diff --git a/runs/BEAST/alignment_files/g31563_select.fasta b/runs/BEAST/alignment_files/g31563_select.fasta new file mode 100644 index 0000000000000000000000000000000000000000..758975d2dc3afa848a534f6e7c6cdc76e87fa62c --- /dev/null +++ b/runs/BEAST/alignment_files/g31563_select.fasta @@ -0,0 +1,440 @@ +>4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii +---MGS---S------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------HH--------------------------------------------------------------- +---HHHHS----------------------S---G-----------LVPRG-----------S-----------------HMVELE-------------- +-A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA----- +YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA---------------- +--------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL-- +YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPY +GEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLV +IYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQG +APARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS- +----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPL +ADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------I +YANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW-- +-EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR---- +-------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG-------------------------------------- +--------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARR +QMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI----------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------K---------------------------------------------------- +---------------------------------- +>AAP85534.1_isoamylase_Chlamydomonas_reinhardtii +MLLQAP---G------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------LAPG------------------------------------------------------------S +ARRQAACSVAR----------EATNVRIVTAPALTPGRAGVSGRRILPPSR-----------V-----------------VSVELE-------------- +-A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA----- +YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA---------------- +--------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL-- +YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPY +GEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLV +IYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQG +APARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS- +----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPL +ADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------I +YANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW-- +-EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR---- +-------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG-------------------------------------- +--------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARR +QMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI----------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------K---------------------------------------------------- +---------------------------------- +>AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii +---MLG---GLPSPSRPRVVSGGLAVSSGAANSD-----------------CRPVERGPSPSTEGKETRGQREDTDDEEAVALAC---HKGSLFSQEERG +LSLPLSPVEEESGGDSGS-----EFKREEVSPSLHREPGERVAPGKEEREEEHGDPSAEV---------------------------------------- +PSSAEHKMPSTVFQSKGGLPGFFAALLGGKEADGAAGPP----------------------------------------------------------PRP +PEAPVSPF--R----------PQGDGETESHESAVSAGPSASSSSSSLSSSS-----------FSSSSCTALKTRG----------------------S- +-------------------------------SEEE---GWE--TRVEARGVRTRNEAQEGGPQ-SVSHGLERSEENALEA----RETQELEETESR---- +QLLRDHGGKMGA-C---VLRD-SD---------------------------EDLCLFRLW-GPHVDRCWVQLN----P-----------TK--------- +--------------AG-ES-----------------------PRRFELK---------------NEGNALWGTVLRG-VP-------------S--R-HF +RCP-L------------SI--P--SLG--YS-G---DPYAR------------------------------HT-DF---F--------------SNTCYV +-TDASRFPWKHLQ---------------SFDP-----------------------------------------------------------P--TWNKLI +IYELHPGTFSPAS-----------ADRTVFETLVD-KLDHIRSLNFNAVEFLPVQEFGG----------------EW--GYNPRLLLATHGKY----GTP +-------DQLRKLVDECHRKGLAVIFDLVLNHGSAKL--NS-LW--NW-DGYGKDAS-----GGIYFEG----------GGE-------SG--------- +----W-G---RKFSFHKREVRDMILAAALCFIEEYGADGLRLDSVHSMPWDL------------------------------------------------ +--------LQELT------HAVRSKHPSKIL-IAEV--------------T---PENPQICN-----SAGFDSCWIHSAYYDA-I-KVTRGQDGNHH--- +----------------------------LDMLRAMIDVH---RGFRMSH--QGVNSLLGSHDQAGNKQGGHTDGR-----------AG---RYFVDLF-G +GRNNWHSRAQCRMW-YSLQAVCRGLPMMFMGTETHQDKWWNVDEQH--------------K-----MNWNFVENHDPL--AEQMMNLVAAANKLRLSFPS +LTDDHAPVRFCHL----------------------DYQNRV-------------LGFVRGS-------------------------------------LL +VVLNCS-ESQWEGRDYEVQ--------------------TDC--VNR-KFKQVFNSQAA----EFGGWEASWSSADRN------------LSSSVH---- +------ARLPVNLPKWSVTVYE-RQE-------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>ACY56095.1_isoamylase_Oryza_sativa_Indica_Group +---MAS---L------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------PHCL----------------------------------------------------------SAR +PLVVAAAPG------------RPGPGPGPWLRGGARRRNAAFSAGNAGRRV-----------G------------------LRRSV-------------- +-A-----------------------------------SAVE--VGVGEDEE-GVEEEEEEVEA---------------------VVMPERYALGG----- +ACRVLAG----MPAPLGATALDG------------------------------GVNFAVY-SAGASAASLCLF----TPDDLEA---------------- +--------------------------------------------------DEVTEEVPLDPLFNRTGNVWH-VFIEG-EL-------------HN-ML-- +YGY-RFDGMFAP-----HC----GQYF--DVSNVVVDPYAKA------------------------------V-ISRGEYG------V-----PGPG--- +---------GDCW-------------------------------PQMAGM-IP----------LP-YST-----FDW---QGD--LPL--RY--PQKDLV +IYEMHLRGFTKHSSSNV-------EHPGTYIGAIS-KLDYLKELGVNCVELMPCHEFNELEYFSCS-----SKMNFW--GYSTINFFSPMIRYSSG-GIR +NCGRDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGN--EKGP-ILSF-R---GIDN-----STYYMLAPK----------G-EFY--N--------YS- +----GCG---NTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWD-----------------PVNVYGS--PVEGDM-----TTTGTPL +ATPPLID-MISNDPILGDVKLIAEAW-DAGG-LYQVGQFPHWK-IWSEWNG---KYRDIVRQFIKGTD-----GF-AGGFAECLCGSPH----------L +YQA------------------GGRKPWH----SINFVCAHDG-----FTLADLVTYNKKYNSSNGEDN----RDGENHNLSWNCGE---EG--EFAGL-- +-SVKRLRKRQMRNF-FVSLMVSQGVPMFYMGDEYGHTKGGNNNTYCHDH-----------YVN--YFRWDKK-E--E---SSDLQRFCSLMTKFRK---- +-------------------QCESLGLADFPTAQRLHWHGHQPGKPDWS-ETSRFVAFSTKDE-------------------------------------- +--------------------TKGEIYVAFNASHLPAVVGLPER-P-GYRWEPLVDTGKPAPYD---FLT--------DD----------LPDRAH--AVH +LFSHFLNSNLYPMLSYSSIILELQPD-------------------------------------------------------------------------- +-------------------------------------------D-------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------------------------------------------TGYFAPTLRY----GSP +-------DDLKYFIDRCHAANIGVILDWVPGTFPKDD--WALAR--FF-DG----TA-----LY-EHADPRL-------GEH-------MD--------- +----WGT---YIFYYGRNEVRSFLLSNAYYWLREFHIDGLRVDAVASMLYLDY-SR-------------------KDGE-WL-----P-----NAYGGRE +NLDVIEF-LKQLN------VMVGERFPGVLT-IAEE--------------S---TAWPAVSRPVYAGGL------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>CBr_g31563_1_4-alpha-glucan-branching_protein +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------MYSQLC--------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------TPGLG----------------------------- +AILDGQGG----------------------------------------------CVFRVW-APNAEAAFIALH----D------------E--------- +--------------AS-SV-----------------DGQEGTVKMIAME---------------KQGAFW-AQRVRN-VR-------------AG-D-KY +HYVFR------------HQ--G--VDY--HR-R---DARAR------------------------------HT-DF---N--------------SDACII +-TDPT----YEWY---------------PFQT--------------------------------------------------------------PAFEEM +IIYQLHVGAFTGR-----------DGAGSFMEAEG-KLDHIKGMGFNTIQLMPVHEFSG----------------EW--GYNPRLLCAIHQKY----GTP +-------EQLRHFVNECHIRGIAVIFEVVLNHMATNL--NS-LW--AY-DGLNTEDD-----GGLYFDR----------AFD-------TG--------- +----S-S---RGFAYEEREVREMISDAVRMFLSEYKADGLRIHAVHNTPREV------------------------------------------------ +--------LEDMT------STMHEEFPGKIL-ISDV--------------T---PENPKIVS-----RTGFDSTVIHSTYFDM-R-KHMRGD---LD--- +----------------------------GRKLEKAIGLH---YGFTKPT--QCIKHFLGAHDHIGDRNDGMFDAA-----------IDGFHRYAVDLF-G +GRAKWEANAAARAW-YMVMTMSAGIPLLFMGTEFSQDGWWGVQPDE--------------C-----VNWEKAE--DDT--GKTMMKLVKAANEFRRESPA +VLH--GTVDVVHY----------------------DENHGI-------------IGFWRKSE---------------------------------KEWLF +VVANLS-SYQWSEEEYEVR--------------------VGNCGTGH-KFIEVFNSQDA----QYGGWEGSGNAGKKL------------KG--NG---- +------RRISINLPQWSVLIFE-PTD-------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii +---MAW---SV--------------------TQA------------------------------------------------------------------ +-------------------------------------------PAGRASCICPRGIGGSG---------------------------------------- +GIGAAASSSQALRSS-ARRRKRVALCCGSPLLGRALSLS----------------------------------------------------------CHV +HGKHYSRP--S----------TRVSCADPVSPAESTAASTATASKDLLEP-S-----------KADHSMEEQTMEIA-KQIQAFRDGSLKLKEQD----- +------------------------------AALPKVVPPPG--DGQRIYEIDPYLKNYRDHLE---------------------YRYSQYKAKVD----- +AINKHEG----GLEAFSRGYE-KFGF---------------------NRTAA-GITYREW-APAAKSASLMGD---------------FNN--------- +--------------WN-P------------------------NADMMKK---------------NEYGVWE-LFLPNNADGS-----------AA-IP-- +HGS-RVKIH--M-----ET--A--SGV-KDA-I---PAWIK------------------------------FAVQA------------------------ +-------------PGE-------I-PYN------------------GI-Y-Y----------DPPPEER-----YEF---K----HPR--PK--RPNSLR +VYEAHVGMSSTEP------------KVNSYSAFRDDVLPRIKGLGYNAVQLMAVMEHAYYG--------------SF--GYHITNFFAVSSRC----GTP +-------DELKSLIDKAHELGLFVLMDVVHSHCSNNV--LDGLN--MF-DG----TD-----SQYFHSGAR--------GYH-------WM--------- +----WDS---RLFDYSSWEVLRFLLSNLRWWMEEYKFDGFRFDGITSMMYTHHGLQ------------------MTFTG-QY-----S-----EYFGMTT +DVDAVVY-LMLAN------DLLHALYPQTIT-VAED--------------V---SGMPTLCIPVADGGIGFD-YRLQMAIADKWI-DILE---------K +LK---------------------DEEWN----MGNIVFT---L-TNRRWMEKCISYAESHDQALVGDKT--LAFW-----LMDKDM---YDHMALDRPST +PRIDRGIALHKMIR-LITMALGGEGYLNFMGNEFGHPEWIDFPRSDQKLPNGKFVPGNKNSFDKCRRRFDLGDA--DYLRYRGLQEFDRAMQQLEAKYEF +MVA--PHEYVSRK----------------------NEGDKI-------------IVFEKGD-------------------------------------LV +FVFNFH--WQKSYTDYRV----------------------GCLK-PG-NYKVVLDTDER----LFGGFGRLDHSAVFHTN--------EGWYDDRP---- +------QSFQVYSPCRTAVVYA-PGLSQRVAMADSSWDDAALITAFNSAVGKYQERHSSKESDGKSSHQE-KIESASQQDQAAAEGSSQHADSSFVDPSS +YYPYPYPQPHPSYPYPAFVYPVPAYACAPPPSHCCHHSCCHSSSTQSSRSDDPSFETLKLAILQSLSQLPPDKQLSLEDNAEVLIAWFNAGFRTARSPSR +VVPISLFLIYWAERWLDQGFLPRTSESKKEAFRKYLEASGVLDSLTKVLVALYEENDKPPLAIDFIQHNLGGYTNEEYTKLKGERDELQLKYNELVAAHE +ELGRKFEE-LQLQLPPP-E---EAPPVEGAPP-A +>GAQ78433.1_alpha-amylase_Klebsormidium_nitens +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +----------------------------------------------------------------------------------------------MGGVES +SPGGAEDG----QSGHKEVER-GE--------------------------------G-----------LTKHP----P----SPD---K---PKVQLTHE +-----------------------------------------------------------------KPSVED-SVAAK-IV-------------EQG---- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-EEILIQGFNWES----------HH-RNWYQTLLE-KVPELKAAGFTGIWLPPASDSLA----------------PQ--GYLPKDLYCLNSAY----GSS +-------DQLRHLLRTLKAAGIRPIADIVINHRIGSAQGNGGQW-NRY-E---------GMRMAWDETAVTSD--SYGGLGNPGTG--E--------TF- +----EGA---PNIDHSQEHVQQDITEWLRWLKDDVGFSGFRFDYAKGYSPDF-V-K-------------------KYIE-AVR-PDFA----VGEYW--- +--D--ACSY--------------GPEPESVL-EANQ--------------E---EHRQRIVDWIDGTG-----G-LASAFDFTTKGVLQ----------E +AVS-------------------KSEYWR----LKDDQGRPPGV-I-GLWPARAVSFVENHDTGSTQN---------------------------HWPF-- +-----P-KDEVLQG-YAYILTHPGVPTVFYDHYFEWGGE--------------------------------------------MKAALSRLIQIRRQQHI +TSQ--STVHILE-------------------------AA-S------------VYVAEVDD-------------------------------------CT +L-MKLG-KEDWAPPD-------------------------NQ------KWC-WVHSGR--NYS---IWT------------------------------- +-----------------------REKKPP----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>GAQ80182.1_isoamylase_Klebsormidium_nitens +---MQ----------------------------------------------------------------------------------------------- +-------------------------------------RQCTGRDTASARSKSSPAVHALKKDGNT----------------------------------- +-------FVYHINGGGRVLASVRKE-ARRFMVTLEVNTK----------------------------------------------------------ELE +IDSATPLHL------------HWGLSRSDSEDWVLLDAKSAPPNTT-LSGG-----------ETEAMRTPILESRPGVRRIEIALD-------------- +-A-----------------------------------RKAP--VELHFVLYQPPTEKVPE-KW---------------------FRSTKESNFSV----- +PVGLGRG----SPDPLGATWQSN----------------------------G-SVNFALY-SRNAEGVILCLF----KPGAVEP---------------- +-----------------------------------------------------STELDLSPGLHRTGDVWH-AQLES-VE-------------GY-DR-- +YGY-RVRGAVGW-----AT----GNRF--HSRPVLLDPYAHF------------------------------I-APH----------V-----PGQE--- +---------DLPS-------------------------------PALALG-LL----------QP-EEP-----FDW---EGD--YPP--LV--PMEELI +AYKLHVGGFTRDASSGV-----ADAARGTFLGVVE-KVQHLVDMGVNAVILQPIAAFDETL---------------G--SFFPISFFAPASIYGPG---- +GSGVAASRSLKLLVKELHRAGIEVLLDVVYSHTAEGN--DEDPKTVSL-R---GIDN-----ATYYLVDEF--------GQF-KI---P--------EF- +----GVG---NAFNCNHPTVQRMIVDSIRRWVEEFHVDGFCFANAGALVTG-------------------------------------------PHGQQL +SRPLLVE-ALAFDPVLADIKLIADLRSPITG-VHQPVDFPHWS-RWAEWNS---RYRDDVRRFIRGEG-----GQ-LSSFATRLVGSGD----------I +FDD-------------------RRGPGF----SFNHVTSPYG-----YTLADVVSYTGYPNDF-----------RCQNEFGWNAGV---EG--QVADP-- +-GVTDARQRQMRTY-LVALFLSQGVPVLTMGDEYGHTKNGNLDVE---D-----------RNS--VFHWGQMEG--PL--GSQLKELIARLVAFREE--- +-------------------HPELLQRREYLLPHELVWHGYWPAHPEWDNPSSAFLAASLHQYVPVEEPEPDSEYEPEPELEAPERAPFSVPGVSLEAP-S +GAGEDL-PEAVDPLAGLEPVGHGDLYIAFNAHGDQVTLGLPAP-PRGAVWHRLADTSMPVQSY---FVG--------EG----------EALHAP--PPG +APDVVHPHGSYDLAPFSALLLEAKFPKGADGV-RR----------------------------------------------------------------- +-------------------------------------------P------------S-------------YEMQT------------------------- +---------------------------------NKAAPFAVSLSGF------------------------------------------------------ +---------------------------------- +>GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------MIPLGP--------------------------------------------------------------- +---------------------------------------SWLGLLTKVEGSE-----------YDGKLVTVVP--------------------------- +----------------------------------K---AVA--TGVDVIDRTSAAALTDEQIL-DSTPGLG----------------------------- +AILDAEGG----------------------------------------------CVFRVW-APEAQYAELVVL----G-----------PN--------- +--------------TP-DD-----------------------DNVLGMR---------------WEGGNF-AVRAPG-VR-------------AG-A-KY +YFIFH------------HN--G--EKF--YR-R---DARAR------------------------------YT-DF---D--------------GCACYV +-VDPS----YDWA---------------PFEA-----------------------------------------------------------P--TWDKLI +LYQVHVGAFTGRE-----------EGGGTFNALAA-KVDYIKSLGFNAIQLMPVTEFGG----------------LW--GYNPRLLTSTHQAF----GTP +-------AELQSLVDTCHKAGIAVIFDVVLNHGAARL--NS-LW--AY-DGWNPNNG-----GGIYHHG----------AGK-------TP--------- +----W-G---KKFAFGRWEVDDYILEGAEIFLRDFNGDGLRFDSVHNMPWQL------------------------------------------------ +--------LQRMT------WTLHDKYPGKIL-ISEI--------------T---PEDSAAVS-----SAGFDATWIHSTFFET-R-KYMEGD---RA--- +----------------------------LGKVQHVLGLG---SGFSKPT--QMLKYVMGCHDQIGCRNNGAFCHD-----------IGGLHRYPVDHY-G +GRNKWGARAIARMW-YAAMIAASGIPMAFMGTECHHDGWWHVEQNR--------------C-----FNWWFAG--DPL--GQEMMRLVTSANTLRTQSHA +LGA--GGFDTVHF----------------------DDHHKV-------------LGFRRESN---------------------------------DQTLL +VIVNAG-GNQWENSDYGVG--------------------VGDRGIGR-RYVERFNSQDA----SFGGWEGSGNAGRDL------------HE--HG---- +------GRIYINVPKWSTLIFE-VL--------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group +---M----------------------------------------------------------------------------A---VAS------------- +------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP---------------------------------------- +RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPG +SVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLS +G--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP----- +----------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDT +DIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI-- +FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL +-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGS +GFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM +-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF- +----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW--- +--D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------S +ALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-- +-----P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKI +HCR--SK--------------------------------------------------------------------------------------------- +------------------------------------------------------------------VWE------------------------------- +-----------------------VSS-------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii +---MEL---H------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------FVSY----------------------------------------------------------PGA +YRNNTACLG------------LPPFGSH--LVPSPKACLQQQEVMR----------------------------------RCKRRV-------------- +-S-----------------------------------VCRS--SY---------VDVSVSEN------------------------EVKAADDTL----- +FGAPSHG----SPLPFGATMVGD------------------------------GVNFSIH-SSSATSVTLCLF----TSSDLQQ---------------- +--------------------------------------------------GQVTREIPLDPRLNRTGDVWH-ICLPN-IS-------------EE-LL-- +YGY-RMDGPFFP-----ES----GQRF--NPACILVDPYAKA------------------------------V-ISREVYG------V-----PASN--- +---------GNCW-------------------------------PQMGGM-VP----------FN-AEP-----FDW---EGD--ISP--RL--SQKDLI +VYEMHVRGFTRHESSNV-------NYPGTYHGLVE-KLDHLKELGINAIELMPCNEYNELESYAYNAVMGGYKMNFW--GYSTLNFFSPMIRYSKS-GNS +RCGLDAINEFKTLVREAHKRGIEVLMDVVFNHTGEGN--EMGP-TLSF-R---GVDN-----AVFYMLAPK----------G-EFY--N--------YS- +----GCG---NTFNCNHPIVRRFIVECLRYWVIEMHIDGFRFDLATILTRSSSLWD-----------------KANVFGHTEGLEGDL-----LTTGSPL +AEPPLID-MISNDPVLCDVKLIAEPW-DCGG-LSQVGKFPHWG-LWSEWNG---KFRDTVRQFIKGTD-----GV-VGDFANCLCGSPQ----------I +YQD------------------GGRKPWH----SVNFTTAHDG-----FSLADLVSYNKKHNTANGEGN----RDGEDHNNSWNCGE---EG--ELVSL-- +-HVHDLRQRQMRNL-LLALFVSQGIPMMTMGDEYAHTKGGNNNTYCHDN-----------YIN--YFRWDKKET--D---INGFYRFSRLLLNFRRE--- +--------------------CDSLGMEDFLTSDRLSWHGECPNMPDWS-ETSRFVAFTLIDS-------------------------------------- +--------------------RYKELYVAFNASHLAKIVSLPLR-Q-GHKWQPLIDTSKCSPYD---FLA--------MD----------ILDKDV--AVA +QYAHFLKSNIYPMSDYSSIVLHLVP--------------------------------------------------------------------------- +-------------------------------------------Q-------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii +---------------------------------------------------------------------------------------------------- +-----------MQ-----RSLFKGNRCEGN---RASKTAAVEEGGKNVEEALNELVKEAD---------------------------------------- +EGLSDQKTDTDDVVALREALAAAHDRIASAENEKADALKALA--QAEAKVQEYADIVVKGTESALQEMQAAKESFHMELQHILEQKLAVESELVLAKQDA +LELAVSVD--K----------VADYVIKETTAHIAEDAMLKMAAAKTAAAEA-----------ALTVEERIKDATLEAANSMIEETRDAIEKSFAALEAA +K--------------------------------DK---AQK--SEIALFQKMQILDDMVLKEASALGLQQAVSN-LQRQLQAAENEIQRLETEVKATLAR +AEAAEARA----AAADESLKQ-FQEKACQSAQEHEESAR-------------KALEALK-NAGAARLEAARSA----F----KSD---IEALQTALNTVH +K----------AEKSQEKAYA---------------------RRYQALE---------------RALAASE-ALSIT-WK-------------ERALA-- +VEK-LLQRF--RTEGSDAA--G--GNG--GI-E---GVLTGGRMKALLGNDSRKWDLLANGPRRDTPEWMERRIEV-ALQGLPPRKHGQV--QQEADEKF +-LLPGIEDVWCIATAK---------VK-----------------EDVYTQ-HAAEKEAIDEQRRVLEKTLS-----K---RSAR--RP--LKASESGTGS +GYEIVLQGFNWES----------WR-KKWYLELGP-KAADISSCGITTIWFPPPTESVS----------------PQ--GYMPGDLYNLNSAY----GTE +-------DELKNCVEEMHNHDLLVLGDVVLNHRCAQRKGPTGVW-NVF-G---------G-KLAWGPEAIVRDDPNFHGRGNPSSG--D--------FF- +----HAA---PNIDHSQDFVRKDIVGWMKWLRTEIGFDGWRLDFVRGFWGGY-V-K-------------------EYIE-ATA-PVFA----IGEYW--- +--D--SL-A-------------YE---GGNV-CYNQ--------------D---AHRQRIVNWVNATG-----G-TSSAFDVTTKGILH----------A +ALH--------------------NEYWR----LIDPQGKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-- +-----P-RDKLMQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDAITELIAVRRRTGV +HCR--STVKIYH-------------------------ATNQ------------GYVAQIGE-------------------------------------NL +V-MKLG-HLDWNPSK-------------------------QNNL-EG-NWQRCLDSGA--DYQ---IWE------------------------------- +-----------------------RN--------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>NP_001324597.1_isoamylase_1_Arabidopsis_thaliana +---MDA---I------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------KCSS------------------------------------------------------------S +FLHHTKLN--------------------------TLFSNHTFPKISAPNFK-----------P------------------LFRPI-------------- +-S-----------------------------------ISAK--D-----------RRSNEAEN---------------------IAVVEKPLKSD----- +RFFISDG----LPSPFGPTVRDD------------------------------GVNFSVY-STNSVSATICLI----SLSDLRQ---------------- +--------------------------------------------------NKVTEEIQLDPSRNRTGHVWH-VFLRG-DF-------------KD-ML-- +YGY-RFDGKFSP-----EE----GHYY--DSSNILLDPYAKA------------------------------I-ISRDEFG------V-----LGPD--- +---------DNCW-------------------------------PQMACM-VP----------TR-EEE-----FDW---EGD--MHL--KL--PQKDLV +IYEMHVRGFTRHESSKI-------EFPGTYQGVAE-KLDHLKELGINCIELMPCHEFNELEYYSYNTILGDHRVNFW--GYSTIGFFSPMIRYASA-SSN +NFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGN--EKGP-IFSF-R---GVDN-----SVYYMLAPK----------G-EFY--N--------YS- +----GCG---NTFNCNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWD-----------------AANVYGA--DVEGDL-----LTTGTPI +SCPPVID-MISNDPILRGVKLIAEAW-DAGG-LYQVGMFPHWG-IWSEWNG---KFRDVVRQFIKGTD-----GF-SGAFAECLCGSPN----------L +YQ-------------------GGRKPWH----SINFICAHDG-----FTLADLVTYNNKNNLANGEEN----NDGENHNYSWNCGE---EG--DFASI-- +-SVKRLRKRQMRNF-FVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDN-----------YMN--YFRWDKKEE--A---HSDFFRFCRILIKFREY-VI +F-FHESID-LNCLVDRF----------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------------------T-------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------MADPRW-----------------------------------------------NFHRSVI----- +------------------------------KAVKTEEHVAR--EDLPVVRVDPLLAPHQDHLK---------------------YRFSQYEGRKK----- +AIEKYEG----GLEKFSLGFQ-KFGF---------------------NYEDG-YIVYREW-APPAQAAQLIGD---------------FNN--------- +--------------WD-G------------------------WSHPMEK---------------DKYGVWS-VRIPD-VDGK-----------PG-IP-- +HGS-RVKFR--M-----QR--G--DGQWIDR-I---PAWIK------------------------------YATVE------------------------ +-------------AGKM-----GA-SYD------------------GI-L-W----------NPPEDQR-----YKF---E----HPR--PP--KPVVPR +IYEAHVGMSSKEP------------CVASYIDFADNVLPRIKSNNYNTVQLMAVMEHSYYA--------------SF--GYHVTNFFGVSSRS----GTP +-------EELKYLIDRAHSLGLRVLMDVVHSHASNNI--KDGLN--GF-DL-GQQTQ-----ESYFHTGDR--------GYH-------KL--------- +----WDS---RLFNYNNWEVERFLLSNLRWWLEEYQFDGFRFDGVTSMLYHHHGIH------------------MSFSG-RY-----R-----DYFSEAS +DVDAAVY-LMLAN------ELVHTLYPDATT-IAED--------------V---SGMPTLGRPVSEGGVGFD-YRLAMGIPDTWI-KLLK---------E +VA---------------------DEHWS----MAEIAST---L-LNRRYTEKAIAYAESHDQSLVGDKT--LAFM-----LMDKEM---YAGMSALQEQS +IIIERGIALHKMIH-FLTMALGGDGYLNFMGNEFGHPEWIDFPRE-----------GNKWSYDKCRRQWDLVDT--DHLRYKFMNEFDKAMNALEEKYHF +LTL--PL-IVSST----------------------HDKDKV-------------IVFERGD-------------------------------------LV +FVFNFH--PETTYEGYKI----------------------GCDL-PG-KYKIALDSDAF----DFGGRVRVGHDVDHFTSPEGIPGRPETNFNNRP---- +------SSFLVLSPARTCQVYF-KVPK------------------------------------------------DAVQSEEENEDVSQPAASVL----- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----QLISQSAAQKELPFNFMDDIPDFSQ---D +>XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii +---M------------------------------------------------------------------------------------------------ +-----------AS-----AAVIRPHSCSTF---IPGN--------------------------------------------------------------- +----------------RQGVRATG--IQKRLSYT-HFVNAAL--QRDSPVVEDSKRKTVTKQMSASTSDWSNESLKSELGNVLQEKIA-----ALEKQNV +KDINKKAQ--K----------IAEFVLEEISRRSAK---RKDVVEKTSVADA-----------NLTVEKTVKDAASDAAVSVATELEAVADEARKALETA +K--------------------------------EC---AQR--AEETLAQKLLLLEKVPKPELLLSTLEESVAS-LEKQLEIAKDDLSRLQFAADAAKSQ +AKVAEARA----AKADVTIQE-LRQKVGDAAQERASMFN-------------ETVESLR-ATASAREESLKVA----F----EAQ---LAALQAAMEASE +K----------AKKIKEQANL---------------------RRFQAFE---------------NALAASE-ASLLA-WK-------------ERALN-- +SEG-LLQR----------------SDA--EW-S---VVFSDGRMTALLGGD-KIAELVEGGPRREIPDWMKKRIQA-AMQGIPPRHQTTVSADTETSKPL +-ELPSLEEVWSVAKAK---------VKQ----------------DDLFSK-DVVAKETLDKQRRDLEQALGQTTITK---RKGR--VI--KEKPESGTGS +GREIVFQGFNWES----------CR-KRWYQDLAP-KAADLSQSGITTVWFPPPTESVA----------------PQ--GYMPVDLYNLNSAY----GSM +-------DELKHCIQEMHKHDLLVLGDVVLNHRCAYKQNSNGVW-NIF-G---------G-KLSWGPEAIVNDDPNFQGRGNPSSG--D--------IF- +----HAA---PNIDHSQAFVRKDIKEYLDWLKTEIGYDGWRLDFVRGFWGGY-V-K-------------------EYIE-ASE-PAFA----IGEYW--- +--D--SL-L-------------YE---GGNV-AYNQ--------------D---AHRQRIIDWINATG-----G-TSSAFDVTTKGILH----------A +ALH--------------------NEYWR----LIDPRQKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-- +-----P-RDKLLQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDPIVDLIAARNRTGI +NCR--SPVKIFH-------------------------ANND------------GYVAKVGE-------------------------------------QL +V-VKLG-RFDWNPSK-------------------------QNDL-IG-NWKRSVGQGS--DYQ---VWE------------------------------- +-----------------------EE--------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group +---MDS---CA--------------------LFL------------------------------------------------------------------ +-------------STPRP-----PPPLVPAHRRRPLASRSGLRRREGCPCSCASSSSSSG---------------------------------------- +RAGSQDRPPRPWQQKQRTQRPGRGEAIDPVGFLAKHGIS----------------------------------------------------------DRA +FAQFLRDR--Y----------KALKDRRWELHSRLIDLKEASSGFELMGMHR-----------HRQHRVDFMEWAPGARYCSVVGDFNQWSTTENCAREG +HLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGE------------------------------------- +-IKSQKS----RLEVVAKLYE-QMFGP----------NGPQTEEELGDIPDA-ETRYNEW-KALQKDDSASSLPCYDI----IDNGQEFDI--------- +--------------FN-V------------------------ATDRVSF---------------EKFQGKS-PPLAYWVEMRKGRKAWLEKYVPA-IS-- +HKD-KYRVY--F-----NT--P--DGG-LER-I---PAWATYVLPG-------------------SPNLSFFCVDA------------------------ +-------------EGK---------QSY------------------AV-H-W----------DPPPEEI-----YKW---R----FER--PK--VKGSLR +IYECHVGISGSEQ------------KISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYS--------------SV--GYKVTNYFSVSSRF----GSP +-------DDFKKLVDEAHGLGLVVLLDIVHSYASADE--LVGLS--LF-DG----SN-----DCYFHSGKR--------GHH-------KY--------- +----WGT---RMFKYDDIDVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFS-------------------TFTG-AT-----E-----EYYNQYV +DEDALIY-LIIAN------EMLHELHPDIIT-IAED--------------A---TFYPGLCEPTTQGGLGFD-YWVNLSIPEMWL-WHLE---------N +VP---------------------EQEWS----MNKIMRV---L-VNNNS--NMLSYVENHNQSISGRKS--FAEI-----ILYEGK---CSNSSVDND-- +-LIFRASSLLNIIK-LITFTTSGGAYLNFIGNEFAHPKRIEFPMS-----------SNDYSFCLANRQWELLDK--GV--HKHIFNFDKDIMSLDGKERL +ISG--GSPIVHHC----------------------DDTSMI-------------IYFTRGP-------------------------------------FL +FVFNFN--PDASYQLYSV----------------------GVDE-AG-EYQLILNTDET----KYGGRGELTSNQYMKRT-------SDNRVGGCR---- +------NSLELTLPSRSAQVFK-LVRILRI---------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group +---M----------------------------------------------------------------------------A---VAS------------- +------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP---------------------------------------- +RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPG +SVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLS +G--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP----- +----------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDT +DIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI-- +FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL +-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGS +GFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM +-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF- +----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW--- +--D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------S +ALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-- +-----P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKI +HCR--SKIKILK-------------------------AEGN------------LYAAEIDE-------------------------------------RV +T-MKIGA-GHFEPSG-------------------------PT------NWVV-AAEGQ--DYK---VWE------------------------------- +-----------------------VSS-------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens +---MAM---A------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------MAMG----------------------------------------------------------VGG +HRSSSAGAV------------FTSQVCSRGAGVGTKVAVRVDHVVKAIKADDGSGNGKEKNTL--------GWKSTH---LSARPL-------------- +-T-----------------------------------ICRV--AG---------VSSDSANTE---------------------TESKEEAGHRL----- +CGPPLRG----RPLPFGATACEE------------------------------GVNFAVH-SSGATAVALCLF----TESDLQQ---------------- +--------------------------------------------------GVVTKEVPLHPVFNRTGDVWH-IFLPD-LQ-------------SN-LL-- +YGY-RVDGRYIL-----EE----GACY--DARRILVDPYAKA------------------------------V-ISRERYG------T-----LGEG--- +---------GDCW-------------------------------PQMAGM-IP----------DL-HDE-----FDW---DGD--FPP--RI--PQKDLV +IYEMHVRGFTKHASSEV-------EHPGTYIGMIE-KLAYLKALGINAIELMPSHEFNELEYHAYNPMMSDYKMNFW--GYSTINFFSPMIRYASA-GNK +NCGKEAIKEFKSLVREAHKLGMEVLMDVVFNHTAEGN--EMGP-TISF-R---GFDN-----HVYYMIAPK----------G-EFY--N--------YS- +----GCG---NTFNCNHPVVRRFIIDCLRYWVTEMHVDGFRFDLASIMTRASSLWD-----------------KVNVFGRSDELVNDT-----VTTGTPL +NEPPLID-MISNDPVLRGVKLIAEAW-DCGG-LYQVGSFPHWG-VWSEWNG---QFRDMVRLFIKGTE-----GT-AGIFAQCLCGSPH----------L +YQE------------------GGRKPWH----SINFITAHDG-----FTLADLVSYNQKHNVANGEDN----NDGDNHNNSWNCGE---EG--EVVSI-- +-PVQRLRQRQLRNF-FVALMVSQGVPMITMGDEYGHTKGGNNNTYCHDN-----------FIN--YFRWDMKRA--D---PNGFHRFASLMMNFRSG--- +--------------------TECLRLGDFLTGDRLEWHGIFPNTPDWT-ESSKFVAFTLVDQ-------------------------------------- +--------------------QKRELYIAFNASHLPVMVTLPDR-V-GAKWYPLVDTSKPTPYD---FLV--------DD----------VPNIDV--VLA +QTSNFLNSNLYPMISYSSIVLVLKDEDA------------------------------------------------------------------------ +-------------------------------------------F-------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- +>XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii +---MAM---A------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +-----------------------------------PAIV----------------------------------------------------------SGA +IPSASP---------------DAPRVCHRGDAAAASCSDRAPPHCVNLARG--------WHCR--------GKISWWRHCNGGDPV-------------- +-V-----------------------------------SCRA--ME---------TST-SSYSS-----------------------SESVDVKKL----- +AGSPKRG----RPLPFGATPVEG------------------------------GVNFSVH-SSGAIAVSLCLF----TEEDLQK---------------- +--------------------------------------------------GRVSKEFPLHPVFNRTGDVWH-VYLPD-VC-------------PN-LL-- +YGY-RLNGKFSL-----EE----GCCY--DLSRILVDPYAKA------------------------------V-VSRGKYG------A-----LGPG--- +---------NSCW-------------------------------PQMAGM-VP----------QL-NDE-----FDW---QGD--SPP--RH--KQKDLI +IYELHMRGFTQHPSSNV-------DFPGTYLGALE-KLPHLKDLGINAIELMPIHEFNELEYYSYNPVMGDHKMNYW--GYSTINFFSPMTRYASS-GIQ +NCGRDAIKEFKTFVREAHKLGIEVFMDVVFNHTAEGN--EMGP-IISF-R---GLDN-----RVYYMTAPK----------G-EFY--N--------YS- +----GCG---NTFNCNHPVVRRFIVDCLRYWVLEMHIDGFRFDLASILTRASSLWD-----------------KANVFGTSEDVDGDS-----VTTGTPL +SEPPLID-MISNDPVLRGVKLIAEAW-DSGG-LYQVGNFPHWG-IWSEWNG---QYRDTVRLFIKGTD-----GL-AGAFAQCLCGSPH----------L +YQD------------------GGRKPWH----SVNFVTAHDG-----FTLLDLVSYNSKHNIANGESN----NDGETHNNSWNCGE---EG--ELVSI-- +-RVRRLRHRQLRNF-LVALMVSQGVPMVTMGDEYAHTKGGNNNTYCHDN-----------AIN--YFRWDKLRT--D---PTGLFRFSRHLFNFRRQ--- +--------------------SESLGLGDFPTAERLEWHGVVPETPDWS-ETSRFVAFSLVDA-------------------------------------- +--------------------KKRELYIAFNTSHLPVLVTLPER-P-GFKWQPVVDSSKPAPYD---FLA--------DD----------IPDLAT--AYA +QYSPLLNAQIYPMISYSSVILVLVPLNE------------------------------------------------------------------------ +-------------------------------------------D-------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------- \ No newline at end of file diff --git a/runs/BEAST/alignment_files/g41182_select.fasta b/runs/BEAST/alignment_files/g41182_select.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a6ac8f884fcb907ab3d8ebde8d5f8e61c9d6e68e --- /dev/null +++ b/runs/BEAST/alignment_files/g41182_select.fasta @@ -0,0 +1,546 @@ +>CBr_g41182_beta-amylase_3 +------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR-- +---------------------------------------------------------------------------------------------------- +---------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIAR +TETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETS +TESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS- +-PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGA +PKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPT +GRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G--- +---T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRR +LGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVV +EVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFF +LEWYSGALLQHGERMLRAACRAFF-DV------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS---------------------------------------------- +-PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLA +AARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR +-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----G +EAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD--------------------------- +-----------------------------------LDLDFDF------------------------DFDFD----------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------L-----------------------------------------D +>EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii +---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA-- +---------------------------------------------------------------------------------------------------- +---------ITGRKVSNLASHKMVSRSSTSS--------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------------------------T--A-A-------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------AVEEMTKE----- +-----EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKE +SDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIA +EIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFF +LKWYSKVLIEHGDRVLMLAKLAFE-GF------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNA +AWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA----- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------K +>EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKK +HGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIV +EIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFF +LEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAA +AKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------- +>GAQ79600.1_beta-amylase_Klebsormidium_nitens +------------------------------------------------------------MSSGTPP--------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S-------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------------------------------------------------------------------PLPG-S--- +---G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHS +MGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIV +EVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFF +LSWYAENLAAHGDRVLGAAAAVFQ-GT------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +----------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQT +AARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLED +PKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL---------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------QMQ---L +>KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii +------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM------------ +----------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF--- +---CRR-GFSVRGLVEA----------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---TK--RQPR--SIVDV---------------CLP---------C------------------------------------------------------ +-----------------------------------------------SPSLFEDGD-------------------------------------------- +----------------------------------------------------------------------------------------LFLQQKV-H--- +----RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR----------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------- +>KAJ0630873.1_putative_beta-amylase_Helianthus_annuus +---------------------------------------------------------------------------------------------------- +------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT--- +---PR--RLRAKNSLQDAHITREK---------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------------------------ITSPFEGMFDEQ--------------------------------------- +---------------------------------------------------------------------------------------KEKFHALS-S--- +---------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQK +HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIV +EIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFF +MQWYSGKLVQHGDRILNSANAIFT-GT-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMA +VQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL +-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L--V--- +>NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays +---------------------------------------------------------------------------------------------------- +------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA--- +---PSR-RPRALRAAAATATAPSP---------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +----------------------------------------------------ATHRAPAEA--------------------------------------- +---------------------------------------------------------------------------------------AELLHGGG-A--- +---G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVER +AGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIA +EIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFF +LEWYSGMLLEHGDRVMDAAEAVFG-GT-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAA +TSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL +-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------A--L--- +>NP_189034.1_beta-amylase_1_Arabidopsis_thaliana +---------------------------------------------------------------------------------------------------- +------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA--- +---MNR-NYKAHGTDPSPPMSPILGAT------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------RAD---------------------------------------------------- +-----------------------------------------------LSVACKAFAVENGI--------------------------------------- +---------------------------------------------------------------------------------------GTIEEQRT-Y--- +---R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKK +LGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIV +EIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFF +LSWYSQMLLDHGERILSSAKSIFE-NM-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALA +TLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC +-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L-TH--- +>OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis +------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR-- +---------------------------------------------------------------------------------------------------- +---------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +--------------------------------------------------------------------------------------------FNVCCKS- +-CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V-------------------------------------------------- +------------------------------------------------KIQERLAVKSAQIIG------------------------------------- +------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H--- +-----ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVRE +AGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTIT +EIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFF +LKWYSQVLIEHGDNVLTLANLAFE-GY------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNA +AWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------S +>PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------ML----------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------SRIYQA------------------S----------------------------------DA--RM-A--- +---P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVAS +KGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVIT +EVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFF +LNWYSGLLNQHADRLLGAARQVLS-AR------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------CR-------------PRTMREARELSDG---------------------------------------------- +-GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLST +AARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP----- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------S +>PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha +------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL-- +---------------------------------------------------------------------------------------------------- +---------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +--------------------------------------------------------------------------------------------LPISSNS- +-R--------RDSPRMI-----------R------AEAAQQEGDV--A-V-------------------------------------------------- +------------------------------------------------RTQELTVEKPVES--------------------------------------- +---------------------------------------------------------------------------------------TEDDQVKV-H--- +-----ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVRE +AGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTIT +EIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFF +LKWYSQVLIEHGDNVLTLANLAFE-GY------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNA +AWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI---- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------H +>XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii +------MPTS-------------------------------------------------LPQC-----------PS------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR +-------------------------Q-------------------------------------------------VTHPTAHPRTSR------------- +---------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS----------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y--- +---P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAA +AGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVIT +EVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFF +LSWYSNMLLEHADRVLSSAAEVLN-KH------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------GR-------------PRVFNSMRDASNG---------------------------------------------- +-HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEA +AEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------A +>XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii +------MSSSS----------------------------------------------------------------------------------------- +--------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE--- +---EWW-KQQPQQHRSSSPISCFP---------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------------------------------------------------------------------------SQVASHG- +-PALA------PDFFEE-----------R--------PFELQ--HGIS---------------------------------------------------- +-----------------------------------------------SPSPSGF----PSK--------------------------------------- +---------------------------------------------------------------------------------------IAPPVEKE-H--- +---S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKK +HGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIV +EIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFF +LEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAA +AKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS +--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L--V--- +>XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa +---------------------------------------------------------------------------------------------------- +------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT--- +---TR--RLRTRNSIQDAQLSREK---------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------------------------MISPFEGMYDAQ--------------------------------------- +---------------------------------------------------------------------------------------KEKFHALS-S--- +---------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQK +HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIV +EIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFF +MEWYSGKLLEHGDKILGSADRIFR-GT-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLA +VKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ +-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L--L--- +>XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens +------MSIG------------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRD +CKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTIT +EIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFF +LDWYSRALIEHGDNLLTVARHALG-NT------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRA +AWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ----- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------C +>XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens +---------------------------------------------------------------------------------------------------- +-------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP--- +---GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +--------------------------------------------------------------------------------------------SLS-SEE- +-WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM---------------------------------------------------- +-----------------------------------------------DTMFPEHKSLLDWD--------------------------------------- +---------------------------------------------------------------------------------------NTADEWKE-H--- +---A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRK +HGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VII +EIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFF +MEWYSEMILAHGERLLASASGIFK-GT-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALA +TRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW +--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S---------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------LM-Y--- +>XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii +------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA-- +---------------------------------------------------------------------------------------------------- +---------ITARKVSNLASHKMVSRSSTSS--------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +--------------------------------------------T--A-A-------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------AVEEMTKE----- +-----EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKE +SDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIA +EIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFF +LKWYSKVLIEHGDRVLMLAKLAFE-GF------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNA +AWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG----- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------V +>XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group +---------------------------------------------------------------------------------------------------- +------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT--- +---TSL-RMKRQAACE------------------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------P------VA------------------------------------------- +----------------------------------------------------------------------------------------CRAVAR------ +-----HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARK +TGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIV +EIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFF +LSWYSQMLLEHGERVLSGATSVFGDGA-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAA +ARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP--- +-RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L-RS--- +>XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii +---------M---------------------------------------------------RASIDRQCC---AAASSPA-S------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL----------------------- +---------------------------------------------------------------------------------------T------------ +----------SPTPVAA-----------G------ATARA------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRD +EGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIV +DVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFF +LQWYSDMLMQHADSVLGIARDVLL-PAD------------------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYG +NGYGNGNGIWRG---------------------------------------SPAAAAEPPR--------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTV +AAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV +-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSN +VAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA--------------------------- +-----------------------------------TGAAGGGGDA------------------GMTAAAPT----------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------GSAGALQL----------------------------------V +>XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii +------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y------------------ +---------------------------------------------------------------------------------------------------- +------------L--------------------------------------------------------------------------------------- +------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS---------- +-------------------------F-----------------------------------------------------GQSGVLR-P------------ +----------HPRRYSQ-----------N------AFGTS------------------------------------------------------------ +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQ +TGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVID +EVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFF +LEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGM +NSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCC +TYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTR +GVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAH +PLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTT +TGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQA +QLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGG +GAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQL +AARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG +-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNG +YGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP--------------------------- +-----------------------------------EMLLPGYQSL------------------WMRFMGKL----------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------LA----------------------------------------S +>XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis +---------------------------------------------------------------------------------------------------- +------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI--- +---IL--RRRLIKSSMQSEINVQYN--------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---LA-----P---------------------------PPQK--SI------------------------------------------------------ +-----------------------------------------------MMTSSPFEGTYEEQ--------------------------------------- +---------------------------------------------------------------------------------------KEKFHALS-T--- +---S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQR +HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVV +EIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFF +MEWYSGKLLQHGDRILGSADSIFR-GT-G----------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMA +VKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL +-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV--------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------L--V--- \ No newline at end of file diff --git a/runs/BEAST/alignment_files/pap11_align_name.fasta b/runs/BEAST/alignment_files/pap11_align_name.