diff --git a/runs/03_PCA/README.md b/runs/03_PCA/README.md index 39bfb58555708abf9a62bd62dd5558857f757f86..3c1f7c3d5bcea72f7fed84838bc0306fc86e87e3 100644 --- a/runs/03_PCA/README.md +++ b/runs/03_PCA/README.md @@ -1,5 +1,9 @@ ## Sample annotation +Note: + + - TAP samples were taken at more time points. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples + |sample names|medium|temperature|description| |--|--|--|--| |25°C - 25°C3 |nopump|25|triplicates of preheatsample| @@ -29,7 +33,3 @@ |A_7_40C - C_7_40C|TAP|40|triplicates of 8h sample| |A_9_40C - C_9_40C|TAP|40|triplicates of 24h sample| -Note: - - - TAP samples were taken at more time points. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples - diff --git a/runs/05_Enrichments/01_noPump_35vs25.xlsx b/runs/05_Enrichments/01_noPump_35vs25.xlsx index 788569f30694f9a6a75d508f9b80a5a8cb2d9053..87a8abc4851ca11ba7d339b4b3b8832b3448b0e4 100644 Binary files a/runs/05_Enrichments/01_noPump_35vs25.xlsx and b/runs/05_Enrichments/01_noPump_35vs25.xlsx differ diff --git a/runs/05_Enrichments/02_noPump_40vs25.xlsx b/runs/05_Enrichments/02_noPump_40vs25.xlsx index 0901e8b0d7f47cb4992fd301588e6a1fe27b109b..7e2a1991e4c1334fa69f1fc9865e12b31fd462cf 100644 Binary files a/runs/05_Enrichments/02_noPump_40vs25.xlsx and b/runs/05_Enrichments/02_noPump_40vs25.xlsx differ diff --git a/runs/05_Enrichments/03_temperature.xlsx b/runs/05_Enrichments/03_temperature.xlsx index 5c4576ece36f79e107497cfab76ab6f5dbbb4201..1a7e30910c6099321916f32a9bdd986315bfccc7 100644 Binary files a/runs/05_Enrichments/03_temperature.xlsx and b/runs/05_Enrichments/03_temperature.xlsx differ diff --git a/runs/05_Enrichments/04_medium.xlsx b/runs/05_Enrichments/04_medium.xlsx index 71f52781836cf200561e4b7cceb74f1483d0175e..5f80af3c0c7b76cd71a1d172f7bae9433edf3d32 100644 Binary files a/runs/05_Enrichments/04_medium.xlsx and b/runs/05_Enrichments/04_medium.xlsx differ diff --git a/runs/05_Enrichments/05_interaction.xlsx b/runs/05_Enrichments/05_interaction.xlsx index 493213d2574adc95ada02f7bac7688726687c594..c6ba289c2692fa40108c4bf1103e36a9d182224b 100644 Binary files a/runs/05_Enrichments/05_interaction.xlsx and b/runs/05_Enrichments/05_interaction.xlsx differ diff --git a/runs/06_FunctionalSetFigures/README.md b/runs/06_FunctionalSetFigures/README.md index 89ba86b6b60e90df58c57728fae8cde483c221bc..0268d35f9c399eb439750485dfdd1145640b2280 100644 --- a/runs/06_FunctionalSetFigures/README.md +++ b/runs/06_FunctionalSetFigures/README.md @@ -1,7 +1,13 @@ CreIdentifier were grouped by (expanded) MapMan functional annotation. To test whether a signal over time differed at all a ANOVA was performed. Significant signals are colored in red-shades, unsignificant signals in blue/grey. +Values: + _LFC_: log2 fold changes were determined in respect to the preheat samples + _zScores: zScores of the signals were determined +Spacing: + _equally_: every time point is equally spaced -_timed_: x axis spacing is according to time points \ No newline at end of file + +_timed_: x axis spacing is according to time points diff --git a/runs/Ru_Results.pptx b/runs/Ru_Results.pptx index 543831d99ba36851b57de246d4a50e0698bcc563..6c6b54ab1fad653cadcb965c458138dc10fa9c98 100644 Binary files a/runs/Ru_Results.pptx and b/runs/Ru_Results.pptx differ