KeyValue
CreIdentifierCre02.g100100
GeneName
MapManRNA.regulation of transcription.AP2/EREBP, APETALA2/ethylene-responsive element binding protein family;hormone metabolism.ethylene.signal transduction
AnnotationTFs.AP4
FDR(acetate-depleting 25vs35)0.5442
FDR(acetate-depleting 25vs40)0.4902
FDR(constant-acetate 25vs35)0.0000**
FDR(constant-acetate 25vs40)0.0000**
FDR(medium)0.2687
FDR(temperature)0.1356
FDR(constant-acetate 25 vs acetate-depleting 25)0.4613

First figure, mean normalized transcript read counts are visualized with error bars representing standard deviation of triplicates.

Second figure, heatmap, the color bar represents the mean normalized read count values. The dashed grey box indicates time points that were imputed from additional samples harvested from the same experiment of the constant-acetate 25°C (0 h, 0.5 h, 26 h, and 48 h, respectively). The cell physiologies were steady under the constant-acetate 25°C. See RNA-seq methods for details.

Third figure, the transcriptional change of the transcript under each condition is presented as log2 (fold change, FC) regarding the pre-heat time point. Log2FC were determined on the mean normalized transcript abundance.

Black vertical lines in the first and third figures indicate the start of heat treatments under 35°C or 40°C or the equivalent time point at 25°C. The first data point before the black line is from the pre-heat time point.