diff --git a/assays/Brilhaus2015_PE_mRNASeq/README.md b/assays/Brilhaus2015_PE_mRNASeq/README.md index 171c13a2d9c5650aa176e7a5142ddf1bf4711941..d8090d33f93234ccdb37d0587f068ff6caed66d4 100644 --- a/assays/Brilhaus2015_PE_mRNASeq/README.md +++ b/assays/Brilhaus2015_PE_mRNASeq/README.md @@ -1,4 +1,9 @@ -../hhu_talinum_genome/assays/Brilhaus2015_PE_mRNASeq/dataset/ +# Brilhaus2015_PE_mRNASeq + +:bulb: Data files listed here are not yet available via git + +```bash +./dataset/ ├── [790M] DB_173_reC3_ED_GAGTGG_L001_R1_001.fastq.gz ├── [781M] DB_173_reC3_ED_GAGTGG_L001_R2_001.fastq.gz ├── [1016M] DB_201_reC3_EN_CGATGT_L001_R1_001.fastq.gz @@ -13,3 +18,4 @@ └── [907M] DB_77_CAM_MN_GCCAAT_L001_R2_001.fastq.gz 10G used in 0 directories, 12 files +``` \ No newline at end of file diff --git a/assays/Brilhaus2015_SE_mRNASeq/README.md b/assays/Brilhaus2015_SE_mRNASeq/README.md index 8d58efadacc9c84a61c4735ff93a40ab3a3f88b8..c4dad2323c49ec350487797e9ab2647ddddf8e33 100644 --- a/assays/Brilhaus2015_SE_mRNASeq/README.md +++ b/assays/Brilhaus2015_SE_mRNASeq/README.md @@ -1,4 +1,9 @@ -../hhu_talinum_genome/assays/Brilhaus2015_SE_mRNASeq/dataset/ +# Brilhaus2015_SE_mRNASeq + +:bulb: Data files listed here are not yet available via git + +```bash +./dataset/ ├── [1.6G] DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz ├── [1.8G] DB_111_CAMED_ACAGTG_L002_R1_001.fastq.gz ├── [1.9G] DB_113_CAMED_GCCAAT_L002_R1_001.fastq.gz @@ -25,3 +30,4 @@ └── [1.8G] DB_99_CAMMD_CTTGTA_L001_R1_001.fastq.gz 40G used in 0 directories, 24 files +``` \ No newline at end of file diff --git a/assays/Maleckova2018_aba_mRNASeq/README.md b/assays/Maleckova2018_aba_mRNASeq/README.md index 579592cf1f2dad42485d2ad6784b7f2c86d82b6a..79f001291c0b69305d89c4d8c8588f6c72bfd652 100644 --- a/assays/Maleckova2018_aba_mRNASeq/README.md +++ b/assays/Maleckova2018_aba_mRNASeq/README.md @@ -1,8 +1,9 @@ # Maleckova2018_aba_mRNASeq -## Accession numbers +:bulb: Data files listed here are not yet available via git -The read data as well as processed files are deposited at the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE116590 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116590).../hhu_talinum_genome/assays/Maleckova2018_aba_mRNASeq/dataset/ +```bash +./dataset/ ├── [2.2G] 311_S73_L007_R1_001.fastq.gz ├── [2.0G] 312_S74_L007_R1_001.fastq.gz ├── [2.3G] 313_S75_L007_R1_001.fastq.gz @@ -29,3 +30,4 @@ The read data as well as processed files are deposited at the Nation └── [1.9G] 334_S96_L008_R1_001.fastq.gz 50G used in 0 directories, 24 files +``` \ No newline at end of file diff --git a/assays/Maleckova2019_A_Oxford_Nanopore/README.md b/assays/Maleckova2019_A_Oxford_Nanopore/README.md index 6e4c399f9a74fbb828dc11d7cdaeb6286ed1d229..ae93666c0a5359bf14f4e234b98acf7f6f80599c 100644 --- a/assays/Maleckova2019_A_Oxford_Nanopore/README.md +++ b/assays/Maleckova2019_A_Oxford_Nanopore/README.md @@ -1,9 +1,9 @@ # Maleckova2019_A_Oxford_Nanopore -:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) +:bulb: Data files listed here are not yet available via git ```bash -assays/Maleckova2019_A_Oxford_Nanopore/dataset/ +./dataset/ ├── [112G] 261-NGS-041019-0 │  ├── [ 31G] Talinum1.zip │  ├── [ 25G] Talinum2.zip diff --git a/assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/README.md b/assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/README.md index e3d129d71e9296c0fc969ee9803c3cc9610e5908..ae480cccd1f12223ebabfe64dab0c1b7a60df633 100644 --- a/assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/README.md +++ b/assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/README.md @@ -1,9 +1,9 @@ # Maleckova2019_B_Illumina_HiSeq_DNASeq -:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) +:bulb: Data files listed here are not yet available via git ```bash -assays/Maleckova2019_B_Illumina_HiSeq_DNASeq/dataset/ +./dataset/ ├── [692K] 14-7_S1_L008_R1_001_fastqc.html ├── [423K] 14-7_S1_L008_R1_001_fastqc.zip ├── [ 25G] 14-7_S1_L008_R1_001.fastq.gz diff --git a/assays/Maleckova2019_C_PacBio_Isoseq/README.md b/assays/Maleckova2019_C_PacBio_Isoseq/README.md index 17543c0d893982ee14a7cd321c1117b347f09d73..493a2d7056d89f624e53f16001ca696ffa4eb0c8 100644 --- a/assays/Maleckova2019_C_PacBio_Isoseq/README.md +++ b/assays/Maleckova2019_C_PacBio_Isoseq/README.md @@ -1,10 +1,10 @@ # Maleckova2019_C_PacBio_Isoseq -:bulb: Data files listed here are not yet available via git due to LFS issues (March 14 2023) +:bulb: Data files listed here are not yet available via git ```bash -assays/Maleckova2019_C_PacBio_Isoseq/dataset/ +./dataset/ └── [698G] 160-NGS-050619_IsoSeq-TT ├── [196G] Cell1 │  └── [196G] 1_D06