diff --git a/assays/Brilhaus2015_PE_mRNASeq/README.md b/assays/Brilhaus2015_PE_mRNASeq/README.md new file mode 100644 index 0000000000000000000000000000000000000000..171c13a2d9c5650aa176e7a5142ddf1bf4711941 --- /dev/null +++ b/assays/Brilhaus2015_PE_mRNASeq/README.md @@ -0,0 +1,15 @@ +../hhu_talinum_genome/assays/Brilhaus2015_PE_mRNASeq/dataset/ +├── [790M] DB_173_reC3_ED_GAGTGG_L001_R1_001.fastq.gz +├── [781M] DB_173_reC3_ED_GAGTGG_L001_R2_001.fastq.gz +├── [1016M] DB_201_reC3_EN_CGATGT_L001_R1_001.fastq.gz +├── [1009M] DB_201_reC3_EN_CGATGT_L001_R2_001.fastq.gz +├── [904M] DB_35_C3_MD_TTAGGC_L001_R1_001.fastq.gz +├── [893M] DB_35_C3_MD_TTAGGC_L001_R2_001.fastq.gz +├── [631M] DB_45_C3_MN_GATCAG_L001_R1_001.fastq.gz +├── [615M] DB_45_C3_MN_GATCAG_L001_R2_001.fastq.gz +├── [945M] DB_65_CAM_MD_GTGGCC_L001_R1_001.fastq.gz +├── [934M] DB_65_CAM_MD_GTGGCC_L001_R2_001.fastq.gz +├── [916M] DB_77_CAM_MN_GCCAAT_L001_R1_001.fastq.gz +└── [907M] DB_77_CAM_MN_GCCAAT_L001_R2_001.fastq.gz + + 10G used in 0 directories, 12 files diff --git a/assays/Brilhaus2015_PE_mRNASeq/dataset/README.md b/assays/Brilhaus2015_PE_mRNASeq/dataset/README.md deleted file mode 100644 index 8c5fb7e3255bb2791cac4ed9e56e8872df3bd531..0000000000000000000000000000000000000000 --- a/assays/Brilhaus2015_PE_mRNASeq/dataset/README.md +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:c39586d74339275b4e328aceeec2ed68165c49005bcba388dfb79bbfb2a3a87d -size 815 diff --git a/assays/Brilhaus2015_SE_mRNASeq/README.md b/assays/Brilhaus2015_SE_mRNASeq/README.md new file mode 100644 index 0000000000000000000000000000000000000000..8d58efadacc9c84a61c4735ff93a40ab3a3f88b8 --- /dev/null +++ b/assays/Brilhaus2015_SE_mRNASeq/README.md @@ -0,0 +1,27 @@ +../hhu_talinum_genome/assays/Brilhaus2015_SE_mRNASeq/dataset/ +├── [1.6G] DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz +├── [1.8G] DB_111_CAMED_ACAGTG_L002_R1_001.fastq.gz +├── [1.9G] DB_113_CAMED_GCCAAT_L002_R1_001.fastq.gz +├── [1.6G] DB_115_CAMED_CAGATC_L002_R1_001.fastq.gz +├── [1.8G] DB_121_CAMMN_AGTTCC_L001_R1_001.fastq.gz +├── [1.8G] DB_123_CAMMN_CCGTCC_L001_R1_001.fastq.gz +├── [1.8G] DB_125.fastq.gz +├── [1.9G] DB_137_CAMEN_AGTCAA_L002_R1_001.fastq.gz +├── [1.9G] DB_139_CAMEN_CCGTCC_L002_R1_001.fastq.gz +├── [1.5G] DB_143_CAMEN_AGTTCC_L002_R1_001.fastq.gz +├── [1.6G] DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz +├── [1.8G] DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz +├── [1.7G] DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz +├── [1.5G] DB_173_re-C3_ED_GAGTGG_L001_R1_001.fastq.gz +├── [1.6G] DB_175_re-C3_ED_ACTGAT_L001_R1_001.fastq.gz +├── [1.1G] DB_177_re-C3_ED_ATTCCT_L001_R1_001.fastq.gz +├── [1.6G] DB_185_reC3MN_GTGGCC_L001_R1_001.fastq.gz +├── [1.6G] DB_189_re-C3MN_GTGGCC_L002_R1_001.fastq.gz +├── [1.6G] DB_191_re-C3MN_GTCCGC_L002_R1_001.fastq.gz +├── [1.9G] DB_201_re-C3_EN_CGATGT_L002_R1_001.fastq.gz +├── [1.7G] DB_203_re-C3_EN_TGACCA_L002_R1_001.fastq.gz +├── [1.9G] DB_205_re-C3_EN_ACAGTG_L002_R1_001.fastq.gz +├── [1.4G] DB_97_CAMMD_CAGATC_L001_R1_001.fastq.gz +└── [1.8G] DB_99_CAMMD_CTTGTA_L001_R1_001.fastq.gz + + 40G used in 0 directories, 24 files diff --git a/assays/Brilhaus2015_SE_mRNASeq/dataset/README.md b/assays/Brilhaus2015_SE_mRNASeq/dataset/README.md deleted file mode 100644 index 31c5230449549280bc06932ab3b86916e20457fa..0000000000000000000000000000000000000000 --- a/assays/Brilhaus2015_SE_mRNASeq/dataset/README.md +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:88ea26b13e52366e1e7040ca5898635b7862f6fcc398a28a3034a8ba4508d0f1 -size 1517 diff --git a/assays/Maleckova2018_aba_mRNASeq/README.md b/assays/Maleckova2018_aba_mRNASeq/README.md index a1c5790fdd76c54db878dcb6136575c1d9132bf9..579592cf1f2dad42485d2ad6784b7f2c86d82b6a 100644 --- a/assays/Maleckova2018_aba_mRNASeq/README.md +++ b/assays/Maleckova2018_aba_mRNASeq/README.md @@ -2,4 +2,30 @@ ## Accession numbers -The read data as well as processed files are deposited at the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE116590 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116590). \ No newline at end of file +The read data as well as processed files are deposited at the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE116590 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116590).../hhu_talinum_genome/assays/Maleckova2018_aba_mRNASeq/dataset/ +├── [2.2G] 311_S73_L007_R1_001.fastq.gz +├── [2.0G] 312_S74_L007_R1_001.fastq.gz +├── [2.3G] 313_S75_L007_R1_001.fastq.gz +├── [2.1G] 314_S76_L007_R1_001.fastq.gz +├── [2.1G] 315_S77_L007_R1_001.fastq.gz +├── [2.3G] 316_S78_L007_R1_001.fastq.gz +├── [2.5G] 317_S79_L007_R1_001.fastq.gz +├── [2.0G] 318_S80_L007_R1_001.fastq.gz +├── [1.6G] 319_S81_L007_R1_001.fastq.gz +├── [2.3G] 320_S82_L007_R1_001.fastq.gz +├── [1.9G] 321_S83_L007_R1_001.fastq.gz +├── [1.7G] 322_S84_L007_R1_001.fastq.gz +├── [2.2G] 323_S85_L008_R1_001.fastq.gz +├── [2.5G] 324_S86_L008_R1_001.fastq.gz +├── [2.1G] 325_S87_L008_R1_001.fastq.gz +├── [2.0G] 326_S88_L008_R1_001.fastq.gz +├── [2.0G] 327_S89_L008_R1_001.fastq.gz +├── [2.1G] 328_S90_L008_R1_001.fastq.gz +├── [2.1G] 329_S91_L008_R1_001.fastq.gz +├── [2.2G] 330_S92_L008_R1_001.fastq.gz +├── [2.0G] 331_S93_L008_R1_001.fastq.gz +├── [2.3G] 332_S94_L008_R1_001.fastq.gz +├── [2.0G] 333_S95_L008_R1_001.fastq.gz +└── [1.9G] 334_S96_L008_R1_001.fastq.gz + + 50G used in 0 directories, 24 files diff --git a/assays/Maleckova2018_aba_mRNASeq/dataset/README.md b/assays/Maleckova2018_aba_mRNASeq/dataset/README.md deleted file mode 100644 index 8de99419f17a0fd13abd4e2d2561b89999154802..0000000000000000000000000000000000000000 --- a/assays/Maleckova2018_aba_mRNASeq/dataset/README.md +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:ff1544856115a966a89fdf86e95ffb8d3645950402be89b21750dbf9d3e8b839 -size 1231