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5a56651bf3c1b5b0fb857dda19e1a13085561b90 --- /dev/null +++ b/runs/BEAST/alignment_files/pap11_align_name.fasta @@ -0,0 +1,308 @@ +>CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase +MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGTLRSSGATAGATAGG------ +------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAASKG----------------STERRPFDGLLNP------RC +SACLLLGRR--TLAMSRKRR------------------GADRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVR +DLVLVSSARQFAEGLMRNSR--GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAK +EEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG---VGEGGGANG-AES-SATLRE +LLEEAG-V-Q---------------------------------------------P-------IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG +--DKT--DGHLYVAEAVEKGAVAVVASKE----------EE-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLL +RGMYNAMGLETGLVGT------INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSAC +VMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNADWFVARGNP-NVPVVTFGME +--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAIDAPLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHT +PDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMAKIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG------------ +---------------------FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVD +ALHA-AGIDTSEFPWRFVNQ---------------------------- +>KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus +MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---GVGSSGG-VSVGP-------- +--------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQARRR----------------DEDTEEFDDYIDP------AK +AEPMEAMDP--D--------------------------EEEMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG-------- +-----D--QVDIEGEEEDV------------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPR +VIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG------EEPLVE-PTY-RMTLGE +LLDEAR-V-T---------------------------------------------P-------IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG +--LKS--DGHEFANQAIEKGAIAVISCT------------------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLI +RSMYEAMGSQVGLLGT------INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTC +IMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHASYFVEQGNP-DVPVVTFGME +--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVEAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHT +PDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMAKIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED------------ +---------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVD +ALHA-AGVDTSEFPWRVPES---------------------------N +>PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha +MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSRKIVRRQFVRSEQ-------- +---------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRAVPK------------------NAKEFDDYIDP------AN +AEPLEVED---D--------------------------EEGISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID-------- +-----P--EDYKSAQDLQEEEEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGK +VVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL---L--DDEFKP-PVY-KMTLAE +LLDEAK-V-T---------------------------------------------P-------LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG +--HSS--DGHLYSSEAVERGASVLVVSK------------------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLI +RSMYEAMGLTTGLLGT------IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEAC +VMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNSSYFVAQGNP-AVPVVTFGLE +--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVEAPLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHT +PDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMAKIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD------------ +---------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMD +ALHA-AGVDTSEFPWRVLES---------------------------T +>GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens +------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP-------LGIARAT----------- +-----------------------------------------------------------NAADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EE +GDFDEFLEE-VD--------------------------EPE-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG-------- +--------LVDVVKDD------------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED----------------------------- +-DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQF--LDEVEE-ADY-TIALGE +LLENAG-V-K---------------------------------------------P-------ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG +--LST--DGHLYAAEAVEKGASAVIASE------------------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIV +RGIIEEMGQQTGLLGT------IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSAC +VMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNAQWFISQGNP-DVPVITFALE +--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIGAPLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHT +PDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMGKIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND------------ +---------------------FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLD +LLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM +>XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii +MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP----------------------------------- +----------------------------------------------------ANKCHAPRIAP----------------VAPAPARQTLCAARRGRPPGG +P----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLDPHTRRLMGI--------------------------------------------------- +-----------------AEQREDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------ +------------------------------------AADEDVG--------------------------------EP---S--TSYPEP-PDR-AFRAPD +LFGEAA-L-F--------------------------------------------EA-------ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEG +L--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHVGEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLV +RGILEELGQTVGLMSS------IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVA +VVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAAEQLLERLGG-AVPVVTYGVV +--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAART +PEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT-- +---P------------LWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLK +YLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD +>XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis +MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR----------------------------------- +----------------------------------------------------DELLRIKE----------------------------DL---------- +---------------------------DVGLNTDEDEELAGITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS---------- +---------SDDDEEEEEEEEEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S------ +--IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP---Q--ARFPEP-PAR-SYRLAE +LLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST-------AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPS +A--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLS +RGMFEETAERCGMIGTI------EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVA +LVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSAD +--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSAST +PEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV-- +---P------------HWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLP +YLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R +>XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii +-----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------ARVCSDRSVAVCAT------- +--------------RSRG----------------------------------------RKPRR----------------GGDGEGEHRYADS------AG +NDPPEAEGP--E--------------------------E----AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG-------- +---------------------------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES--------- +---DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL---Q--ESVIKE-PRF-KMTLTE +LLDEAK-V-V---------------------------------------------P-------LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG +--ETS--DGHSFVPQAAEQGAVVIVATK------------------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLL +RSIYESMGLKTGLIGT------ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVC +VMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNAGYFVSLGNP-KVPVVTFGME +--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHT +PDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMAKIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS------------ +---------------------YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVD +MLHA-SGIDTSEIPWKFPGHK--------------------------L +>GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68 +MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPAMRRHAPQATSQR-------- +-----------------------------------------------AKPRGARRRVACQAGS----------------GRGEGSGSEFPNP------AE +LPPKAAEEE--A--------------------------RRDGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA-------- +-----A--VAEEEAEGEADG----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE--- +---VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA---M--AEAGEEGGAG-ALTVAE +ILEDAG-V-E---------------------------------------------P-------LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG +--QQT--DGHMYVGDAAERGAAAVVLSRG-----------------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLI +KSIYDAMGVSAGLLGT------ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEAC +VMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHAEFFMSRGGA-DVPTITFSLE +--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAINAPLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHT +PDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMAKIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG------------ +---------------------FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVD +ELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y +>KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii +MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------FRSSFYQVSFKD-------- +-----------------------LSS--------------------------------QQFFR----------------ACFAMSSKEIPNP------SE +ADPPEVEDFDEE--------------------------APDVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD-------- +-----P--NGEDEDEDEDKIEGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK--- +-----EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE---D--LEQIKE-PKF-SMTLSE +LLDEAR-V-V---------------------------------------------P-------IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIG +TPSSS--TENPPLTEAIEKGAVVVVASME----------V------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLV +KSMFEAMEKKTGLISS------IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGAC +VMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYAPFVIAQGSA-DVPVITFSMN +--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAINIPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHART +PDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMAKIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD------------ +---------------------YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVD +ALHA-AGIDTSEFPWRLPESH--------------------------- +>KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum +MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRGRRSPSSLQSVSFSPASIACC +KDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRAKQP----------------RRQRSEFDDYIDP------AK +AEPFEAEDE--E--------------------------DEEMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA-------- +-----A--DAEEEEEEEEEE--EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSL +RLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE------DEEMSE-PHY-RMTLGE +LLDEAR-V-T---------------------------------------------P-------IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG +--LSL--DGHDFATQAVERGAVAIVASGE----------IA-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLL +RSMYEAMGLQTGLLGT------INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDAC +IMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNAAYFINQGNP-DVPVVTFGIE +--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVEAPLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHS +PDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMAKIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD------------ +---------------------YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVD +ALHA-AGVDTSEFPWRVPE----------------------------S +>XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens +MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFGRGVQRWRLSVAA-------- +--------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRTRRR----------------NDDTKEFDDYINP------AK +AEPMEAMDA--E--------------------------DEDMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG-------- +-----D--QVGEEEEEEEDE--EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------ +PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE------GEAMME-PTY-RMTLAE +LLDEAR-V-T---------------------------------------------P-------VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG +--LKS--DGYEFAHQAIEKGAVAIVSSS------------------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLI +RSIYEAMGLQAGLLGT------INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDAC +IMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQSDYFVTQGNQ-DVPVVTYAMG +--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANT +PDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMAKIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD------------ +---------------------YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVD +DLHA-AGVDTSEFPWRVPES---------------------------N +>WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +----------------------------------------------------------------------------------------------MVKLGQ +LLASVPEVVT---------------------------------------------AAPWLAQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG +--TRV--DGGEFWSGALGAGAIAAVVSEKALQ---------------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLI +EYFLNQQQRASALLGT------LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYA +VMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYGQKLIDRL-P-SAQVYTYSVT +--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLGLDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHT +PDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW-------------------- +---------------------------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY +-S---------------------------------------------- +>XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus +-MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------RLPPFFHRT----------- +-----------------------------------------------------------NLTL----------------FAINRDGKHYPNP------AD +IDPPEAPED--T--------------------------VHGVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV-------- +-----E--DAPDESAST----------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD--- +----EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK---G--EVRIVE-PKC-KMTLAE +LLDESK-V-V---------------------------------------------P-------VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG +--KKT--DGHLFLTEADKRGAVAVVASKE----------I------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLI +KGMYEVMGLRTGMITN------VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEAL +VMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASAPLFIAQGNQ-DVPVVTFALE +--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVEAPLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANT +PDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMTKIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD------------ +---------------------YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVD +ELHQ-SGIDTSEFPWRLPESY--------------------------- +>OAP16898.1_PDE316_Arabidopsis_thaliana +MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------VLLPFSRNSR---------- +-----------------------------------------------------------TLTV----------------AAGPARRNSYPNP------AD +DDPPEAPED--S--------------------------MHGVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV-------- +-----E--DAAETGR------------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGN +EEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE---S--KARIVE-PKF-KMSLAE +LLDESK-V-V---------------------------------------------P-------IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG +--SEN------FLSEADKRGAVAVVASKE----------I------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLI +KSLYEAMGVRTGMFST------VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESL +VMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNAAFFVQQGNP-NVPVVTFAME +--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANT +PDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD------------ +---------------------YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVD +ELHQ-AGIDTSEFPWRLPESH--------------------------- +>MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068 +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------------------------------------------------------MKLRD +LLAKVSGISQ---------------------------------------------I-------P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG +--TRV--DGGEFWQSALEAGAIAALISPQSAA---------------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLI +EFFLNQSQLPTALLGT------LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYA +VMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYGKRLIEAL-D-SDKVWSYSVS +--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLGLNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHT +PDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMGKIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI-------------------- +---------------------------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL +-G---------------------------------------------- +>WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237 +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------------------------------------------------------MKIRE +LLAVINHLEY---------------------------------------------S--------------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG +--TRV--DGGEFWQSAINAGAVAAIISPEAAL---------------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLI +EYFLNQASLFTALFGT------LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFG +VMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYGQRLIARL-N-KQQVWTYSVN +--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFGIDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHT +PDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMGKIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI-------------------- +---------------------------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKM +LV---------------------------------------------- +>WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +-----------------------------------------------------------------------------------------------MKLRE +LLTAVDSVEQ---------------------------------------------L-------P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG +--TRV--DGGEFWPSAIASGAVAAIISPQAAQ---------------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLI +EFLLNKANLATALMGT------LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFG +VMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYGERLIASL-N-PEQVWSYSVN +--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHT +PDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMGKIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK-------------------- +---------------------------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL +-G---------------------------------------------- +>WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M +----------------------------------------------------M----------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +---------------------------------------------------------------------------------------------------- +----------------------------------------------------------------------------------------S-GIP-L----- +-TILAE-K-L--------------------------------------------NA-------SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKG +S--TV--DGHRFVGDVMRRGAAGVISEFEAPD-------------------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLC +YALAEAEGIKPAMLTT------VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFA +AMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWGIRLADELRANGQKVMTFSQN +L-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELGYGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHT +DDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMGRIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY-------------------- +--------------------------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRK +D----------------------------------------K------ +>QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus +MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR----------------------------------- +-----------------------------------------------------------V-------------------------------PA------- +----------------------------------SSSPRRGRTT----SGSR------------------------------------------------ +--------------------------------LRGG------FPVRR------------VLEG--------------T--R------------------- +-------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ------PAGAVV-PRV-S----- +-VALSD-I-L--------------------------------------------P--------EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEG +T--QN--DGHDFAAQAAENGAIAVVASKQVDL-E-----------------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLV +RGILEEAGFITGMVGT------VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAV +VMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVSASFIEVARRRGLKVLTFSAN +A-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMGYPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHT +PDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMGKIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDP +VYIPETTTRRWEKFKYIGNRSRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMV +KIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------ +>KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2 +MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR----------------------------------- +----------------------------------------------------CTRSHAVE----------------------------QSDAAL------ +DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLDAI--IS------------------------------------------------------ +--------------------QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------ +------------------------------------EPQDDEE--------------------------------DP---D--ASYPER-PSR-SYTLAS +LLKLAD-I-S--------------------------------------------LP-------EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITK +P--DE--DVWGCVHEALQRGASAVIAGDIFEAEE-----------------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLI +RGMFDELDKSAGLIGT------VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAAC +VLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYADDM-KRFAA-AVPVVTYAIS +--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSINVPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANT +PGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMGEIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV-- +---S------------HTVREFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLY +RLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K +>PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis +MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL----------------------------------- +----------------------------------------------------ASVGLACPAPH----------------VESGRKLSVVAKARRGRPPAQ +PEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELDPMSRRLV----------------------------------------------------- +--------------------EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------ +------------------------------------AADGDAG--------------------------------EP---S--TSYPEP-PDR-EFRASD +LFGEAG-L-M--------------------------------------------DA-------ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPG +L--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWSGADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLI +RGVLEELGQTVGLMSN------IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVA +VLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQAAGFLKRLDG-VVPVVTYSLT +--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALKAPLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAART +PEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMGAVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT-- +---P------------LWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLK +YLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E +>OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri +MGAGR---------------------------------------------------RRGGGS-------------------------------------- +---------------------------------------------------------TRRA-------------------------------GRT-VG-- +----------------------------ARW--------------------------------------------------------------------- +--------------------------------TREG------DGVDHGRAG----ARLEVVRA--------------S---------------------- +----------------------------------------------------------------------------A---A--NA--DA-EVDAEALLRE +IFADAE-V-D---------------------------------------------A-------EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVG +G---A--AGASLAREAVAAGAVAIVASERVE--G-----------------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLV +KSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAA +VMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDAD-L-CREYASGVPVVTYSTQ +IGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANT +PEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV-- +---H------------ENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIG +AIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G \ No newline at end of file diff --git a/runs/BEAST/alignment_files/pap11_clustalw_aln.txt b/runs/BEAST/alignment_files/pap11_clustalw_aln.txt new file mode 100644 index 0000000000000000000000000000000000000000..561bdb42ac1309c51331a8e5bc68308d44992f4d --- /dev/null +++ b/runs/BEAST/alignment_files/pap11_clustalw_aln.txt @@ -0,0 +1,388 @@ +CLUSTAL W (1.83) multiple sequence alignment + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGT +KAG0583458.1 MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---G +PTQ33238.1 MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSR +GAQ90408.1 ------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP----- +XP_001696935.2 MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP--------------- +XP_005851510.1 MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR--------------- +XP_024517730.1 -----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------A +GJP33877.1 MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPA +KAH7279093.1 MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------ +KAH9541295.1 MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRG +XP_024364396.1 MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFG +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 -MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------ +OAP16898.1 MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------ +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 ----------------------------------------------------M--------------------------- +QDZ19900.1 MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR--------------- +KAA6418459.1 MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR--------------- +PNH05610.1 MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL--------------- +OUS46025.1 MGAGR---------------------------------------------------RRGGGS------------------ + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase LRSSGATAGATAGG------------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAA +KAG0583458.1 VGSSGG-VSVGP----------------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQA +PTQ33238.1 KIVRRQFVRSEQ-----------------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRA +GAQ90408.1 --LGIARAT----------------------------------------------------------------------N +XP_001696935.2 ------------------------------------------------------------------------ANKCHAPR +XP_005851510.1 ------------------------------------------------------------------------DELLRIKE +XP_024517730.1 