diff --git a/runs/FSharpArcCapsule.yml b/runs/FSharpArcCapsule.yml
index 5da154dc5032f90c826819412e2c351b94019c0c..6ecc43b77793c3fdd10abaf2a1f39e3a683a962d 100644
--- a/runs/FSharpArcCapsule.yml
+++ b/runs/FSharpArcCapsule.yml
@@ -1,7 +1,3 @@
-scriptFile:
- class: File
- path: ../workflows/FSharpArcCapsule/script.fsx
-firstArg:
- class: File
- path: ../assays/measurement1/dataset/table.csv
-secondArg: ./result.csv
+arcDirectory:
+ class: Directory
+ path: ../
diff --git a/runs/result.csv b/runs/result.csv
new file mode 100644
index 0000000000000000000000000000000000000000..55137a39f41b555f9b7d26505f9c15240eec09ee
--- /dev/null
+++ b/runs/result.csv
@@ -0,0 +1,651 @@
+Sum_1-2
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diff --git a/workflows/FSharpArcCapsule.cwl b/workflows/FSharpArcCapsule.cwl
index 9e14f7430066fc86d42f1b3365c69e78691668ef..260293673e45d57e81855f73c708fd54e75de6af 100644
--- a/workflows/FSharpArcCapsule.cwl
+++ b/workflows/FSharpArcCapsule.cwl
@@ -4,28 +4,23 @@ hints:
DockerRequirement:
dockerPull: mcr.microsoft.com/dotnet/sdk:6.0
requirements:
- EnvVarRequirement:
+ - class: InitialWorkDirRequirement
+ listing:
+ - entryname: arc
+ entry: $(inputs.arcDirectory)
+ writable: true
+ - class: EnvVarRequirement
envDef:
- envName: DOTNET_NOLOGO
envValue: "true"
- NetworkAccess:
+ - class: NetworkAccess
networkAccess: true
-baseCommand: [dotnet, fsi]
+baseCommand: [dotnet, fsi, "./arc/workflows/FSharpArcCapsule/script.fsx"]
inputs:
- scriptFile:
- type: File
- inputBinding:
- position: 1
- firstArg:
- type: File
- inputBinding:
- position: 2
- secondArg:
- type: string
- inputBinding:
- position: 3
+ arcDirectory:
+ type: Directory
outputs:
output:
type: File
outputBinding:
- glob: "*.csv"
\ No newline at end of file
+ glob: "./arc/runs/fsResult1/result.csv"
\ No newline at end of file
diff --git a/workflows/FSharpArcCapsule/script.fsx b/workflows/FSharpArcCapsule/script.fsx
index f4deb9029c503abfe59d9f87df893eb4225ecf59..155693f823fcdcccff9a5ac13dca26566792945d 100644
--- a/workflows/FSharpArcCapsule/script.fsx
+++ b/workflows/FSharpArcCapsule/script.fsx
@@ -1,17 +1,15 @@
#r "nuget: FSharp.Data, 5.0.2"
open FSharp.Data
+open System.IO
-
-let args : string array = fsi.CommandLineArgs |> Array.tail
-let first = args.[0]
-let second = args.[1]
+printfn "%A" (System.IO.Directory.GetCurrentDirectory())
let data =
CsvFile
- .Load(first)
+ .Load(Path.Combine(System.IO.Directory.GetCurrentDirectory(),"./arc/assays/measurement1/dataset/table.csv"))
.Cache()
-
+
let r =
[
yield "Sum_1-2"
@@ -19,4 +17,4 @@ let r =
yield sprintf "%f" ((row.["value_1"].AsFloat()) + (row.["value_2"].AsFloat()))
]
-System.IO.File.WriteAllLines(second,r)
\ No newline at end of file
+System.IO.File.WriteAllLines("./arc/runs/fsResult1/result.csv",r)
\ No newline at end of file