diff --git a/runs/01_CountData/README.md b/runs/01_CountData/README.md
index 3e37c08e00f6e844d58b4638bdf8be390029feff..490376b79c42c6a543b3fa27a004fa165b996d1a 100644
--- a/runs/01_CountData/README.md
+++ b/runs/01_CountData/README.md
@@ -1 +1,20 @@
-Counts measured in Zhang 2022 located in `runs\01_CountData\Zhang2022` were merged with counts measured in Zhang 2023 located at `assays\Transcriptomics\dataset`.
\ No newline at end of file
+Counts measured in Zhang 2022 located in `runs\01_CountData\Zhang2022` were merged with counts measured in Zhang 2023 located at `assays\Transcriptomics\dataset`.
+
+
+countsJoinedFrames.tsv contains cuonts from:
+
+  - nopump25
+  - nopump35
+  - nopump40
+  - TAP35
+  - TAP40
+
+
+countsJoinedFrames_incTAP25.tsv contains cuonts from:
+
+  - nopump25
+  - nopump35
+  - nopump40
+  - TAP25 (samnples 4h and 8h missing)
+  - TAP35
+  - TAP40
diff --git a/runs/02_Normalization/countsJoinedFrames_incTAP_normed.tsv b/runs/02_Normalization/countsJoinedFrames_incTAP25_normed.tsv
similarity index 100%
rename from runs/02_Normalization/countsJoinedFrames_incTAP_normed.tsv
rename to runs/02_Normalization/countsJoinedFrames_incTAP25_normed.tsv
diff --git a/runs/03_PCA/README.md b/runs/03_PCA/README.md
index b395d1ce12148ef2af3193776fef88799b119c5d..7c148a9c67ed83198735c99f3a761edc02a9568b 100644
--- a/runs/03_PCA/README.md
+++ b/runs/03_PCA/README.md
@@ -1,8 +1,11 @@
 ## Sample annotation
 
+PCA and heatmaps withing inc_TAP25 contain plots that include samples from TAP 25°C for time points preheat, 2h, and 24h.
+
 Note:
 
-  - TAP samples were taken at more time points than nopump samples. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples.
+  - TAP35 and TAP40 samples were taken at more time points than nopump samples. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples.
+  - TAP25 samples were taken at less time points than nopump samples. 1, 5, and 9 correspond to timepoints preheat, 2h, and 24h.
 
 |sample names|medium|temperature|description|
 |--|--|--|--|
@@ -22,6 +25,9 @@ Note:
 |40°C_8h - 40°C_2h3 |nopump|40|triplicates of 8h sample|
 |40°C_24h - 40°C_2h3|nopump|40|triplicates of 24h sample|
 | - | - | - | - |
+|A_1_25C - C_1_25C|TAP|25|triplicates of preheatsample|
+|A_5_25C - C_5_25C|TAP|25|triplicates of 2h sample|
+|A_9_25C - C_9_25C|TAP|25|triplicates of 24h sample|
 |A_1_35C - C_1_35C|TAP|35|triplicates of preheatsample|
 |A_5_35C - C_5_35C|TAP|35|triplicates of 2h sample|
 |A_6_35C - C_6_35C|TAP|35|triplicates of 4h sample|
diff --git a/runs/04_StatisticalAnalysis/plots_old.zip b/runs/04_StatisticalAnalysis/plots_old.zip
new file mode 100644
index 0000000000000000000000000000000000000000..c3a5eb6bc7dc1a8d7c5a0b14b92ea40cf5ee2305
Binary files /dev/null and b/runs/04_StatisticalAnalysis/plots_old.zip differ