RVCSDRSVAVCAT---------------------RSRG----------------------------------------RK +GJP33877.1 MRRHAPQATSQR-------------------------------------------------------AKPRGARRRVACQ +KAH7279093.1 FRSSFYQVSFKD-------------------------------LSS--------------------------------QQ +KAH9541295.1 RRSPSSLQSVSFSPASIACCKDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRA +XP_024364396.1 RGVQRWRLSVAA----------------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRT +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 RLPPFFHRT----------------------------------------------------------------------N +OAP16898.1 VLLPFSRNSR---------------------------------------------------------------------T +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 -------------------------------------------------------------------------------- +QDZ19900.1 -------------------------------------------------------------------------------V +KAA6418459.1 ------------------------------------------------------------------------CTRSHAVE +PNH05610.1 ------------------------------------------------------------------------ASVGLACP +OUS46025.1 -----------------------------------------------------------------------------TRR + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase SKG----------------STERRPFDGLLNP------RCSACLLLGRR--TLAMSRKRR------------------GA +KAG0583458.1 RRR----------------DEDTEEFDDYIDP------AKAEPMEAMDP--D--------------------------EE +PTQ33238.1 VPK------------------NAKEFDDYIDP------ANAEPLEVED---D--------------------------EE +GAQ90408.1 AADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EEGDFDEFLEE-VD--------------------------EP +XP_001696935.2 IAP----------------VAPAPARQTLCAARRGRPPGGP----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLD +XP_005851510.1 ----------------------------DL-------------------------------------DVGLNTDEDEELA +XP_024517730.1 PRR----------------GGDGEGEHRYADS------AGNDPPEAEGP--E--------------------------E- +GJP33877.1 AGS----------------GRGEGSGSEFPNP------AELPPKAAEEE--A--------------------------RR +KAH7279093.1 FFR----------------ACFAMSSKEIPNP------SEADPPEVEDFDEE--------------------------AP +KAH9541295.1 KQP----------------RRQRSEFDDYIDP------AKAEPFEAEDE--E--------------------------DE +XP_024364396.1 RRR----------------NDDTKEFDDYINP------AKAEPMEAMDA--E--------------------------DE +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 LTL----------------FAINRDGKHYPNP------ADIDPPEAPED--T--------------------------VH +OAP16898.1 LTV----------------AAGPARRNSYPNP------ADDDPPEAPED--S--------------------------MH +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 -------------------------------------------------------------------------------- +QDZ19900.1 -------------------------------PA-----------------------------------------SSSPRR +KAA6418459.1 ----------------------------QSDAAL------DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLD +PNH05610.1 APH----------------VESGRKLSVVAKARRGRPPAQPEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELD +OUS46025.1 A-------------------------------GRT-VG------------------------------ARW--------- + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase DRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVRDLVLVSSARQFAEGLMRNSR +KAG0583458.1 EMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVDIEGEEEDV- +PTQ33238.1 GISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID-------------P--EDYKSAQDLQEE +GAQ90408.1 E-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG----------------LVDVVKDD---- +XP_001696935.2 PHTRRLMGI--------------------------------------------------------------------AEQ +XP_005851510.1 GITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS-------------------SDDDEEEEEEE +XP_024517730.1 ---AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG---------------------------- +GJP33877.1 DGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA-------------A--VAEEEAEGEADG +KAH7279093.1 DVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD-------------P--NGEDEDEDEDKI +KAH9541295.1 EMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA-------------A--DAEEEEEEEEEE +XP_024364396.1 DMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVGEEEEEEEDE +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 GVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV-------------E--DAPDESAST--- +OAP16898.1 GVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV-------------E--DAAETGR----- +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 -------------------------------------------------------------------------------- +QDZ19900.1 GRTT----SGSR-------------------------------------------------------------------- +KAA6418459.1 AI--IS-------------------------------------------------------------------------- +PNH05610.1 PMSRRLV------------------------------------------------------------------------- +OUS46025.1 -------------------------------------------------------------------------------- + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase --GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAK +KAG0583458.1 -----------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPR +PTQ33238.1 EEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGK +GAQ90408.1 --------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED----------------------------- +XP_001696935.2 REDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------ +XP_005851510.1 EEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S------ +XP_024517730.1 -------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES--------- +GJP33877.1 ----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE--- +KAH7279093.1 EGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK--- +KAH9541295.1 --EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSL +XP_024364396.1 --EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------ +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 -------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD--- +OAP16898.1 -------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGN +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 -------------------------------------------------------------------------------- +QDZ19900.1 ------------LRGG------FPVRR------------VLEG--------------T--R------------------- +KAA6418459.1 QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------ +PNH05610.1 EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------ +OUS46025.1 ------------TREG------DGVDHGRAG----ARLEVVRA--------------S---------------------- + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase EEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG--- +KAG0583458.1 VIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG--- +PTQ33238.1 VVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL--- +GAQ90408.1 -DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQ +XP_001696935.2 ------------------------------------AADEDVG--------------------------------EP--- +XP_005851510.1 --IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP--- +XP_024517730.1 ---DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL--- +GJP33877.1 ---VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA--- +KAH7279093.1 -----EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE--- +KAH9541295.1 RLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE--- +XP_024364396.1 PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE--- +WP_194018526.1 -------------------------------------------------------------------------------- +XP_021969154.1 ----EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK--- +OAP16898.1 EEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE--- +MBF2019582.1 -------------------------------------------------------------------------------- +WP_190370564.1 -------------------------------------------------------------------------------- +WP_190950786.1 -------------------------------------------------------------------------------- +WP_211627413.1 -------------------------------------------------------------------------------- +QDZ19900.1 -------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ--- +KAA6418459.1 ------------------------------------EPQDDEE--------------------------------DP--- +PNH05610.1 ------------------------------------AADGDAG--------------------------------EP--- +OUS46025.1 ----------------------------------------------------------------------------A--- + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase VGEGGGANG-AES-SATLRELLEEAG-V-Q---------------------------------------------P---- +KAG0583458.1 ---EEPLVE-PTY-RMTLGELLDEAR-V-T---------------------------------------------P---- +PTQ33238.1 L--DDEFKP-PVY-KMTLAELLDEAK-V-T---------------------------------------------P---- +GAQ90408.1 F--LDEVEE-ADY-TIALGELLENAG-V-K---------------------------------------------P---- +XP_001696935.2 S--TSYPEP-PDR-AFRAPDLFGEAA-L-F--------------------------------------------EA---- +XP_005851510.1 Q--ARFPEP-PAR-SYRLAELLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST---- +XP_024517730.1 Q--ESVIKE-PRF-KMTLTELLDEAK-V-V---------------------------------------------P---- +GJP33877.1 M--AEAGEEGGAG-ALTVAEILEDAG-V-E---------------------------------------------P---- +KAH7279093.1 D--LEQIKE-PKF-SMTLSELLDEAR-V-V---------------------------------------------P---- +KAH9541295.1 ---DEEMSE-PHY-RMTLGELLDEAR-V-T---------------------------------------------P---- +XP_024364396.1 ---GEAMME-PTY-RMTLAELLDEAR-V-T---------------------------------------------P---- +WP_194018526.1 --------------MVKLGQLLASVPEVVT---------------------------------------------AAPWL +XP_021969154.1 G--EVRIVE-PKC-KMTLAELLDESK-V-V---------------------------------------------P---- +OAP16898.1 S--KARIVE-PKF-KMSLAELLDESK-V-V---------------------------------------------P---- +MBF2019582.1 ---------------MKLRDLLAKVSGISQ---------------------------------------------I---- +WP_190370564.1 ---------------MKIRELLAVINHLEY---------------------------------------------S---- +WP_190950786.1 ---------------MKLRELLTAVDSVEQ---------------------------------------------L---- +WP_211627413.1 --------S-GIP-L------TILAE-K-L--------------------------------------------NA---- +QDZ19900.1 ---PAGAVV-PRV-S------VALSD-I-L--------------------------------------------P----- +KAA6418459.1 D--ASYPER-PSR-SYTLASLLKLAD-I-S--------------------------------------------LP---- +PNH05610.1 S--TSYPEP-PDR-EFRASDLFGEAG-L-M--------------------------------------------DA---- +OUS46025.1 A--NA--DA-EVDAEALLREIFADAE-V-D---------------------------------------------A---- + + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase ---IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG--DKT--DGHLYVAEAVEKGAVAVVASKE----------E +KAG0583458.1 ---IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG--LKS--DGHEFANQAIEKGAIAVISCT------------ +PTQ33238.1 ---LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG--HSS--DGHLYSSEAVERGASVLVVSK------------ +GAQ90408.1 ---ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG--LST--DGHLYAAEAVEKGASAVIASE------------ +XP_001696935.2 ---ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEGL--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHV +XP_005851510.1 ---AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPSA--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------ +XP_024517730.1 ---LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG--ETS--DGHSFVPQAAEQGAVVIVATK------------ +GJP33877.1 ---LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG--QQT--DGHMYVGDAAERGAAAVVLSRG----------- +KAH7279093.1 ---IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIGTPSSS--TENPPLTEAIEKGAVVVVASME----------V +KAH9541295.1 ---IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG--LSL--DGHDFATQAVERGAVAIVASGE----------I +XP_024364396.1 ---VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG--LKS--DGYEFAHQAIEKGAVAIVSSS------------ +WP_194018526.1 AQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG--TRV--DGGEFWSGALGAGAIAAVVSEKALQ-------- +XP_021969154.1 ---VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG--KKT--DGHLFLTEADKRGAVAVVASKE----------I +OAP16898.1 ---IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG--SEN------FLSEADKRGAVAVVASKE----------I +MBF2019582.1 ---P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG--TRV--DGGEFWQSALEAGAIAALISPQSAA-------- +WP_190370564.1 ----------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG--TRV--DGGEFWQSAINAGAVAAIISPEAAL-------- +WP_190950786.1 ---P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG--TRV--DGGEFWPSAIASGAVAAIISPQAAQ-------- +WP_211627413.1 ---SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKGS--TV--DGHRFVGDVMRRGAAGVISEFEAPD-------- +QDZ19900.1 ---EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEGT--QN--DGHDFAAQAAENGAIAVVASKQVDL-E------ +KAA6418459.1 ---EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITKP--DE--DVWGCVHEALQRGASAVIAGDIFEAEE------ +PNH05610.1 ---ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPGL--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWS +OUS46025.1 ---EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVGG---A--AGASLAREAVAAGAVAIVASERVE--G------ + : .: . ::. . ** : + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase E-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLLRGMYNAMGLETGLVGT---- +KAG0583458.1 ------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLIRSMYEAMGSQVGLLGT---- +PTQ33238.1 ------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLIRSMYEAMGLTTGLLGT---- +GAQ90408.1 ------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIVRGIIEEMGQQTGLLGT---- +XP_001696935.2 GEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLVRGILEELGQTVGLMSS---- +XP_005851510.1 ------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAERCGMIGTI--- +XP_024517730.1 ------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGT---- +GJP33877.1 ------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLIKSIYDAMGVSAGLLGT---- +KAH7279093.1 ------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLVKSMFEAMEKKTGLISS---- +KAH9541295.1 A-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLLRSMYEAMGLQTGLLGT---- +XP_024364396.1 ------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGT---- +WP_194018526.1 -------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLIEYFLNQQQRASALLGT---- +XP_021969154.1 ------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLIKGMYEVMGLRTGMITN---- +OAP16898.1 ------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFST---- +MBF2019582.1 -------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLIEFFLNQSQLPTALLGT---- +WP_190370564.1 -------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLIEYFLNQASLFTALFGT---- +WP_190950786.1 -------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLNKANLATALMGT---- +WP_211627413.1 -----------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLCYALAEAEGIKPAMLTT---- +QDZ19900.1 -----------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLVRGILEEAGFITGMVGT---- +KAA6418459.1 -----------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLIRGMFDELDKSAGLIGT---- +PNH05610.1 GADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLIRGVLEELGQTVGLMSN---- +OUS46025.1 -----------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGLVGSNGNY + : : . *. : : * **:: : : . : .:. . + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase --INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSAC +KAG0583458.1 --INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTC +PTQ33238.1 --IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEAC +GAQ90408.1 --IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSAC +XP_001696935.2 --IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVA +XP_005851510.1 ---EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVA +XP_024517730.1 --ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVC +GJP33877.1 --ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEAC +KAH7279093.1 --IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGAC +KAH9541295.1 --INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDAC +XP_024364396.1 --INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDAC +WP_194018526.1 --LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYA +XP_021969154.1 --VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEAL +OAP16898.1 --VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESL +MBF2019582.1 --LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYA +WP_190370564.1 --LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFG +WP_190950786.1 --LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFG +WP_211627413.1 --VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFA +QDZ19900.1 --VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAV +KAA6418459.1 --VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAAC +PNH05610.1 --IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVA +OUS46025.1 VRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAA + . : + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase VMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNA +KAG0583458.1 IMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHA +PTQ33238.1 VMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNS +GAQ90408.1 VMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNA +XP_001696935.2 VVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAA +XP_005851510.1 LVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLG +XP_024517730.1 VMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNA +GJP33877.1 VMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHA +KAH7279093.1 VMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYA +KAH9541295.1 IMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNA +XP_024364396.1 IMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQS +WP_194018526.1 VMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYG +XP_021969154.1 VMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASA +OAP16898.1 VMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNA +MBF2019582.1 VMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYG +WP_190370564.1 VMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYG +WP_190950786.1 VMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYG +WP_211627413.1 AMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWG +QDZ19900.1 VMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVS +KAA6418459.1 VLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYA +PNH05610.1 VLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQA +OUS46025.1 VMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDA + :* . :. : : * *: . + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase DWFVARGNP-NVPVVTFGME--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAID +KAG0583458.1 SYFVEQGNP-DVPVVTFGME--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVE +PTQ33238.1 SYFVAQGNP-AVPVVTFGLE--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVE +GAQ90408.1 QWFISQGNP-DVPVITFALE--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIG +XP_001696935.2 EQLLERLGG-AVPVVTYGVV--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALK +XP_005851510.1 AELAQAAAAAGATVLTYSAD--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACG +XP_024517730.1 GYFVSLGNP-KVPVVTFGME--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVD +GJP33877.1 EFFMSRGGA-DVPTITFSLE--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAIN +KAH7279093.1 PFVIAQGSA-DVPVITFSMN--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAIN +KAH9541295.1 AYFINQGNP-DVPVVTFGIE--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVE +XP_024364396.1 DYFVTQGNQ-DVPVVTYAMG--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVD +WP_194018526.1 QKLIDRL-P-SAQVYTYSVT--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLG +XP_021969154.1 PLFIAQGNQ-DVPVVTFALE--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVE +OAP16898.1 AFFVQQGNP-NVPVVTFAME--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVG +MBF2019582.1 KRLIEAL-D-SDKVWSYSVS--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLG +WP_190370564.1 QRLIARL-N-KQQVWTYSVN--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFG +WP_190950786.1 ERLIASL-N-PEQVWSYSVN--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLG +WP_211627413.1 IRLADELRANGQKVMTFSQNL-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELG +QDZ19900.1 ASFIEVARRRGLKVLTFSANA-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMG +KAA6418459.1 DDM-KRFAA-AVPVVTYAIS--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSIN +PNH05610.1 AGFLKRLDG-VVPVVTYSLT--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALK +OUS46025.1 D-L-CREYASGVPVVTYSTQIGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAE + . . ::. **. : :. . *:*. : : : . : + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase APLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHTPDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMA +KAG0583458.1 APLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMA +PTQ33238.1 APLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMA +GAQ90408.1 APLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHTPDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMG +XP_001696935.2 APLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMG +XP_005851510.1 VPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------T +XP_024517730.1 APLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMA +GJP33877.1 APLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMA +KAH7279093.1 IPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHARTPDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMA +KAH9541295.1 APLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHSPDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMA +XP_024364396.1 APLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMA +WP_194018526.1 LDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMG +XP_021969154.1 APLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANTPDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMT +OAP16898.1 APLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMT +MBF2019582.1 LNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMG +WP_190370564.1 IDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHTPDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMG +WP_190950786.1 LDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHTPDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMG +WP_211627413.1 YGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHTDDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMG +QDZ19900.1 YPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHTPDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMG +KAA6418459.1 VPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANTPGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMG +PNH05610.1 APLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAARTPEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMG +OUS46025.1 ISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIG + : : *** * : *:** * : : :. : ::: *.*. * + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase KIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG-------------------------------- +KAG0583458.1 KIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED-------------------------------- +PTQ33238.1 KIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD-------------------------------- +GAQ90408.1 KIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND-------------------------------- +XP_001696935.2 AVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT-----P------------LWFE +XP_005851510.1 SMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV-----P------------HWFQ +XP_024517730.1 KIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS-------------------------------- +GJP33877.1 KIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG-------------------------------- +KAH7279093.1 KIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD-------------------------------- +KAH9541295.1 KIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD-------------------------------- +XP_024364396.1 KIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD-------------------------------- +WP_194018526.1 NIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW---------------------------------------- +XP_021969154.1 KIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD-------------------------------- +OAP16898.1 KIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD-------------------------------- +MBF2019582.1 KIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI---------------------------------------- +WP_190370564.1 KIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI---------------------------------------- +WP_190950786.1 KIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK---------------------------------------- +WP_211627413.1 RIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY---------------------------------------- +QDZ19900.1 KIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDPVYIPETTTRRWEKFKYIGNR +KAA6418459.1 EIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV-----S------------HTVR +PNH05610.1 AVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT-----P------------LWFE +OUS46025.1 KVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV-----H------------ENAQ + :* .: ..