ChlamyCyc pathway ontology enrichment

Ontology enrichment was performed using KEGG pathway ontology from https://ftp.plantcyc.org/pmn/Pathways/Data_dumps/PMN15.5_January2023/pathways/. The p values were calculated using a hypergeometric test (BioFSharp.Stats) and corrected for multiple testing using the Benjamini-Hochberg method (FSharp.Stats).

All functional sets with a p value less than 0.05 and more than 5 annotated transcripts are shown. The ratio at the end of each bar indicates the number of significant transcripts between the two compared conditions vs detected transcripts in our RNA-seq data contained in the respective function bin. Multiple testing correction was performed by Benjamini & Hochberg FDR.The bars are sorted based on the FDR p values, from top to bottom, from the small to big FDR values.

FDR significant bin numbers are written bold:
* FDR < 0.1
** FDR < 0.05