diff --git a/.arc/validation_packages.yml b/.arc/validation_packages.yml new file mode 100644 index 0000000000000000000000000000000000000000..c86bf26de4b7ecd071a3df0ab7c4dfaa0ebd87d2 --- /dev/null +++ b/.arc/validation_packages.yml @@ -0,0 +1,4 @@ +arc_specification: 2.0.0-draft +validation_packages: + - name: invenio + version: 2.1.0 diff --git a/assays/microscopy/README.md b/assays/microscopy/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/microscopy/dataset/.gitkeep b/assays/microscopy/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/microscopy/dataset/Fileset_33920/2025_01_14.nd2 - 2025_01_14.nd2 (series 60)-1_crop.tif b/assays/microscopy/dataset/Fileset_33920/2025_01_14.nd2 - 2025_01_14.nd2 (series 60)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..700d71bfa76e3bdb299e05be41589bc852bc4cd5 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33920/2025_01_14.nd2 - 2025_01_14.nd2 (series 60)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33925/2025_01_14.nd2 - 2025_01_14.nd2 (series 62)-1_crop.tif b/assays/microscopy/dataset/Fileset_33925/2025_01_14.nd2 - 2025_01_14.nd2 (series 62)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..6168cad67799be9cee753238ef9058e8ee8d4991 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33925/2025_01_14.nd2 - 2025_01_14.nd2 (series 62)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33932/2025_01_14.nd2 - 2025_01_14.nd2 (series 63)-1_crop.tif b/assays/microscopy/dataset/Fileset_33932/2025_01_14.nd2 - 2025_01_14.nd2 (series 63)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..f889ecc01c765fc7668357c3f35611b864ee2948 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33932/2025_01_14.nd2 - 2025_01_14.nd2 (series 63)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33939/2025_01_14.nd2 - 2025_01_14.nd2 (series 64)-1_crop.tif b/assays/microscopy/dataset/Fileset_33939/2025_01_14.nd2 - 2025_01_14.nd2 (series 64)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..9c83b872274a13187b5b21de7b8dd793eeac9fd3 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33939/2025_01_14.nd2 - 2025_01_14.nd2 (series 64)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33946/2025_01_14.nd2 - 2025_01_14.nd2 (series 65)-1_crop.tif b/assays/microscopy/dataset/Fileset_33946/2025_01_14.nd2 - 2025_01_14.nd2 (series 65)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..1dc8c9737dd01bd8675ef0a5004003c8f8c1c5d0 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33946/2025_01_14.nd2 - 2025_01_14.nd2 (series 65)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33953/2025_01_14.nd2 - 2025_01_14.nd2 (series 66)-1_crop.tif b/assays/microscopy/dataset/Fileset_33953/2025_01_14.nd2 - 2025_01_14.nd2 (series 66)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..fcb6469097b5db1ecad43ccd46c1206a75422da6 Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33953/2025_01_14.nd2 - 2025_01_14.nd2 (series 66)-1_crop.tif differ diff --git a/assays/microscopy/dataset/Fileset_33959/2025_01_14.nd2 - 2025_01_14.nd2 (series 67)-1_crop.tif b/assays/microscopy/dataset/Fileset_33959/2025_01_14.nd2 - 2025_01_14.nd2 (series 67)-1_crop.tif new file mode 100644 index 0000000000000000000000000000000000000000..ead555203d0d9ce55677ff5a1d088291d033c5ae Binary files /dev/null and b/assays/microscopy/dataset/Fileset_33959/2025_01_14.nd2 - 2025_01_14.nd2 (series 67)-1_crop.tif differ diff --git a/assays/microscopy/isa.assay.xlsx b/assays/microscopy/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..b2901096d0f7ca8d2bb95fc54517b16ed206dd37 Binary files /dev/null and b/assays/microscopy/isa.assay.xlsx differ diff --git a/assays/microscopy/protocols/.gitkeep b/assays/microscopy/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index 4a5424bfbe27981ce19c6bbb67002a9727f1165a..04352b9c6428b20bbbfcf7424b41bdd187a64a4d 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/studies/Coryne_glutamicum/README.md b/studies/Coryne_glutamicum/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/Coryne_glutamicum/isa.study.xlsx b/studies/Coryne_glutamicum/isa.study.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..6456801a0807e6651c01db730c44b008a4dcd9c3 Binary files /dev/null and b/studies/Coryne_glutamicum/isa.study.xlsx differ diff --git a/studies/Coryne_glutamicum/protocols/.gitkeep b/studies/Coryne_glutamicum/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/Coryne_glutamicum/resources/.gitkeep b/studies/Coryne_glutamicum/resources/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391