* :. . * :: :: *. + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase -FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVD +KAG0583458.1 -YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVD +PTQ33238.1 -YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMD +GAQ90408.1 -FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLD +XP_001696935.2 PYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLK +XP_005851510.1 KYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLP +XP_024517730.1 -YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVD +GJP33877.1 -FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVD +KAH7279093.1 -YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVD +KAH9541295.1 -YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVD +XP_024364396.1 -YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVD +WP_194018526.1 -------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY +XP_021969154.1 -YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVD +OAP16898.1 -YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVD +MBF2019582.1 -------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL +WP_190370564.1 -------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKM +WP_190950786.1 -------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL +WP_211627413.1 ------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRK +QDZ19900.1 SRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMV +KAA6418459.1 EFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLY +PNH05610.1 PYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLK +OUS46025.1 YECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIG + * *:: .: . * *:: *:* : ** . *: + +CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase ALHA-AGIDTSEFPWRFVNQ---------------------------- +KAG0583458.1 ALHA-AGVDTSEFPWRVPES---------------------------N +PTQ33238.1 ALHA-AGVDTSEFPWRVLES---------------------------T +GAQ90408.1 LLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM +XP_001696935.2 YLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD +XP_005851510.1 YLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R +XP_024517730.1 MLHA-SGIDTSEIPWKFPGHK--------------------------L +GJP33877.1 ELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y +KAH7279093.1 ALHA-AGIDTSEFPWRLPESH--------------------------- +KAH9541295.1 ALHA-AGVDTSEFPWRVPE----------------------------S +XP_024364396.1 DLHA-AGVDTSEFPWRVPES---------------------------N +WP_194018526.1 -S---------------------------------------------- +XP_021969154.1 ELHQ-SGIDTSEFPWRLPESY--------------------------- +OAP16898.1 ELHQ-AGIDTSEFPWRLPESH--------------------------- +MBF2019582.1 -G---------------------------------------------- +WP_190370564.1 LV---------------------------------------------- +WP_190950786.1 -G---------------------------------------------- +WP_211627413.1 D----------------------------------------K------ +QDZ19900.1 KIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------ +KAA6418459.1 RLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K +PNH05610.1 YLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E +OUS46025.1 AIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G + + + + diff --git a/runs/BEAST/xml_files/1e6_pap11align_name.xml b/runs/BEAST/xml_files/1e6_pap11align_name.xml new file mode 100644 index 0000000000000000000000000000000000000000..9ec20bc986306c28bf9e809a034059d160e9b012 --- /dev/null +++ b/runs/BEAST/xml_files/1e6_pap11align_name.xml @@ -0,0 +1,241 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7"> + + + <data +id="pap11_align_name" +spec="Alignment" +dataType="aminoacid" +name="alignment"> + + <sequence id="seq_CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase" spec="Sequence" taxon="CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase" totalcount="20" value="MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGTLRSSGATAGATAGG------------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAASKG----------------STERRPFDGLLNP------RCSACLLLGRR--TLAMSRKRR------------------GADRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVRDLVLVSSARQFAEGLMRNSR--GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAKEEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG---VGEGGGANG-AES-SATLRELLEEAG-V-Q---------------------------------------------P-------IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG--DKT--DGHLYVAEAVEKGAVAVVASKE----------EE-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLLRGMYNAMGLETGLVGT------INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSACVMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNADWFVARGNP-NVPVVTFGME--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAIDAPLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHTPDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMAKIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG---------------------------------FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVDALHA-AGIDTSEFPWRFVNQ----------------------------"/> + + <sequence id="seq_GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens" totalcount="20" value="------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP-------LGIARAT----------------------------------------------------------------------NAADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EEGDFDEFLEE-VD--------------------------EPE-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG----------------LVDVVKDD------------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED------------------------------DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQF--LDEVEE-ADY-TIALGELLENAG-V-K---------------------------------------------P-------ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG--LST--DGHLYAAEAVEKGASAVIASE------------------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIVRGIIEEMGQQTGLLGT------IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSACVMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNAQWFISQGNP-DVPVITFALE--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIGAPLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHTPDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMGKIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND---------------------------------FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLDLLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM"/> + + <sequence id="seq_GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68" spec="Sequence" taxon="GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68" totalcount="20" value="MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPAMRRHAPQATSQR-------------------------------------------------------AKPRGARRRVACQAGS----------------GRGEGSGSEFPNP------AELPPKAAEEE--A--------------------------RRDGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA-------------A--VAEEEAEGEADG----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE------VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA---M--AEAGEEGGAG-ALTVAEILEDAG-V-E---------------------------------------------P-------LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG--QQT--DGHMYVGDAAERGAAAVVLSRG-----------------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLIKSIYDAMGVSAGLLGT------ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEACVMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHAEFFMSRGGA-DVPTITFSLE--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAINAPLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMAKIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG---------------------------------FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVDELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y"/> + + <sequence id="seq_KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2" spec="Sequence" taxon="KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2" totalcount="20" value="MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR---------------------------------------------------------------------------------------CTRSHAVE----------------------------QSDAAL------DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLDAI--IS--------------------------------------------------------------------------QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------------------------------------------EPQDDEE--------------------------------DP---D--ASYPER-PSR-SYTLASLLKLAD-I-S--------------------------------------------LP-------EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITKP--DE--DVWGCVHEALQRGASAVIAGDIFEAEE-----------------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLIRGMFDELDKSAGLIGT------VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAACVLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYADDM-KRFAA-AVPVVTYAIS--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSINVPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANTPGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMGEIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV-----S------------HTVREFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLYRLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K"/> + + <sequence id="seq_KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus" spec="Sequence" taxon="KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus" totalcount="20" value="MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---GVGSSGG-VSVGP----------------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQARRR----------------DEDTEEFDDYIDP------AKAEPMEAMDP--D--------------------------EEEMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVDIEGEEEDV------------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPRVIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG------EEPLVE-PTY-RMTLGELLDEAR-V-T---------------------------------------------P-------IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG--LKS--DGHEFANQAIEKGAIAVISCT------------------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLIRSMYEAMGSQVGLLGT------INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTCIMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHASYFVEQGNP-DVPVVTFGME--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVEAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMAKIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED---------------------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVDALHA-AGVDTSEFPWRVPES---------------------------N"/> + + <sequence id="seq_KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii" spec="Sequence" taxon="KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii" totalcount="20" value="MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------FRSSFYQVSFKD-------------------------------LSS--------------------------------QQFFR----------------ACFAMSSKEIPNP------SEADPPEVEDFDEE--------------------------APDVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD-------------P--NGEDEDEDEDKIEGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK--------EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE---D--LEQIKE-PKF-SMTLSELLDEAR-V-V---------------------------------------------P-------IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIGTPSSS--TENPPLTEAIEKGAVVVVASME----------V------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLVKSMFEAMEKKTGLISS------IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGACVMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYAPFVIAQGSA-DVPVITFSMN--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAINIPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHARTPDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMAKIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD---------------------------------YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVDALHA-AGIDTSEFPWRLPESH---------------------------"/> + + <sequence id="seq_KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum" spec="Sequence" taxon="KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum" totalcount="20" value="MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRGRRSPSSLQSVSFSPASIACCKDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRAKQP----------------RRQRSEFDDYIDP------AKAEPFEAEDE--E--------------------------DEEMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA-------------A--DAEEEEEEEEEE--EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSLRLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE------DEEMSE-PHY-RMTLGELLDEAR-V-T---------------------------------------------P-------IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG--LSL--DGHDFATQAVERGAVAIVASGE----------IA-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLLRSMYEAMGLQTGLLGT------INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDACIMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNAAYFINQGNP-DVPVVTFGIE--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVEAPLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHSPDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMAKIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD---------------------------------YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVDALHA-AGVDTSEFPWRVPE----------------------------S"/> + + <sequence id="seq_MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068" spec="Sequence" taxon="MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRDLLAKVSGISQ---------------------------------------------I-------P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG--TRV--DGGEFWQSALEAGAIAALISPQSAA---------------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLIEFFLNQSQLPTALLGT------LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYAVMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYGKRLIEAL-D-SDKVWSYSVS--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLGLNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMGKIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI-----------------------------------------------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL-G----------------------------------------------"/> + + <sequence id="seq_OAP16898.1_PDE316_Arabidopsis_thaliana" spec="Sequence" taxon="OAP16898.1_PDE316_Arabidopsis_thaliana" totalcount="20" value="MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------VLLPFSRNSR---------------------------------------------------------------------TLTV----------------AAGPARRNSYPNP------ADDDPPEAPED--S--------------------------MHGVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV-------------E--DAAETGR------------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGNEEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE---S--KARIVE-PKF-KMSLAELLDESK-V-V---------------------------------------------P-------IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG--SEN------FLSEADKRGAVAVVASKE----------I------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFST------VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNAAFFVQQGNP-NVPVVTFAME--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD---------------------------------YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVDELHQ-AGIDTSEFPWRLPESH---------------------------"/> + + <sequence id="seq_OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri" spec="Sequence" taxon="OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri" totalcount="20" value="MGAGR---------------------------------------------------RRGGGS-----------------------------------------------------------------------------------------------TRRA-------------------------------GRT-VG------------------------------ARW-----------------------------------------------------------------------------------------------------TREG------DGVDHGRAG----ARLEVVRA--------------S--------------------------------------------------------------------------------------------------A---A--NA--DA-EVDAEALLREIFADAE-V-D---------------------------------------------A-------EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVGG---A--AGASLAREAVAAGAVAIVASERVE--G-----------------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDAD-L-CREYASGVPVVTYSTQIGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV-----H------------ENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIGAIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G"/> + + <sequence id="seq_PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis" spec="Sequence" taxon="PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis" totalcount="20" value="MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL---------------------------------------------------------------------------------------ASVGLACPAPH----------------VESGRKLSVVAKARRGRPPAQPEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELDPMSRRLV-------------------------------------------------------------------------EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------------------------------------------AADGDAG--------------------------------EP---S--TSYPEP-PDR-EFRASDLFGEAG-L-M--------------------------------------------DA-------ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPGL--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWSGADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLIRGVLEELGQTVGLMSN------IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVAVLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQAAGFLKRLDG-VVPVVTYSLT--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALKAPLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAARTPEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMGAVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT-----P------------LWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLKYLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E"/> + + <sequence id="seq_PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha" spec="Sequence" taxon="PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha" totalcount="20" value="MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSRKIVRRQFVRSEQ-----------------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRAVPK------------------NAKEFDDYIDP------ANAEPLEVED---D--------------------------EEGISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID-------------P--EDYKSAQDLQEEEEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGKVVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL---L--DDEFKP-PVY-KMTLAELLDEAK-V-T---------------------------------------------P-------LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG--HSS--DGHLYSSEAVERGASVLVVSK------------------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLIRSMYEAMGLTTGLLGT------IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEACVMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNSSYFVAQGNP-AVPVVTFGLE--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVEAPLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMAKIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD---------------------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMDALHA-AGVDTSEFPWRVLES---------------------------T"/> + + <sequence id="seq_QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus" spec="Sequence" taxon="QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus" totalcount="20" value="MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR----------------------------------------------------------------------------------------------V-------------------------------PA-----------------------------------------SSSPRRGRTT----SGSR--------------------------------------------------------------------------------LRGG------FPVRR------------VLEG--------------T--R--------------------------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ------PAGAVV-PRV-S------VALSD-I-L--------------------------------------------P--------EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEGT--QN--DGHDFAAQAAENGAIAVVASKQVDL-E-----------------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLVRGILEEAGFITGMVGT------VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAVVMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVSASFIEVARRRGLKVLTFSANA-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMGYPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHTPDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMGKIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDPVYIPETTTRRWEKFKYIGNRSRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMVKIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------"/> + + <sequence id="seq_WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237" spec="Sequence" taxon="WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKIRELLAVINHLEY---------------------------------------------S--------------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG--TRV--DGGEFWQSAINAGAVAAIISPEAAL---------------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLIEYFLNQASLFTALFGT------LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFGVMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYGQRLIARL-N-KQQVWTYSVN--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFGIDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHTPDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMGKIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI-----------------------------------------------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKMLV----------------------------------------------"/> + + <sequence id="seq_WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme" spec="Sequence" taxon="WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRELLTAVDSVEQ---------------------------------------------L-------P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG--TRV--DGGEFWPSAIASGAVAAIISPQAAQ---------------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLNKANLATALMGT------LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFGVMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYGERLIASL-N-PEQVWSYSVN--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHTPDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMGKIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK-----------------------------------------------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL-G----------------------------------------------"/> + + <sequence id="seq_WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina" spec="Sequence" taxon="WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLGQLLASVPEVVT---------------------------------------------AAPWLAQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG--TRV--DGGEFWSGALGAGAIAAVVSEKALQ---------------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLIEYFLNQQQRASALLGT------LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYGQKLIDRL-P-SAQVYTYSVT--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLGLDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW-----------------------------------------------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY-S----------------------------------------------"/> + + <sequence id="seq_WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M" spec="Sequence" taxon="WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M" totalcount="20" value="----------------------------------------------------M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-GIP-L------TILAE-K-L--------------------------------------------NA-------SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKGS--TV--DGHRFVGDVMRRGAAGVISEFEAPD-------------------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLCYALAEAEGIKPAMLTT------VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFAAMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWGIRLADELRANGQKVMTFSQNL-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELGYGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHTDDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMGRIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY----------------------------------------------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRKD----------------------------------------K------"/> + + <sequence id="seq_XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii" totalcount="20" value="MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP---------------------------------------------------------------------------------------ANKCHAPRIAP----------------VAPAPARQTLCAARRGRPPGGP----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLDPHTRRLMGI--------------------------------------------------------------------AEQREDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------------------------------------------AADEDVG--------------------------------EP---S--TSYPEP-PDR-AFRAPDLFGEAA-L-F--------------------------------------------EA-------ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEGL--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHVGEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLVRGILEELGQTVGLMSS------IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVAVVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAAEQLLERLGG-AVPVVTYGVV--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT-----P------------LWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLKYLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD"/> + + <sequence id="seq_XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis" spec="Sequence" taxon="XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis" totalcount="20" value="MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR---------------------------------------------------------------------------------------DELLRIKE----------------------------DL-------------------------------------DVGLNTDEDEELAGITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS-------------------SDDDEEEEEEEEEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S--------IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP---Q--ARFPEP-PAR-SYRLAELLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST-------AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPSA--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAERCGMIGTI------EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSAD--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV-----P------------HWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLPYLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R"/> + + <sequence id="seq_XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus" spec="Sequence" taxon="XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus" totalcount="20" value="-MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------RLPPFFHRT----------------------------------------------------------------------NLTL----------------FAINRDGKHYPNP------ADIDPPEAPED--T--------------------------VHGVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV-------------E--DAPDESAST----------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD-------EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK---G--EVRIVE-PKC-KMTLAELLDESK-V-V---------------------------------------------P-------VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG--KKT--DGHLFLTEADKRGAVAVVASKE----------I------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLIKGMYEVMGLRTGMITN------VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEALVMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASAPLFIAQGNQ-DVPVVTFALE--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVEAPLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANTPDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMTKIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD---------------------------------YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVDELHQ-SGIDTSEFPWRLPESY---------------------------"/> + + <sequence id="seq_XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFGRGVQRWRLSVAA----------------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRTRRR----------------NDDTKEFDDYINP------AKAEPMEAMDA--E--------------------------DEDMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVGEEEEEEEDE--EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE------GEAMME-PTY-RMTLAELLDEAR-V-T---------------------------------------------P-------VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG--LKS--DGYEFAHQAIEKGAVAIVSSS------------------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGT------INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQSDYFVTQGNQ-DVPVVTYAMG--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMAKIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD---------------------------------YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVDDLHA-AGVDTSEFPWRVPES---------------------------N"/> + + <sequence id="seq_XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="-----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------ARVCSDRSVAVCAT---------------------RSRG----------------------------------------RKPRR----------------GGDGEGEHRYADS------AGNDPPEAEGP--E--------------------------E----AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG-----------------------------------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES------------DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL---Q--ESVIKE-PRF-KMTLTELLDEAK-V-V---------------------------------------------P-------LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG--ETS--DGHSFVPQAAEQGAVVIVATK------------------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGT------ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNAGYFVSLGNP-KVPVVTFGME--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMAKIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS---------------------------------YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVDMLHA-SGIDTSEIPWKFPGHK--------------------------L"/> + + </data> + + + + + + + + + + + + + + + + + <map name="Uniform" >beast.base.inference.distribution.Uniform</map> + + + + <map name="Exponential" >beast.base.inference.distribution.Exponential</map> + + + + <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map> + + + + <map name="Normal" >beast.base.inference.distribution.Normal</map> + + + + <map name="Beta" >beast.base.inference.distribution.Beta</map> + + + + <map name="Gamma" >beast.base.inference.distribution.Gamma</map> + + + + <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map> + + + + <map name="prior" >beast.base.inference.distribution.Prior</map> + + + + <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map> + + + + <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map> + + + + <run id="mcmc" spec="MCMC" chainLength="1000000" storeEvery="1000"> + + <state id="state" spec="State" storeEvery="5000"> + + <tree id="Tree.t:pap11_align_name" spec="beast.base.evolution.tree.Tree" name="stateNode"> + + <taxonset id="TaxonSet.pap11_align_name" spec="TaxonSet"> + + <alignment idref="pap11_align_name"/> + + </taxonset> + + </tree> + + <parameter id="birthRate.t:pap11_align_name" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter> + + </state> + + <init id="RandomTree.t:pap11_align_name" spec="RandomTree" estimate="false" initial="@Tree.t:pap11_align_name" taxa="@pap11_align_name"> + + <populationModel id="ConstantPopulation0.t:pap11_align_name" spec="ConstantPopulation"> + + <parameter id="randomPopSize.t:pap11_align_name" spec="parameter.RealParameter" name="popSize">1.0</parameter> + + </populationModel> + + </init> + + <distribution id="posterior" spec="CompoundDistribution"> + + <distribution id="prior" spec="CompoundDistribution"> + + <distribution id="YuleModel.t:pap11_align_name" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:pap11_align_name" tree="@Tree.t:pap11_align_name"/> + + <prior id="YuleBirthRatePrior.t:pap11_align_name" name="distribution" x="@birthRate.t:pap11_align_name"> + + <Uniform id="Uniform.1" name="distr" upper="Infinity"/> + + </prior> + + </distribution> + + <distribution id="likelihood" spec="CompoundDistribution" useThreads="true"> + + <distribution id="treeLikelihood.pap11_align_name" spec="ThreadedTreeLikelihood" data="@pap11_align_name" tree="@Tree.t:pap11_align_name"> + + <siteModel id="SiteModel.s:pap11_align_name" spec="SiteModel"> + + <parameter id="mutationRate.