KeyValue
CreIdentifierCre10.g436350
GeneNameSHKF1
MapManamino acid metabolism.synthesis.aromatic aa.chorismate.shikimate kinase
Annotation
FDR(acetate-depleting 25vs35)0.3958
FDR(acetate-depleting 25vs40)0.7538
FDR(constant-acetate 25vs35)0.1786
FDR(constant-acetate 25vs40)0.0106*
FDR(medium)0.8547
FDR(temperature)0.4537
FDR(interaction)0.9307
FDR(constant-acetate 25 vs acetate-depleting 25)0.8651

First figure, normalized counts are visualized with error bars representing standard deviation of triplicates.
Second figure, heatmap, the color bar represents the mean normalized read count values. The dashed grey box indicates timepoints that were imputed from additional samples harvested from the same experiment with constant acetate supply and constant 25 °C (0 h, 0.5 h, 26 h, and 48 h respectively). The cell physiologies were constant under constant-acetate 25 °C.
Third figure, every normed count is given as log2 (fold change, FC) regarding the preheat time point. Log2FC were determined on mean transcript abundances.