. participant number is not reached - - min. / max. participants: 10 / 20 -- **Registration phase**: June 27th - July 20th - -- **Topic wishlist**: If you would like to learn about specific topics or tools related to RNA-Seq data analysis, please raise them during the registration. - -- **Basic Intro**: Please let us know your programming expertise and wether you interested in a basic introduction to programming. - +This ARC provides the all course material required for the CEPLAS RNASeq Workshop 2022. Please explore the [Reader](_reader/RNAseqWorkshop.pdf) for details. +- Docker images at sciebo + - https://uni-duesseldorf.sciebo.de/s/53pA9W9TbOKTgGQ/ + - See reader section 4.3 for details + - Password provided via email or during class. + +- Notes collected during the workshop: https://pad.hhu.de/Qlsi4q9fQ9-YPmzv6Ryeog \ No newline at end of file -- GitLab