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter> + + <parameter id="gammaShape.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter> + + <parameter id="proportionInvariant.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> + + <substModel id="Blosum62.s:pap11_align_name" spec="Blosum62"/> + + </siteModel> + + <branchRateModel id="StrictClock.c:pap11_align_name" spec="beast.base.evolution.branchratemodel.StrictClockModel"> + + <parameter id="clockRate.c:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter> + + </branchRateModel> + + </distribution> + + </distribution> + + </distribution> + + <operator id="YuleBirthRateScaler.t:pap11_align_name" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:pap11_align_name" upper="10.0" weight="3.0"/> + + <operator id="YuleModelTreeRootScaler.t:pap11_align_name" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:pap11_align_name" upper="10.0" weight="3.0"/> + + <operator id="YuleModelUniformOperator.t:pap11_align_name" spec="kernel.BactrianNodeOperator" tree="@Tree.t:pap11_align_name" weight="30.0"/> + + <operator id="YuleModelSubtreeSlide.t:pap11_align_name" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:pap11_align_name" weight="15.0"/> + + <operator id="YuleModelNarrow.t:pap11_align_name" spec="Exchange" tree="@Tree.t:pap11_align_name" weight="15.0"/> + + <operator id="YuleModelWide.t:pap11_align_name" spec="Exchange" isNarrow="false" tree="@Tree.t:pap11_align_name" weight="3.0"/> + + <operator id="YuleModelWilsonBalding.t:pap11_align_name" spec="WilsonBalding" tree="@Tree.t:pap11_align_name" weight="3.0"/> + + <operator id="YuleModelBICEPSEpochTop.t:pap11_align_name" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:pap11_align_name" weight="2.0"/> + + <operator id="YuleModelBICEPSEpochAll.t:pap11_align_name" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:pap11_align_name" weight="2.0"/> + + <operator id="YuleModelBICEPSTreeFlex.t:pap11_align_name" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:pap11_align_name" weight="2.0"/> + + <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + <log idref="treeLikelihood.pap11_align_name"/> + + <log id="TreeHeight.t:pap11_align_name" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:pap11_align_name"/> + + <log idref="YuleModel.t:pap11_align_name"/> + + <log idref="birthRate.t:pap11_align_name"/> + + </logger> + + <logger id="screenlog" spec="Logger" logEvery="1000"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + </logger> + + <logger id="treelog.t:pap11_align_name" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree"> + + <log id="TreeWithMetaDataLogger.t:pap11_align_name" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:pap11_align_name"/> + + </logger> + + <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/> + + </run> + + + +</beast> diff --git a/runs/BEAST/xml_files/g31563_g41182_1mil.xml b/runs/BEAST/xml_files/g31563_g41182_1mil.xml new file mode 100644 index 0000000000000000000000000000000000000000..a4e76587180cfe106716364658d15850d67f6399 --- /dev/null +++ b/runs/BEAST/xml_files/g31563_g41182_1mil.xml @@ -0,0 +1,373 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7"> + + + <data +id="g31563_select" +spec="Alignment" +dataType="aminoacid" +name="alignment"> + + <sequence id="seq_4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii" spec="Sequence" taxon="4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii" totalcount="20" value="---MGS---S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HH------------------------------------------------------------------HHHHS----------------------S---G-----------LVPRG-----------S-----------------HMVELE---------------A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA------------------------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPYGEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLVIYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQGAPARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPLADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------IYANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW---EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR-----------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG----------------------------------------------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARRQMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K--------------------------------------------------------------------------------------"/> + + <sequence id="seq_AAP85534.1_isoamylase_Chlamydomonas_reinhardtii" spec="Sequence" taxon="AAP85534.1_isoamylase_Chlamydomonas_reinhardtii" totalcount="20" value="MLLQAP---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LAPG------------------------------------------------------------SARRQAACSVAR----------EATNVRIVTAPALTPGRAGVSGRRILPPSR-----------V-----------------VSVELE---------------A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA------------------------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPYGEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLVIYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQGAPARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPLADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------IYANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW---EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR-----------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG----------------------------------------------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARRQMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K--------------------------------------------------------------------------------------"/> + + <sequence id="seq_AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii" spec="Sequence" taxon="AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii" totalcount="20" value="---MLG---GLPSPSRPRVVSGGLAVSSGAANSD-----------------CRPVERGPSPSTEGKETRGQREDTDDEEAVALAC---HKGSLFSQEERGLSLPLSPVEEESGGDSGS-----EFKREEVSPSLHREPGERVAPGKEEREEEHGDPSAEV----------------------------------------PSSAEHKMPSTVFQSKGGLPGFFAALLGGKEADGAAGPP----------------------------------------------------------PRPPEAPVSPF--R----------PQGDGETESHESAVSAGPSASSSSSSLSSSS-----------FSSSSCTALKTRG----------------------S--------------------------------SEEE---GWE--TRVEARGVRTRNEAQEGGPQ-SVSHGLERSEENALEA----RETQELEETESR----QLLRDHGGKMGA-C---VLRD-SD---------------------------EDLCLFRLW-GPHVDRCWVQLN----P-----------TK-----------------------AG-ES-----------------------PRRFELK---------------NEGNALWGTVLRG-VP-------------S--R-HFRCP-L------------SI--P--SLG--YS-G---DPYAR------------------------------HT-DF---F--------------SNTCYV-TDASRFPWKHLQ---------------SFDP-----------------------------------------------------------P--TWNKLIIYELHPGTFSPAS-----------ADRTVFETLVD-KLDHIRSLNFNAVEFLPVQEFGG----------------EW--GYNPRLLLATHGKY----GTP-------DQLRKLVDECHRKGLAVIFDLVLNHGSAKL--NS-LW--NW-DGYGKDAS-----GGIYFEG----------GGE-------SG-------------W-G---RKFSFHKREVRDMILAAALCFIEEYGADGLRLDSVHSMPWDL--------------------------------------------------------LQELT------HAVRSKHPSKIL-IAEV--------------T---PENPQICN-----SAGFDSCWIHSAYYDA-I-KVTRGQDGNHH-------------------------------LDMLRAMIDVH---RGFRMSH--QGVNSLLGSHDQAGNKQGGHTDGR-----------AG---RYFVDLF-GGRNNWHSRAQCRMW-YSLQAVCRGLPMMFMGTETHQDKWWNVDEQH--------------K-----MNWNFVENHDPL--AEQMMNLVAAANKLRLSFPSLTDDHAPVRFCHL----------------------DYQNRV-------------LGFVRGS-------------------------------------LLVVLNCS-ESQWEGRDYEVQ--------------------TDC--VNR-KFKQVFNSQAA----EFGGWEASWSSADRN------------LSSSVH----------ARLPVNLPKWSVTVYE-RQE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_ACY56095.1_isoamylase_Oryza_sativa_Indica_Group" spec="Sequence" taxon="ACY56095.1_isoamylase_Oryza_sativa_Indica_Group" totalcount="20" value="---MAS---L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHCL----------------------------------------------------------SARPLVVAAAPG------------RPGPGPGPWLRGGARRRNAAFSAGNAGRRV-----------G------------------LRRSV---------------A-----------------------------------SAVE--VGVGEDEE-GVEEEEEEVEA---------------------VVMPERYALGG-----ACRVLAG----MPAPLGATALDG------------------------------GVNFAVY-SAGASAASLCLF----TPDDLEA------------------------------------------------------------------DEVTEEVPLDPLFNRTGNVWH-VFIEG-EL-------------HN-ML--YGY-RFDGMFAP-----HC----GQYF--DVSNVVVDPYAKA------------------------------V-ISRGEYG------V-----PGPG------------GDCW-------------------------------PQMAGM-IP----------LP-YST-----FDW---QGD--LPL--RY--PQKDLVIYEMHLRGFTKHSSSNV-------EHPGTYIGAIS-KLDYLKELGVNCVELMPCHEFNELEYFSCS-----SKMNFW--GYSTINFFSPMIRYSSG-GIRNCGRDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGN--EKGP-ILSF-R---GIDN-----STYYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWD-----------------PVNVYGS--PVEGDM-----TTTGTPLATPPLID-MISNDPILGDVKLIAEAW-DAGG-LYQVGQFPHWK-IWSEWNG---KYRDIVRQFIKGTD-----GF-AGGFAECLCGSPH----------LYQA------------------GGRKPWH----SINFVCAHDG-----FTLADLVTYNKKYNSSNGEDN----RDGENHNLSWNCGE---EG--EFAGL---SVKRLRKRQMRNF-FVSLMVSQGVPMFYMGDEYGHTKGGNNNTYCHDH-----------YVN--YFRWDKK-E--E---SSDLQRFCSLMTKFRK-----------------------QCESLGLADFPTAQRLHWHGHQPGKPDWS-ETSRFVAFSTKDE----------------------------------------------------------TKGEIYVAFNASHLPAVVGLPER-P-GYRWEPLVDTGKPAPYD---FLT--------DD----------LPDRAH--AVHLFSHFLNSNLYPMLSYSSIILELQPD---------------------------------------------------------------------------------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGYFAPTLRY----GSP-------DDLKYFIDRCHAANIGVILDWVPGTFPKDD--WALAR--FF-DG----TA-----LY-EHADPRL-------GEH-------MD-------------WGT---YIFYYGRNEVRSFLLSNAYYWLREFHIDGLRVDAVASMLYLDY-SR-------------------KDGE-WL-----P-----NAYGGRENLDVIEF-LKQLN------VMVGERFPGVLT-IAEE--------------S---TAWPAVSRPVYAGGL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_CBr_g31563_1_4-alpha-glucan-branching_protein" spec="Sequence" taxon="CBr_g31563_1_4-alpha-glucan-branching_protein" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYSQLC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPGLG-----------------------------AILDGQGG----------------------------------------------CVFRVW-APNAEAAFIALH----D------------E-----------------------AS-SV-----------------DGQEGTVKMIAME---------------KQGAFW-AQRVRN-VR-------------AG-D-KYHYVFR------------HQ--G--VDY--HR-R---DARAR------------------------------HT-DF---N--------------SDACII-TDPT----YEWY---------------PFQT--------------------------------------------------------------PAFEEMIIYQLHVGAFTGR-----------DGAGSFMEAEG-KLDHIKGMGFNTIQLMPVHEFSG----------------EW--GYNPRLLCAIHQKY----GTP-------EQLRHFVNECHIRGIAVIFEVVLNHMATNL--NS-LW--AY-DGLNTEDD-----GGLYFDR----------AFD-------TG-------------S-S---RGFAYEEREVREMISDAVRMFLSEYKADGLRIHAVHNTPREV--------------------------------------------------------LEDMT------STMHEEFPGKIL-ISDV--------------T---PENPKIVS-----RTGFDSTVIHSTYFDM-R-KHMRGD---LD-------------------------------GRKLEKAIGLH---YGFTKPT--QCIKHFLGAHDHIGDRNDGMFDAA-----------IDGFHRYAVDLF-GGRAKWEANAAARAW-YMVMTMSAGIPLLFMGTEFSQDGWWGVQPDE--------------C-----VNWEKAE--DDT--GKTMMKLVKAANEFRRESPAVLH--GTVDVVHY----------------------DENHGI-------------IGFWRKSE---------------------------------KEWLFVVANLS-SYQWSEEEYEVR--------------------VGNCGTGH-KFIEVFNSQDA----QYGGWEGSGNAGKKL------------KG--NG----------RRISINLPQWSVLIFE-PTD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii" totalcount="20" value="---MAW---SV--------------------TQA-------------------------------------------------------------------------------------------------------------PAGRASCICPRGIGGSG----------------------------------------GIGAAASSSQALRSS-ARRRKRVALCCGSPLLGRALSLS----------------------------------------------------------CHVHGKHYSRP--S----------TRVSCADPVSPAESTAASTATASKDLLEP-S-----------KADHSMEEQTMEIA-KQIQAFRDGSLKLKEQD-----------------------------------AALPKVVPPPG--DGQRIYEIDPYLKNYRDHLE---------------------YRYSQYKAKVD-----AINKHEG----GLEAFSRGYE-KFGF---------------------NRTAA-GITYREW-APAAKSASLMGD---------------FNN-----------------------WN-P------------------------NADMMKK---------------NEYGVWE-LFLPNNADGS-----------AA-IP--HGS-RVKIH--M-----ET--A--SGV-KDA-I---PAWIK------------------------------FAVQA-------------------------------------PGE-------I-PYN------------------GI-Y-Y----------DPPPEER-----YEF---K----HPR--PK--RPNSLRVYEAHVGMSSTEP------------KVNSYSAFRDDVLPRIKGLGYNAVQLMAVMEHAYYG--------------SF--GYHITNFFAVSSRC----GTP-------DELKSLIDKAHELGLFVLMDVVHSHCSNNV--LDGLN--MF-DG----TD-----SQYFHSGAR--------GYH-------WM-------------WDS---RLFDYSSWEVLRFLLSNLRWWMEEYKFDGFRFDGITSMMYTHHGLQ------------------MTFTG-QY-----S-----EYFGMTTDVDAVVY-LMLAN------DLLHALYPQTIT-VAED--------------V---SGMPTLCIPVADGGIGFD-YRLQMAIADKWI-DILE---------KLK---------------------DEEWN----MGNIVFT---L-TNRRWMEKCISYAESHDQALVGDKT--LAFW-----LMDKDM---YDHMALDRPSTPRIDRGIALHKMIR-LITMALGGEGYLNFMGNEFGHPEWIDFPRSDQKLPNGKFVPGNKNSFDKCRRRFDLGDA--DYLRYRGLQEFDRAMQQLEAKYEFMVA--PHEYVSRK----------------------NEGDKI-------------IVFEKGD-------------------------------------LVFVFNFH--WQKSYTDYRV----------------------GCLK-PG-NYKVVLDTDER----LFGGFGRLDHSAVFHTN--------EGWYDDRP----------QSFQVYSPCRTAVVYA-PGLSQRVAMADSSWDDAALITAFNSAVGKYQERHSSKESDGKSSHQE-KIESASQQDQAAAEGSSQHADSSFVDPSSYYPYPYPQPHPSYPYPAFVYPVPAYACAPPPSHCCHHSCCHSSSTQSSRSDDPSFETLKLAILQSLSQLPPDKQLSLEDNAEVLIAWFNAGFRTARSPSRVVPISLFLIYWAERWLDQGFLPRTSESKKEAFRKYLEASGVLDSLTKVLVALYEENDKPPLAIDFIQHNLGGYTNEEYTKLKGERDELQLKYNELVAAHEELGRKFEE-LQLQLPPP-E---EAPPVEGAPP-A"/> + + <sequence id="seq_GAQ78433.1_alpha-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ78433.1_alpha-amylase_Klebsormidium_nitens" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGVESSPGGAEDG----QSGHKEVER-GE--------------------------------G-----------LTKHP----P----SPD---K---PKVQLTHE-----------------------------------------------------------------KPSVED-SVAAK-IV-------------EQG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEILIQGFNWES----------HH-RNWYQTLLE-KVPELKAAGFTGIWLPPASDSLA----------------PQ--GYLPKDLYCLNSAY----GSS-------DQLRHLLRTLKAAGIRPIADIVINHRIGSAQGNGGQW-NRY-E---------GMRMAWDETAVTSD--SYGGLGNPGTG--E--------TF-----EGA---PNIDHSQEHVQQDITEWLRWLKDDVGFSGFRFDYAKGYSPDF-V-K-------------------KYIE-AVR-PDFA----VGEYW-----D--ACSY--------------GPEPESVL-EANQ--------------E---EHRQRIVDWIDGTG-----G-LASAFDFTTKGVLQ----------EAVS-------------------KSEYWR----LKDDQGRPPGV-I-GLWPARAVSFVENHDTGSTQN---------------------------HWPF-------P-KDEVLQG-YAYILTHPGVPTVFYDHYFEWGGE--------------------------------------------MKAALSRLIQIRRQQHITSQ--STVHILE-------------------------AA-S------------VYVAEVDD-------------------------------------CTL-MKLG-KEDWAPPD-------------------------NQ------KWC-WVHSGR--NYS---IWT------------------------------------------------------REKKPP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_GAQ80182.1_isoamylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ80182.1_isoamylase_Klebsormidium_nitens" totalcount="20" value="---MQ------------------------------------------------------------------------------------------------------------------------------------RQCTGRDTASARSKSSPAVHALKKDGNT------------------------------------------FVYHINGGGRVLASVRKE-ARRFMVTLEVNTK----------------------------------------------------------ELEIDSATPLHL------------HWGLSRSDSEDWVLLDAKSAPPNTT-LSGG-----------ETEAMRTPILESRPGVRRIEIALD---------------A-----------------------------------RKAP--VELHFVLYQPPTEKVPE-KW---------------------FRSTKESNFSV-----PVGLGRG----SPDPLGATWQSN----------------------------G-SVNFALY-SRNAEGVILCLF----KPGAVEP---------------------------------------------------------------------STELDLSPGLHRTGDVWH-AQLES-VE-------------GY-DR--YGY-RVRGAVGW-----AT----GNRF--HSRPVLLDPYAHF------------------------------I-APH----------V-----PGQE------------DLPS-------------------------------PALALG-LL----------QP-EEP-----FDW---EGD--YPP--LV--PMEELIAYKLHVGGFTRDASSGV-----ADAARGTFLGVVE-KVQHLVDMGVNAVILQPIAAFDETL---------------G--SFFPISFFAPASIYGPG----GSGVAASRSLKLLVKELHRAGIEVLLDVVYSHTAEGN--DEDPKTVSL-R---GIDN-----ATYYLVDEF--------GQF-KI---P--------EF-----GVG---NAFNCNHPTVQRMIVDSIRRWVEEFHVDGFCFANAGALVTG-------------------------------------------PHGQQLSRPLLVE-ALAFDPVLADIKLIADLRSPITG-VHQPVDFPHWS-RWAEWNS---RYRDDVRRFIRGEG-----GQ-LSSFATRLVGSGD----------IFDD-------------------RRGPGF----SFNHVTSPYG-----YTLADVVSYTGYPNDF-----------RCQNEFGWNAGV---EG--QVADP---GVTDARQRQMRTY-LVALFLSQGVPVLTMGDEYGHTKNGNLDVE---D-----------RNS--VFHWGQMEG--PL--GSQLKELIARLVAFREE----------------------HPELLQRREYLLPHELVWHGYWPAHPEWDNPSSAFLAASLHQYVPVEEPEPDSEYEPEPELEAPERAPFSVPGVSLEAP-SGAGEDL-PEAVDPLAGLEPVGHGDLYIAFNAHGDQVTLGLPAP-PRGAVWHRLADTSMPVQSY---FVG--------EG----------EALHAP--PPGAPDVVHPHGSYDLAPFSALLLEAKFPKGADGV-RR------------------------------------------------------------------------------------------------------------P------------S-------------YEMQT----------------------------------------------------------NKAAPFAVSLSGF----------------------------------------------------------------------------------------"/> + + <sequence id="seq_GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIPLGP------------------------------------------------------------------------------------------------------SWLGLLTKVEGSE-----------YDGKLVTVVP-------------------------------------------------------------K---AVA--TGVDVIDRTSAAALTDEQIL-DSTPGLG-----------------------------AILDAEGG----------------------------------------------CVFRVW-APEAQYAELVVL----G-----------PN-----------------------TP-DD-----------------------DNVLGMR---------------WEGGNF-AVRAPG-VR-------------AG-A-KYYFIFH------------HN--G--EKF--YR-R---DARAR------------------------------YT-DF---D--------------GCACYV-VDPS----YDWA---------------PFEA-----------------------------------------------------------P--TWDKLILYQVHVGAFTGRE-----------EGGGTFNALAA-KVDYIKSLGFNAIQLMPVTEFGG----------------LW--GYNPRLLTSTHQAF----GTP-------AELQSLVDTCHKAGIAVIFDVVLNHGAARL--NS-LW--AY-DGWNPNNG-----GGIYHHG----------AGK-------TP-------------W-G---KKFAFGRWEVDDYILEGAEIFLRDFNGDGLRFDSVHNMPWQL--------------------------------------------------------LQRMT------WTLHDKYPGKIL-ISEI--------------T---PEDSAAVS-----SAGFDATWIHSTFFET-R-KYMEGD---RA-------------------------------LGKVQHVLGLG---SGFSKPT--QMLKYVMGCHDQIGCRNNGAFCHD-----------IGGLHRYPVDHY-GGRNKWGARAIARMW-YAAMIAASGIPMAFMGTECHHDGWWHVEQNR--------------C-----FNWWFAG--DPL--GQEMMRLVTSANTLRTQSHALGA--GGFDTVHF----------------------DDHHKV-------------LGFRRESN---------------------------------DQTLLVIVNAG-GNQWENSDYGVG--------------------VGDRGIGR-RYVERFNSQDA----SFGGWEGSGNAGRDL------------HE--HG----------GRIYINVPKWSTLIFE-VL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group" totalcount="20" value="---M----------------------------------------------------------------------------A---VAS-------------------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPGSVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLSG--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP---------------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDTDIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGSGFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW-----D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------SALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-------P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKIHCR--SK---------------------------------------------------------------------------------------------------------------------------------------------------------------VWE------------------------------------------------------VSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii" spec="Sequence" taxon="KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii" totalcount="20" value="---MEL---H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVSY----------------------------------------------------------PGAYRNNTACLG------------LPPFGSH--LVPSPKACLQQQEVMR----------------------------------RCKRRV---------------S-----------------------------------VCRS--SY---------VDVSVSEN------------------------EVKAADDTL-----FGAPSHG----SPLPFGATMVGD------------------------------GVNFSIH-SSSATSVTLCLF----TSSDLQQ------------------------------------------------------------------GQVTREIPLDPRLNRTGDVWH-ICLPN-IS-------------EE-LL--YGY-RMDGPFFP-----ES----GQRF--NPACILVDPYAKA------------------------------V-ISREVYG------V-----PASN------------GNCW-------------------------------PQMGGM-VP----------FN-AEP-----FDW---EGD--ISP--RL--SQKDLIVYEMHVRGFTRHESSNV-------NYPGTYHGLVE-KLDHLKELGINAIELMPCNEYNELESYAYNAVMGGYKMNFW--GYSTLNFFSPMIRYSKS-GNSRCGLDAINEFKTLVREAHKRGIEVLMDVVFNHTGEGN--EMGP-TLSF-R---GVDN-----AVFYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPIVRRFIVECLRYWVIEMHIDGFRFDLATILTRSSSLWD-----------------KANVFGHTEGLEGDL-----LTTGSPLAEPPLID-MISNDPVLCDVKLIAEPW-DCGG-LSQVGKFPHWG-LWSEWNG---KFRDTVRQFIKGTD-----GV-VGDFANCLCGSPQ----------IYQD------------------GGRKPWH----SVNFTTAHDG-----FSLADLVSYNKKHNTANGEGN----RDGEDHNNSWNCGE---EG--ELVSL---HVHDLRQRQMRNL-LLALFVSQGIPMMTMGDEYAHTKGGNNNTYCHDN-----------YIN--YFRWDKKET--D---INGFYRFSRLLLNFRRE-----------------------CDSLGMEDFLTSDRLSWHGECPNMPDWS-ETSRFVAFTLIDS----------------------------------------------------------RYKELYVAFNASHLAKIVSLPLR-Q-GHKWQPLIDTSKCSPYD---FLA--------MD----------ILDKDV--AVAQYAHFLKSNIYPMSDYSSIVLHLVP----------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii" spec="Sequence" taxon="KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii" totalcount="20" value="---------------------------------------------------------------------------------------------------------------MQ-----RSLFKGNRCEGN---RASKTAAVEEGGKNVEEALNELVKEAD----------------------------------------EGLSDQKTDTDDVVALREALAAAHDRIASAENEKADALKALA--QAEAKVQEYADIVVKGTESALQEMQAAKESFHMELQHILEQKLAVESELVLAKQDALELAVSVD--K----------VADYVIKETTAHIAEDAMLKMAAAKTAAAEA-----------ALTVEERIKDATLEAANSMIEETRDAIEKSFAALEAAK--------------------------------DK---AQK--SEIALFQKMQILDDMVLKEASALGLQQAVSN-LQRQLQAAENEIQRLETEVKATLARAEAAEARA----AAADESLKQ-FQEKACQSAQEHEESAR-------------KALEALK-NAGAARLEAARSA----F----KSD---IEALQTALNTVHK----------AEKSQEKAYA---------------------RRYQALE---------------RALAASE-ALSIT-WK-------------ERALA--VEK-LLQRF--RTEGSDAA--G--GNG--GI-E---GVLTGGRMKALLGNDSRKWDLLANGPRRDTPEWMERRIEV-ALQGLPPRKHGQV--QQEADEKF-LLPGIEDVWCIATAK---------VK-----------------EDVYTQ-HAAEKEAIDEQRRVLEKTLS-----K---RSAR--RP--LKASESGTGSGYEIVLQGFNWES----------WR-KKWYLELGP-KAADISSCGITTIWFPPPTESVS----------------PQ--GYMPGDLYNLNSAY----GTE-------DELKNCVEEMHNHDLLVLGDVVLNHRCAQRKGPTGVW-NVF-G---------G-KLAWGPEAIVRDDPNFHGRGNPSSG--D--------FF-----HAA---PNIDHSQDFVRKDIVGWMKWLRTEIGFDGWRLDFVRGFWGGY-V-K-------------------EYIE-ATA-PVFA----IGEYW-----D--SL-A-------------YE---GGNV-CYNQ--------------D---AHRQRIVNWVNATG-----G-TSSAFDVTTKGILH----------AALH--------------------NEYWR----LIDPQGKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-------P-RDKLMQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDAITELIAVRRRTGVHCR--STVKIYH-------------------------ATNQ------------GYVAQIGE-------------------------------------NLV-MKLG-HLDWNPSK-------------------------QNNL-EG-NWQRCLDSGA--DYQ---IWE------------------------------------------------------RN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_NP_001324597.1_isoamylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_001324597.1_isoamylase_1_Arabidopsis_thaliana" totalcount="20" value="---MDA---I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KCSS------------------------------------------------------------SFLHHTKLN--------------------------TLFSNHTFPKISAPNFK-----------P------------------LFRPI---------------S-----------------------------------ISAK--D-----------RRSNEAEN---------------------IAVVEKPLKSD-----RFFISDG----LPSPFGPTVRDD------------------------------GVNFSVY-STNSVSATICLI----SLSDLRQ------------------------------------------------------------------NKVTEEIQLDPSRNRTGHVWH-VFLRG-DF-------------KD-ML--YGY-RFDGKFSP-----EE----GHYY--DSSNILLDPYAKA------------------------------I-ISRDEFG------V-----LGPD------------DNCW-------------------------------PQMACM-VP----------TR-EEE-----FDW---EGD--MHL--KL--PQKDLVIYEMHVRGFTRHESSKI-------EFPGTYQGVAE-KLDHLKELGINCIELMPCHEFNELEYYSYNTILGDHRVNFW--GYSTIGFFSPMIRYASA-SSNNFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGN--EKGP-IFSF-R---GVDN-----SVYYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWD-----------------AANVYGA--DVEGDL-----LTTGTPISCPPVID-MISNDPILRGVKLIAEAW-DAGG-LYQVGMFPHWG-IWSEWNG---KFRDVVRQFIKGTD-----GF-SGAFAECLCGSPN----------LYQ-------------------GGRKPWH----SINFICAHDG-----FTLADLVTYNNKNNLANGEEN----NDGENHNYSWNCGE---EG--DFASI---SVKRLRKRQMRNF-FVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDN-----------YMN--YFRWDKKEE--A---HSDFFRFCRILIKFREY-VIF-FHESID-LNCLVDRF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADPRW-----------------------------------------------NFHRSVI-----------------------------------KAVKTEEHVAR--EDLPVVRVDPLLAPHQDHLK---------------------YRFSQYEGRKK-----AIEKYEG----GLEKFSLGFQ-KFGF---------------------NYEDG-YIVYREW-APPAQAAQLIGD---------------FNN-----------------------WD-G------------------------WSHPMEK---------------DKYGVWS-VRIPD-VDGK-----------PG-IP--HGS-RVKFR--M-----QR--G--DGQWIDR-I---PAWIK------------------------------YATVE-------------------------------------AGKM-----GA-SYD------------------GI-L-W----------NPPEDQR-----YKF---E----HPR--PP--KPVVPRIYEAHVGMSSKEP------------CVASYIDFADNVLPRIKSNNYNTVQLMAVMEHSYYA--------------SF--GYHVTNFFGVSSRS----GTP-------EELKYLIDRAHSLGLRVLMDVVHSHASNNI--KDGLN--GF-DL-GQQTQ-----ESYFHTGDR--------GYH-------KL-------------WDS---RLFNYNNWEVERFLLSNLRWWLEEYQFDGFRFDGVTSMLYHHHGIH------------------MSFSG-RY-----R-----DYFSEASDVDAAVY-LMLAN------ELVHTLYPDATT-IAED--------------V---SGMPTLGRPVSEGGVGFD-YRLAMGIPDTWI-KLLK---------EVA---------------------DEHWS----MAEIAST---L-LNRRYTEKAIAYAESHDQSLVGDKT--LAFM-----LMDKEM---YAGMSALQEQSIIIERGIALHKMIH-FLTMALGGDGYLNFMGNEFGHPEWIDFPRE-----------GNKWSYDKCRRQWDLVDT--DHLRYKFMNEFDKAMNALEEKYHFLTL--PL-IVSST----------------------HDKDKV-------------IVFERGD-------------------------------------LVFVFNFH--PETTYEGYKI----------------------GCDL-PG-KYKIALDSDAF----DFGGRVRVGHDVDHFTSPEGIPGRPETNFNNRP----------SSFLVLSPARTCQVYF-KVPK------------------------------------------------DAVQSEEENEDVSQPAASVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLISQSAAQKELPFNFMDDIPDFSQ---D"/> + + <sequence