diff --git a/runs/05_Enrichments/01_noPump_35vs25.xlsx b/runs/05_Enrichments/01_noPump_35vs25.xlsx deleted file mode 100644 index 87a8abc4851ca11ba7d339b4b3b8832b3448b0e4..0000000000000000000000000000000000000000 Binary files a/runs/05_Enrichments/01_noPump_35vs25.xlsx and /dev/null differ diff --git a/runs/05_Enrichments/02_noPump_40vs25.xlsx b/runs/05_Enrichments/02_noPump_40vs25.xlsx deleted file mode 100644 index 7e2a1991e4c1334fa69f1fc9865e12b31fd462cf..0000000000000000000000000000000000000000 Binary files a/runs/05_Enrichments/02_noPump_40vs25.xlsx and /dev/null differ diff --git a/runs/05_Enrichments/03_temperature.xlsx b/runs/05_Enrichments/03_temperature.xlsx deleted file mode 100644 index 1a7e30910c6099321916f32a9bdd986315bfccc7..0000000000000000000000000000000000000000 Binary files a/runs/05_Enrichments/03_temperature.xlsx and /dev/null differ diff --git a/runs/05_Enrichments/04_medium.xlsx b/runs/05_Enrichments/04_medium.xlsx deleted file mode 100644 index 5f80af3c0c7b76cd71a1d172f7bae9433edf3d32..0000000000000000000000000000000000000000 Binary files a/runs/05_Enrichments/04_medium.xlsx and /dev/null differ diff --git a/runs/05_Enrichments/05_interaction.xlsx b/runs/05_Enrichments/05_interaction.xlsx deleted file mode 100644 index c6ba289c2692fa40108c4bf1103e36a9d182224b..0000000000000000000000000000000000000000 Binary files a/runs/05_Enrichments/05_interaction.xlsx and /dev/null differ diff --git a/runs/05_Enrichments/README.md b/runs/05_Enrichments/README.md deleted file mode 100644 index 999bcbb9c0856e0a6ace904d21be9aaf0774ee55..0000000000000000000000000000000000000000 --- a/runs/05_Enrichments/README.md +++ /dev/null @@ -1,13 +0,0 @@ -Enrichment tests based on hypergeometric tests were performed for any functional group (MapMan). -Hierarchical terms are expanded (PS.lightreaction.PSII -> PS, PS.lightreaction, PS.lightreaction.PSII) - -|Colum|Header|Description| -|--|--|--| -|A|Term|MapMan functional term| -|B|TotalUniverse|Total number of annotations| -|C|TotalNumberOfDE|Total number of annotations of significant Transcripts| -|D|NumberInBin|Number of measured transcripts that are labeled with the corresponding term | -|E|NumberOfDEsInBin|Number of measuered transcripts that are significant and are labeled with the corresponding term| -|F|PValue|p value of the hypergeometric test| -|G|FDR|false discovery rate (Benjamini Hochberg corrected p values)| -|H|Items|Trivial names of significant transcripts| \ No newline at end of file diff --git a/runs/Ru_Results.pptx b/runs/Ru_Results.pptx index 98ae2cd55c67d11523bd197fdbb73e4e1304e22c..b2329a1dc83117f57d91380356b5c923a48e0ec9 100644 Binary files a/runs/Ru_Results.pptx and b/runs/Ru_Results.pptx differ