id="seq_XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii" totalcount="20" value="---M-----------------------------------------------------------------------------------------------------------AS-----AAVIRPHSCSTF---IPGN-------------------------------------------------------------------------------RQGVRATG--IQKRLSYT-HFVNAAL--QRDSPVVEDSKRKTVTKQMSASTSDWSNESLKSELGNVLQEKIA-----ALEKQNVKDINKKAQ--K----------IAEFVLEEISRRSAK---RKDVVEKTSVADA-----------NLTVEKTVKDAASDAAVSVATELEAVADEARKALETAK--------------------------------EC---AQR--AEETLAQKLLLLEKVPKPELLLSTLEESVAS-LEKQLEIAKDDLSRLQFAADAAKSQAKVAEARA----AKADVTIQE-LRQKVGDAAQERASMFN-------------ETVESLR-ATASAREESLKVA----F----EAQ---LAALQAAMEASEK----------AKKIKEQANL---------------------RRFQAFE---------------NALAASE-ASLLA-WK-------------ERALN--SEG-LLQR----------------SDA--EW-S---VVFSDGRMTALLGGD-KIAELVEGGPRREIPDWMKKRIQA-AMQGIPPRHQTTVSADTETSKPL-ELPSLEEVWSVAKAK---------VKQ----------------DDLFSK-DVVAKETLDKQRRDLEQALGQTTITK---RKGR--VI--KEKPESGTGSGREIVFQGFNWES----------CR-KRWYQDLAP-KAADLSQSGITTVWFPPPTESVA----------------PQ--GYMPVDLYNLNSAY----GSM-------DELKHCIQEMHKHDLLVLGDVVLNHRCAYKQNSNGVW-NIF-G---------G-KLSWGPEAIVNDDPNFQGRGNPSSG--D--------IF-----HAA---PNIDHSQAFVRKDIKEYLDWLKTEIGYDGWRLDFVRGFWGGY-V-K-------------------EYIE-ASE-PAFA----IGEYW-----D--SL-L-------------YE---GGNV-AYNQ--------------D---AHRQRIIDWINATG-----G-TSSAFDVTTKGILH----------AALH--------------------NEYWR----LIDPRQKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-------P-RDKLLQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDPIVDLIAARNRTGINCR--SPVKIFH-------------------------ANND------------GYVAKVGE-------------------------------------QLV-VKLG-RFDWNPSK-------------------------QNDL-IG-NWKRSVGQGS--DYQ---VWE------------------------------------------------------EE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group" totalcount="20" value="---MDS---CA--------------------LFL-------------------------------------------------------------------------------STPRP-----PPPLVPAHRRRPLASRSGLRRREGCPCSCASSSSSSG----------------------------------------RAGSQDRPPRPWQQKQRTQRPGRGEAIDPVGFLAKHGIS----------------------------------------------------------DRAFAQFLRDR--Y----------KALKDRRWELHSRLIDLKEASSGFELMGMHR-----------HRQHRVDFMEWAPGARYCSVVGDFNQWSTTENCAREGHLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGE--------------------------------------IKSQKS----RLEVVAKLYE-QMFGP----------NGPQTEEELGDIPDA-ETRYNEW-KALQKDDSASSLPCYDI----IDNGQEFDI-----------------------FN-V------------------------ATDRVSF---------------EKFQGKS-PPLAYWVEMRKGRKAWLEKYVPA-IS--HKD-KYRVY--F-----NT--P--DGG-LER-I---PAWATYVLPG-------------------SPNLSFFCVDA-------------------------------------EGK---------QSY------------------AV-H-W----------DPPPEEI-----YKW---R----FER--PK--VKGSLRIYECHVGISGSEQ------------KISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYS--------------SV--GYKVTNYFSVSSRF----GSP-------DDFKKLVDEAHGLGLVVLLDIVHSYASADE--LVGLS--LF-DG----SN-----DCYFHSGKR--------GHH-------KY-------------WGT---RMFKYDDIDVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFS-------------------TFTG-AT-----E-----EYYNQYVDEDALIY-LIIAN------EMLHELHPDIIT-IAED--------------A---TFYPGLCEPTTQGGLGFD-YWVNLSIPEMWL-WHLE---------NVP---------------------EQEWS----MNKIMRV---L-VNNNS--NMLSYVENHNQSISGRKS--FAEI-----ILYEGK---CSNSSVDND---LIFRASSLLNIIK-LITFTTSGGAYLNFIGNEFAHPKRIEFPMS-----------SNDYSFCLANRQWELLDK--GV--HKHIFNFDKDIMSLDGKERLISG--GSPIVHHC----------------------DDTSMI-------------IYFTRGP-------------------------------------FLFVFNFN--PDASYQLYSV----------------------GVDE-AG-EYQLILNTDET----KYGGRGELTSNQYMKRT-------SDNRVGGCR----------NSLELTLPSRSAQVFK-LVRILRI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group" totalcount="20" value="---M----------------------------------------------------------------------------A---VAS-------------------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPGSVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLSG--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP---------------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDTDIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGSGFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW-----D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------SALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-------P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKIHCR--SKIKILK-------------------------AEGN------------LYAAEIDE-------------------------------------RVT-MKIGA-GHFEPSG-------------------------PT------NWVV-AAEGQ--DYK---VWE------------------------------------------------------VSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="---MAM---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAMG----------------------------------------------------------VGGHRSSSAGAV------------FTSQVCSRGAGVGTKVAVRVDHVVKAIKADDGSGNGKEKNTL--------GWKSTH---LSARPL---------------T-----------------------------------ICRV--AG---------VSSDSANTE---------------------TESKEEAGHRL-----CGPPLRG----RPLPFGATACEE------------------------------GVNFAVH-SSGATAVALCLF----TESDLQQ------------------------------------------------------------------GVVTKEVPLHPVFNRTGDVWH-IFLPD-LQ-------------SN-LL--YGY-RVDGRYIL-----EE----GACY--DARRILVDPYAKA------------------------------V-ISRERYG------T-----LGEG------------GDCW-------------------------------PQMAGM-IP----------DL-HDE-----FDW---DGD--FPP--RI--PQKDLVIYEMHVRGFTKHASSEV-------EHPGTYIGMIE-KLAYLKALGINAIELMPSHEFNELEYHAYNPMMSDYKMNFW--GYSTINFFSPMIRYASA-GNKNCGKEAIKEFKSLVREAHKLGMEVLMDVVFNHTAEGN--EMGP-TISF-R---GFDN-----HVYYMIAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRRFIIDCLRYWVTEMHVDGFRFDLASIMTRASSLWD-----------------KVNVFGRSDELVNDT-----VTTGTPLNEPPLID-MISNDPVLRGVKLIAEAW-DCGG-LYQVGSFPHWG-VWSEWNG---QFRDMVRLFIKGTE-----GT-AGIFAQCLCGSPH----------LYQE------------------GGRKPWH----SINFITAHDG-----FTLADLVSYNQKHNVANGEDN----NDGDNHNNSWNCGE---EG--EVVSI---PVQRLRQRQLRNF-FVALMVSQGVPMITMGDEYGHTKGGNNNTYCHDN-----------FIN--YFRWDMKRA--D---PNGFHRFASLMMNFRSG-----------------------TECLRLGDFLTGDRLEWHGIFPNTPDWT-ESSKFVAFTLVDQ----------------------------------------------------------QKRELYIAFNASHLPVMVTLPDR-V-GAKWYPLVDTSKPTPYD---FLV--------DD----------VPNIDV--VLAQTSNFLNSNLYPMISYSSIVLVLKDEDA-------------------------------------------------------------------------------------------------------------------F----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="---MAM---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAIV----------------------------------------------------------SGAIPSASP---------------DAPRVCHRGDAAAASCSDRAPPHCVNLARG--------WHCR--------GKISWWRHCNGGDPV---------------V-----------------------------------SCRA--ME---------TST-SSYSS-----------------------SESVDVKKL-----AGSPKRG----RPLPFGATPVEG------------------------------GVNFSVH-SSGAIAVSLCLF----TEEDLQK------------------------------------------------------------------GRVSKEFPLHPVFNRTGDVWH-VYLPD-VC-------------PN-LL--YGY-RLNGKFSL-----EE----GCCY--DLSRILVDPYAKA------------------------------V-VSRGKYG------A-----LGPG------------NSCW-------------------------------PQMAGM-VP----------QL-NDE-----FDW---QGD--SPP--RH--KQKDLIIYELHMRGFTQHPSSNV-------DFPGTYLGALE-KLPHLKDLGINAIELMPIHEFNELEYYSYNPVMGDHKMNYW--GYSTINFFSPMTRYASS-GIQNCGRDAIKEFKTFVREAHKLGIEVFMDVVFNHTAEGN--EMGP-IISF-R---GLDN-----RVYYMTAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRRFIVDCLRYWVLEMHIDGFRFDLASILTRASSLWD-----------------KANVFGTSEDVDGDS-----VTTGTPLSEPPLID-MISNDPVLRGVKLIAEAW-DSGG-LYQVGNFPHWG-IWSEWNG---QYRDTVRLFIKGTD-----GL-AGAFAQCLCGSPH----------LYQD------------------GGRKPWH----SVNFVTAHDG-----FTLLDLVSYNSKHNIANGESN----NDGETHNNSWNCGE---EG--ELVSI---RVRRLRHRQLRNF-LVALMVSQGVPMVTMGDEYAHTKGGNNNTYCHDN-----------AIN--YFRWDKLRT--D---PTGLFRFSRHLFNFRRQ-----------------------SESLGLGDFPTAERLEWHGVVPETPDWS-ETSRFVAFSLVDA----------------------------------------------------------KKRELYIAFNTSHLPVLVTLPER-P-GFKWQPVVDSSKPAPYD---FLA--------DD----------IPDLAT--AYAQYSPLLNAQIYPMISYSSVILVLVPLNE-------------------------------------------------------------------------------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + </data> + + <data +id="g41182_select" +spec="Alignment" +dataType="aminoacid" +name="alignment"> + + <sequence id="seq_CBr_g41182_beta-amylase_3" spec="Sequence" taxon="CBr_g41182_beta-amylase_3" totalcount="20" value="------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR---------------------------------------------------------------------------------------------------------------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIARTETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETSTESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS--PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGAPKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPTGRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G------T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRRLGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVVEVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFFLEWYSGALLQHGERMLRAACRAFF-DV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS-----------------------------------------------PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLAAARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----GEAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD--------------------------------------------------------------LDLDFDF------------------------DFDFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-----------------------------------------D"/> + + <sequence id="seq_EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" totalcount="20" value="---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITGRKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K"/> + + <sequence id="seq_EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_GAQ79600.1_beta-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ79600.1_beta-amylase_Klebsormidium_nitens" totalcount="20" value="------------------------------------------------------------MSSGTPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLPG-S------G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHSMGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIVEVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFFLSWYAENLAAHGDRVLGAAAAVFQ-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQTAARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLEDPKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMQ---L"/> + + <sequence id="seq_KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" spec="Sequence" taxon="KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" totalcount="20" value="------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM----------------------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF------CRR-GFSVRGLVEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TK--RQPR--SIVDV---------------CLP---------C-----------------------------------------------------------------------------------------------------SPSLFEDGD------------------------------------------------------------------------------------------------------------------------------------LFLQQKV-H-------RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" spec="Sequence" taxon="KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT------PR--RLRAKNSLQDAHITREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITSPFEGMFDEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIVEIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFFMQWYSGKLVQHGDRILNSANAIFT-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMAVQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + <sequence id="seq_NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" spec="Sequence" taxon="NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA------PSR-RPRALRAAAATATAPSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATHRAPAEA------------------------------------------------------------------------------------------------------------------------------AELLHGGG-A------G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFFLEWYSGMLLEHGDRVMDAAEAVFG-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAATSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--L---"/> + + <sequence id="seq_NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA------MNR-NYKAHGTDPSPPMSPILGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAD---------------------------------------------------------------------------------------------------LSVACKAFAVENGI------------------------------------------------------------------------------------------------------------------------------GTIEEQRT-Y------R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFE-NM-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-TH---"/> + + <sequence id="seq_OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" spec="Sequence" taxon="OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" totalcount="20" value="------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR---------------------------------------------------------------------------------------------------------------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNVCCKS--CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V--------------------------------------------------------------------------------------------------KIQERLAVKSAQIIG-------------------------------------------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/> + + <sequence id="seq_PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" spec="Sequence" taxon="PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRIYQA------------------S----------------------------------DA--RM-A------P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVASKGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVITEVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFFLNWYSGLLNQHADRLLGAARQVLS-AR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CR-------------PRTMREARELSDG-----------------------------------------------GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLSTAARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/> + + <sequence id="seq_PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" spec="Sequence" taxon="PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" totalcount="20" value="------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL---------------------------------------------------------------------------------------------------------------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPISSNS--R--------RDSPRMI-----------R------AEAAQQEGDV--A-V--------------------------------------------------------------------------------------------------RTQELTVEKPVES------------------------------------------------------------------------------------------------------------------------------TEDDQVKV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H"/> + + <sequence id="seq_XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MPTS-------------------------------------------------LPQC-----------PS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR-------------------------Q-------------------------------------------------VTHPTAHPRTSR----------------------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS----------------------------------------------------------------------------------------------------------------------------------------------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y------P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAAAGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVITEVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFFLSWYSNMLLEHADRVLSSAAEVLN-KH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-------------PRVFNSMRDASNG-----------------------------------------------HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEAAEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A"/> + + <sequence id="seq_XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MSSSS-------------------------------------------------------------------------------------------------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE------EWW-KQQPQQHRSSSPISCFP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQVASHG--PALA------PDFFEE-----------R--------PFELQ--HGIS---------------------------------------------------------------------------------------------------SPSPSGF----PSK------------------------------------------------------------------------------------------------------------------------------IAPPVEKE-H------S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + <sequence id="seq_XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" spec="Sequence" taxon="XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT------TR--RLRTRNSIQDAQLSREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MISPFEGMYDAQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIVEIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFFMEWYSGKLLEHGDKILGSADRIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLAVKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--L---"/> + + <sequence id="seq_XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="------MSIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRDCKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTITEIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFFLDWYSRALIEHGDNLLTVARHALG-NT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRAAWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C"/> + + <sequence id="seq_XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP------GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLS-SEE--WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM---------------------------------------------------------------------------------------------------DTMFPEHKSLLDWD------------------------------------------------------------------------------------------------------------------------------NTADEWKE-H------A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRKHGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VIIEIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFFMEWYSEMILAHGERLLASASGIFK-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALATRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LM-Y---"/> + + <sequence id="seq_XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITARKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V"/> + + <sequence id="seq_XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT------TSL-RMKRQAACE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------VA-----------------------------------------------------------------------------------------------------------------------------------CRAVAR-----------HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFFLSWYSQMLLEHGERVLSGATSVFGDGA-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAAARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP----RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-RS---"/> + + <sequence id="seq_XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" totalcount="20" value="---------M---------------------------------------------------RASIDRQCC---AAASSPA-S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL--------------------------------------------------------------------------------------------------------------T----------------------SPTPVAA-----------G------ATARA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRDEGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIVDVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFFLQWYSDMLMQHADSVLGIARDVLL-PAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYGNGYGNGNGIWRG---------------------------------------SPAAAAEPPR------------------------------------------------------------------------------------------------------------------------------------------------------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTVAAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSNVAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA--------------------------------------------------------------TGAAGGGGDA------------------GMTAAAPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGALQL----------------------------------V"/> + + <sequence id="seq_XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y----------------------------------------------------------------------------------------------------------------------------------L---------------------------------------------------------------------------------------------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS-----------------------------------F-----------------------------------------------------GQSGVLR-P----------------------HPRRYSQ-----------N------AFGTS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQTGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVIDEVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFFLEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGMNSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCCTYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTRGVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAHPLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTTTGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQAQLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGGGAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQLAARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNGYGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP--------------------------------------------------------------EMLLPGYQSL------------------WMRFMGKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA----------------------------------------S"/> + + <sequence id="seq_XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" spec="Sequence" taxon="XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI------IL--RRRLIKSSMQSEINVQYN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA-----P---------------------------PPQK--SI-----------------------------------------------------------------------------------------------------MMTSSPFEGTYEEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-T------S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQRHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFFMEWYSGKLLQHGDRILGSADSIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMAVKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + </data> + + + + + + + + + + + + + + + + + <map name="Uniform" >beast.base.inference.distribution.Uniform</map> + + + + <map name="Exponential" >beast.base.inference.distribution.Exponential</map> + + + + <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map> + + + + <map name="Normal" >beast.base.inference.distribution.Normal</map> + + + + <map name="Beta" >beast.base.inference.distribution.Beta</map> + + + + <map name="Gamma" >beast.base.inference.distribution.Gamma</map> + + + + <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map> + + + + <map name="prior" >beast.base.inference.distribution.Prior</map> + + + + <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map> + + + + <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map> + + + + <run id="mcmc" spec="MCMC" chainLength="1000000"> + + <state id="state" spec="State" storeEvery="5000"> + + <tree id="Tree.t:g31563_select" spec="beast.base.evolution.tree.Tree" name="stateNode"> + + <taxonset id="TaxonSet.g31563_select" spec="TaxonSet"> + + <alignment idref="g31563_select"/> + + </taxonset> + + </tree> + + <parameter id="birthRate.t:g31563_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter> + + <tree id="Tree.t:g41182_select" spec="beast.base.evolution.tree.Tree" name="stateNode"> + + <taxonset id="TaxonSet.g41182_select" spec="TaxonSet"> + + <alignment idref="g41182_select"/> + + </taxonset> + + </tree> + + <parameter id="birthRate.t:g41182_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter> + + </state> + + <init id="RandomTree.t:g31563_select" spec="RandomTree" estimate="false" initial="@Tree.t:g31563_select" taxa="@g31563_select"> + + <populationModel id="ConstantPopulation0.t:g31563_select" spec="ConstantPopulation"> + + <parameter id="randomPopSize.t:g31563_select" spec="parameter.RealParameter" name="popSize">1.0</parameter> + + </populationModel> + + </init> + + <init id="RandomTree.t:g41182_select" spec="RandomTree" estimate="false" initial="@Tree.t:g41182_select" taxa="@g41182_select"> + + <populationModel id="ConstantPopulation0.t:g41182_select" spec="ConstantPopulation"> + + <parameter id="randomPopSize.t:g41182_select" spec="parameter.RealParameter" name="popSize">1.0</parameter> + + </populationModel> + + </init> + + <distribution id="posterior" spec="CompoundDistribution"> + + <distribution id="prior" spec="CompoundDistribution"> + + <distribution id="YuleModel.t:g31563_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g31563_select" tree="@Tree.t:g31563_select"/> + + <distribution id="YuleModel.t:g41182_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g41182_select" tree="@Tree.t:g41182_select"/> + + <prior id="YuleBirthRatePrior.t:g31563_select" name="distribution" x="@birthRate.t:g31563_select"> + + <Uniform id="Uniform.1" name="distr" upper="Infinity"/> + + </prior> + + <prior id="YuleBirthRatePrior.t:g41182_select" name="distribution" x="@birthRate.t:g41182_select"> + + <Uniform id="Uniform.4" name="distr" upper="Infinity"/> + + </prior> + + </distribution> + + <distribution id="likelihood" spec="CompoundDistribution" useThreads="true"> + + <distribution id="treeLikelihood.g31563_select" spec="ThreadedTreeLikelihood" data="@g31563_select" tree="@Tree.t:g31563_select"> + + <siteModel id="SiteModel.s:g31563_select" spec="SiteModel"> + + <parameter id="mutationRate.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter> + + <parameter id="gammaShape.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter> + + <parameter id="proportionInvariant.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> + + <substModel id="Blosum62.s:g31563_select" spec="Blosum62"/> + + </siteModel> + + <branchRateModel id="StrictClock.c:g31563_select" spec="beast.base.evolution.branchratemodel.StrictClockModel"> + + <parameter id="clockRate.c:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter> + + </branchRateModel> + + </distribution> + + <distribution id="treeLikelihood.g41182_select" spec="ThreadedTreeLikelihood" data="@g41182_select" tree="@Tree.t:g41182_select"> + + <siteModel id="SiteModel.s:g41182_select" spec="SiteModel"> + + <parameter id="mutationRate.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter> + + <parameter id="gammaShape.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter> + + <parameter id="proportionInvariant.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> + + <substModel id="Blosum62.s:g41182_select" spec="Blosum62"/> + + </siteModel> + + <branchRateModel id="StrictClock.c:g41182_select" spec="beast.base.evolution.branchratemodel.StrictClockModel"> + + <parameter id="clockRate.c:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter> + + </branchRateModel> + + </distribution> + + </distribution> + + </distribution> + + <operator id="YuleBirthRateScaler.t:g31563_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g31563_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelTreeRootScaler.t:g31563_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g31563_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelUniformOperator.t:g31563_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g31563_select" weight="30.0"/> + + <operator id="YuleModelSubtreeSlide.t:g31563_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g31563_select" weight="15.0"/> + + <operator id="YuleModelNarrow.t:g31563_select" spec="Exchange" tree="@Tree.t:g31563_select" weight="15.0"/> + + <operator id="YuleModelWide.t:g31563_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g31563_select" weight="3.0"/> + + <operator id="YuleModelWilsonBalding.t:g31563_select" spec="WilsonBalding" tree="@Tree.t:g31563_select" weight="3.0"/> + + <operator id="YuleModelBICEPSEpochTop.t:g31563_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g31563_select" weight="2.0"/> + + <operator id="YuleModelBICEPSEpochAll.t:g31563_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g31563_select" weight="2.0"/> + + <operator id="YuleModelBICEPSTreeFlex.t:g31563_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g31563_select" weight="2.0"/> + + <operator id="YuleBirthRateScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g41182_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelTreeRootScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g41182_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelUniformOperator.t:g41182_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g41182_select" weight="30.0"/> + + <operator id="YuleModelSubtreeSlide.t:g41182_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g41182_select" weight="15.0"/> + + <operator id="YuleModelNarrow.t:g41182_select" spec="Exchange" tree="@Tree.t:g41182_select" weight="15.0"/> + + <operator id="YuleModelWide.t:g41182_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g41182_select" weight="3.0"/> + + <operator id="YuleModelWilsonBalding.t:g41182_select" spec="WilsonBalding" tree="@Tree.t:g41182_select" weight="3.0"/> + + <operator id="YuleModelBICEPSEpochTop.t:g41182_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/> + + <operator id="YuleModelBICEPSEpochAll.t:g41182_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/> + + <operator id="YuleModelBICEPSTreeFlex.t:g41182_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g41182_select" weight="2.0"/> + + <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + <log idref="treeLikelihood.g31563_select"/> + + <log id="TreeHeight.t:g31563_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g31563_select"/> + + <log idref="YuleModel.t:g31563_select"/> + + <log idref="birthRate.t:g31563_select"/> + + <log idref="treeLikelihood.g41182_select"/> + + <log id="TreeHeight.t:g41182_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g41182_select"/> + + <log idref="YuleModel.t:g41182_select"/> + + <log idref="birthRate.t:g41182_select"/> + + </logger> + + <logger id="screenlog" spec="Logger" logEvery="1000"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + </logger> + + <logger id="treelog.t:g31563_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree"> + + <log id="TreeWithMetaDataLogger.t:g31563_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g31563_select"/> + + </logger> + + <logger id="treelog.t:g41182_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree"> + + <log id="TreeWithMetaDataLogger.t:g41182_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g41182_select"/> + + </logger> + + <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/> + + </run> + + + +</beast> diff --git a/runs/BEAST/xml_files/g41182_select_1e6.xml b/runs/BEAST/xml_files/g41182_select_1e6.xml new file mode 100644 index 0000000000000000000000000000000000000000..a310980e1828c42214c354d76056ab9d341e5303 --- /dev/null +++ b/runs/BEAST/xml_files/g41182_select_1e6.xml @@ -0,0 +1,239 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7"> + + + <data +id="g41182_select" +spec="Alignment" +dataType="aminoacid" +name="alignment"> + + <sequence id="seq_CBr_g41182_beta-amylase_3" spec="Sequence" taxon="CBr_g41182_beta-amylase_3" totalcount="20" value="------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR---------------------------------------------------------------------------------------------------------------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIARTETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETSTESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS--PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGAPKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPTGRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G------T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRRLGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVVEVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFFLEWYSGALLQHGERMLRAACRAFF-DV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS-----------------------------------------------PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLAAARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----GEAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD--------------------------------------------------------------LDLDFDF------------------------DFDFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-----------------------------------------D"/> + + <sequence id="seq_EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" totalcount="20" value="---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITGRKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K"/> + + <sequence id="seq_EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_GAQ79600.1_beta-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ79600.1_beta-amylase_Klebsormidium_nitens" totalcount="20" value="------------------------------------------------------------MSSGTPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLPG-S------G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHSMGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIVEVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFFLSWYAENLAAHGDRVLGAAAAVFQ-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQTAARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLEDPKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMQ---L"/> + + <sequence id="seq_KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" spec="Sequence" taxon="KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" totalcount="20" value="------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM----------------------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF------CRR-GFSVRGLVEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TK--RQPR--SIVDV---------------CLP---------C-----------------------------------------------------------------------------------------------------SPSLFEDGD------------------------------------------------------------------------------------------------------------------------------------LFLQQKV-H-------RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/> + + <sequence id="seq_KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" spec="Sequence" taxon="KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT------PR--RLRAKNSLQDAHITREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITSPFEGMFDEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIVEIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFFMQWYSGKLVQHGDRILNSANAIFT-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMAVQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + <sequence id="seq_NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" spec="Sequence" taxon="NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA------PSR-RPRALRAAAATATAPSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATHRAPAEA------------------------------------------------------------------------------------------------------------------------------AELLHGGG-A------G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFFLEWYSGMLLEHGDRVMDAAEAVFG-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAATSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--L---"/> + + <sequence id="seq_NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA------MNR-NYKAHGTDPSPPMSPILGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAD---------------------------------------------------------------------------------------------------LSVACKAFAVENGI------------------------------------------------------------------------------------------------------------------------------GTIEEQRT-Y------R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFE-NM-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-TH---"/> + + <sequence id="seq_OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" spec="Sequence" taxon="OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" totalcount="20" value="------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR---------------------------------------------------------------------------------------------------------------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNVCCKS--CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V--------------------------------------------------------------------------------------------------KIQERLAVKSAQIIG-------------------------------------------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/> + + <sequence id="seq_PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" spec="Sequence" taxon="PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRIYQA------------------S----------------------------------DA--RM-A------P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVASKGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVITEVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFFLNWYSGLLNQHADRLLGAARQVLS-AR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CR-------------PRTMREARELSDG-----------------------------------------------GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLSTAARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/> + + <sequence id="seq_PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" spec="Sequence" taxon="PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" totalcount="20" value="------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL---------------------------------------------------------------------------------------------------------------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPISSNS--R--------RDSPRMI-----------R------AEAAQQEGDV--A-V--------------------------------------------------------------------------------------------------RTQELTVEKPVES------------------------------------------------------------------------------------------------------------------------------TEDDQVKV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H"/> + + <sequence id="seq_XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MPTS-------------------------------------------------LPQC-----------PS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR-------------------------Q-------------------------------------------------VTHPTAHPRTSR----------------------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS----------------------------------------------------------------------------------------------------------------------------------------------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y------P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAAAGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVITEVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFFLSWYSNMLLEHADRVLSSAAEVLN-KH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-------------PRVFNSMRDASNG-----------------------------------------------HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEAAEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A"/> + + <sequence id="seq_XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MSSSS-------------------------------------------------------------------------------------------------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE------EWW-KQQPQQHRSSSPISCFP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQVASHG--PALA------PDFFEE-----------R--------PFELQ--HGIS---------------------------------------------------------------------------------------------------SPSPSGF----PSK------------------------------------------------------------------------------------------------------------------------------IAPPVEKE-H------S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + <sequence id="seq_XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" spec="Sequence" taxon="XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT------TR--RLRTRNSIQDAQLSREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MISPFEGMYDAQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIVEIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFFMEWYSGKLLEHGDKILGSADRIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLAVKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--L---"/> + + <sequence id="seq_XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="------MSIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRDCKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTITEIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFFLDWYSRALIEHGDNLLTVARHALG-NT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRAAWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C"/> + + <sequence id="seq_XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP------GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLS-SEE--WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM---------------------------------------------------------------------------------------------------DTMFPEHKSLLDWD------------------------------------------------------------------------------------------------------------------------------NTADEWKE-H------A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRKHGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VIIEIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFFMEWYSEMILAHGERLLASASGIFK-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALATRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LM-Y---"/> + + <sequence id="seq_XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITARKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V"/> + + <sequence id="seq_XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT------TSL-RMKRQAACE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------VA-----------------------------------------------------------------------------------------------------------------------------------CRAVAR-----------HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFFLSWYSQMLLEHGERVLSGATSVFGDGA-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAAARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP----RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-RS---"/> + + <sequence id="seq_XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" totalcount="20" value="---------M---------------------------------------------------RASIDRQCC---AAASSPA-S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL--------------------------------------------------------------------------------------------------------------T----------------------SPTPVAA-----------G------ATARA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRDEGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIVDVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFFLQWYSDMLMQHADSVLGIARDVLL-PAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYGNGYGNGNGIWRG---------------------------------------SPAAAAEPPR------------------------------------------------------------------------------------------------------------------------------------------------------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTVAAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSNVAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA--------------------------------------------------------------TGAAGGGGDA------------------GMTAAAPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGALQL----------------------------------V"/> + + <sequence id="seq_XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y----------------------------------------------------------------------------------------------------------------------------------L---------------------------------------------------------------------------------------------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS-----------------------------------F-----------------------------------------------------GQSGVLR-P----------------------HPRRYSQ-----------N------AFGTS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQTGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVIDEVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFFLEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGMNSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCCTYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTRGVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAHPLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTTTGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQAQLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGGGAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQLAARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNGYGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP--------------------------------------------------------------EMLLPGYQSL------------------WMRFMGKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA----------------------------------------S"/> + + <sequence id="seq_XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" spec="Sequence" taxon="XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI------IL--RRRLIKSSMQSEINVQYN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA-----P---------------------------PPQK--SI-----------------------------------------------------------------------------------------------------MMTSSPFEGTYEEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-T------S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQRHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFFMEWYSGKLLQHGDRILGSADSIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMAVKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/> + + </data> + + + + + + + + + + + + + + + + + <map name="Uniform" >beast.base.inference.distribution.Uniform</map> + + + + <map name="Exponential" >beast.base.inference.distribution.Exponential</map> + + + + <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map> + + + + <map name="Normal" >beast.base.inference.distribution.Normal</map> + + + + <map name="Beta" >beast.base.inference.distribution.Beta</map> + + + + <map name="Gamma" >beast.base.inference.distribution.Gamma</map> + + + + <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map> + + + + <map name="prior" >beast.base.inference.distribution.Prior</map> + + + + <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map> + + + + <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map> + + + + <run id="mcmc" spec="MCMC" chainLength="1000000"> + + <state id="state" spec="State" storeEvery="5000"> + + <tree id="Tree.t:g41182_select" spec="beast.base.evolution.tree.Tree" name="stateNode"> + + <taxonset id="TaxonSet.g41182_select" spec="TaxonSet"> + + <alignment idref="g41182_select"/> + + </taxonset> + + </tree> + + <parameter id="birthRate.t:g41182_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter> + + </state> + + <init id="RandomTree.t:g41182_select" spec="RandomTree" estimate="false" initial="@Tree.t:g41182_select" taxa="@g41182_select"> + + <populationModel id="ConstantPopulation0.t:g41182_select" spec="ConstantPopulation"> + + <parameter id="randomPopSize.t:g41182_select" spec="parameter.RealParameter" name="popSize">1.0</parameter> + + </populationModel> + + </init> + + <distribution id="posterior" spec="CompoundDistribution"> + + <distribution id="prior" spec="CompoundDistribution"> + + <distribution id="YuleModel.t:g41182_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g41182_select" tree="@Tree.t:g41182_select"/> + + <prior id="YuleBirthRatePrior.t:g41182_select" name="distribution" x="@birthRate.t:g41182_select"> + + <Uniform id="Uniform.4" name="distr" upper="Infinity"/> + + </prior> + + </distribution> + + <distribution id="likelihood" spec="CompoundDistribution" useThreads="true"> + + <distribution id="treeLikelihood.g41182_select" spec="ThreadedTreeLikelihood" data="@g41182_select" tree="@Tree.t:g41182_select"> + + <siteModel id="SiteModel.s:g41182_select" spec="SiteModel"> + + <parameter id="mutationRate.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter> + + <parameter id="gammaShape.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter> + + <parameter id="proportionInvariant.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> + + <substModel id="Blosum62.s:g41182_select" spec="Blosum62"/> + + </siteModel> + + <branchRateModel id="StrictClock.c:g41182_select" spec="beast.base.evolution.branchratemodel.StrictClockModel"> + + <parameter id="clockRate.c:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter> + + </branchRateModel> + + </distribution> + + </distribution> + + </distribution> + + <operator id="YuleBirthRateScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g41182_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelTreeRootScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g41182_select" upper="10.0" weight="3.0"/> + + <operator id="YuleModelUniformOperator.t:g41182_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g41182_select" weight="30.0"/> + + <operator id="YuleModelSubtreeSlide.t:g41182_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g41182_select" weight="15.0"/> + + <operator id="YuleModelNarrow.t:g41182_select" spec="Exchange" tree="@Tree.t:g41182_select" weight="0.0"/> + + <operator id="YuleModelWide.t:g41182_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g41182_select" weight="3.0"/> + + <operator id="YuleModelWilsonBalding.t:g41182_select" spec="WilsonBalding" tree="@Tree.t:g41182_select" weight="3.0"/> + + <operator id="YuleModelBICEPSEpochTop.t:g41182_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/> + + <operator id="YuleModelBICEPSEpochAll.t:g41182_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/> + + <operator id="YuleModelBICEPSTreeFlex.t:g41182_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g41182_select" weight="2.0"/> + + <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + <log idref="treeLikelihood.g41182_select"/> + + <log id="TreeHeight.t:g41182_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g41182_select"/> + + <log idref="YuleModel.t:g41182_select"/> + + <log idref="birthRate.t:g41182_select"/> + + </logger> + + <logger id="screenlog" spec="Logger" logEvery="1000"> + + <log idref="posterior"/> + + <log idref="likelihood"/> + + <log idref="prior"/> + + </logger> + + <logger id="treelog.t:g41182_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree"> + + <log id="TreeWithMetaDataLogger.t:g41182_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g41182_select"/> + + </logger> + + <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/> + + </run> + + + +</beast> diff --git a/runs/herebeBEASTruns.txt b/runs/herebeBEASTruns.txt deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/runs/herebegalaxyanalysis.txt b/runs/herebegalaxyanalysis.txt deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/runs/ppl14025-sup-0002-table.xlsx b/runs/ppl14025-sup-0002-table.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..3dd96d20d5c9e61a9ba9cba16ab9aa001f8fd863 Binary files /dev/null and b/runs/ppl14025-sup-0002-table.xlsx differ diff --git a/workflows/BEASTworkflow.txt b/workflows/BEASTworkflow.txt new file mode 100644 index 0000000000000000000000000000000000000000..391980c7240d762d8e090a772d0493cf2149a1ff --- /dev/null +++ b/workflows/BEASTworkflow.txt @@ -0,0 +1,17 @@ +Input: amino acid sequences aligned with M-coffee +BEAST version 2.7.3 +BEAUTi settings: + Gamma Site Model, Substitution Model Blosum62 + Strict Clock - mean clock rate 1.0 + Prior Yule model, uniform (0,0,infinity), initial [1.0][0.0,infinite] + MCMC chain length 1e6, store every 1e4, no pre Burnin, num init attempts 10 +Tracer v1.7.2: + validate ESS > 200 +TreeAnnotator: + maximum clade credibility tree + burnIn 50% + posterior probability limit 0.5 (median node heights) +FigTree v1.4.4: + visualisation of generated dendrograms + - display tip labels, node labels (posterior) + \ No newline at end of file diff --git a/workflows/RNAseqWorkflow_Data.png b/workflows/RNAseqWorkflow_Data.png new file mode 100644 index 0000000000000000000000000000000000000000..3387645178c5230115c49ae94ef3522dbe09fbec Binary files /dev/null and b/workflows/RNAseqWorkflow_Data.png differ diff --git a/workflows/herebeBEASTworkflow.txt b/workflows/herebeBEASTworkflow.txt deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/workflows/herebeDatacuration.txt b/workflows/herebeDatacuration.txt deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/workflows/herebegalaxyworkflow.txt b/workflows/herebegalaxyworkflow.txt deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000