From 4c8ce34ca5d11b962135f01dfd1bdc0c27bdb18f Mon Sep 17 00:00:00 2001
From: Caroline Ott <caroline.ott1994@gmail.com>
Date: Mon, 2 Jun 2025 16:33:42 +0200
Subject: [PATCH] add run and wf .xlsx for metadata info to fixed script
---
runs/FixedScriptResult/run.xlsx | Bin 0 -> 3634 bytes
runs/FixedScriptResult/run.yml | 22 --------------
workflows/FixedScript/workflow.cwl | 44 +---------------------------
workflows/FixedScript/workflow.xlsx | Bin 0 -> 2317 bytes
4 files changed, 1 insertion(+), 65 deletions(-)
create mode 100644 runs/FixedScriptResult/run.xlsx
create mode 100644 workflows/FixedScript/workflow.xlsx
diff --git a/runs/FixedScriptResult/run.xlsx b/runs/FixedScriptResult/run.xlsx
new file mode 100644
index 0000000000000000000000000000000000000000..da53ddba84a0c9dbb7bc8701b709767716e9aaa3
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diff --git a/runs/FixedScriptResult/run.yml b/runs/FixedScriptResult/run.yml
index f839e49..609f396 100644
--- a/runs/FixedScriptResult/run.yml
+++ b/runs/FixedScriptResult/run.yml
@@ -2,25 +2,3 @@ firstArg:
class: File
path: ../../assays/measurement1/dataset/proteomics_result.csv
secondArg: ./result.csv
-
-arc:performer:
- - class: arc:Person
- arc:first name: "Caroline"
- arc:last name: "Ott"
- arc:email: "caroline.ott@rptu.de"
- arc:affiliation: "Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau"
-
-arc:has process sequence:
- - class: arc:process
- arc:has input:
- - class: arc:data
- arc:name: "./arc/assays/measurement1/dataset/table.csv"
- arc:has output:
- - class: arc:data
- arc:name: "./arc/runs/ARCMountResult/result.csv"
-
-$namespaces:
- arc: https://github.com/nfdi4plants/ARC_ontology
-
-$schemas:
- - https://raw.githubusercontent.com/nfdi4plants/ARC_ontology/main/ARC_v2.0.owl
diff --git a/workflows/FixedScript/workflow.cwl b/workflows/FixedScript/workflow.cwl
index 77e9751..a8b1a5a 100644
--- a/workflows/FixedScript/workflow.cwl
+++ b/workflows/FixedScript/workflow.cwl
@@ -30,46 +30,4 @@ outputs:
output:
type: File
outputBinding:
- glob: "*.csv"
-
-arc:has technology type:
- - class: arc:technology type
- arc:annotation value: "Docker Image"
-
-arc:technology platform: ".NET"
-
-arc:performer:
- - class: arc:Person
- arc:first name: "Timo"
- arc:last name: "Mühlhaus"
- arc:email: "muehlhaus@bio.uni-kl.de"
- arc:affiliation: "Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau"
- arc:has role:
- - class: arc:role
- arc:term accession: "https://credit.niso.org/contributor-roles/formal-analysis/"
- arc:annotation value: "Formal analysis"
-
-arc:has process sequence:
- - class: arc:process
- arc:name: "Data Transformation"
- arc:has parameter value:
- - class: arc:process parameter value
- arc:has parameter:
- - class: arc:protocol parameter
- arc:has parameter name:
- - class: arc:parameter name
- arc:term accession: "http://purl.obolibrary.org/obo/NCIT_C43582"
- arc:term source REF: "NCIT"
- arc:annotation value: "Data Transformation"
- arc:value:
- - class: arc:ontology annotation
- arc:term accession: "http://purl.obolibrary.org/obo/NCIT_C64911"
- arc:term source REF: "NCIT"
- arc:annotation value: "Addition"
-
-
-$namespaces:
- arc: https://github.com/nfdi4plants/ARC_ontology
-
-$schemas:
- - https://raw.githubusercontent.com/nfdi4plants/ARC_ontology/main/ARC_v2.0.owl
\ No newline at end of file
+ glob: "*.csv"
\ No newline at end of file
diff --git a/workflows/FixedScript/workflow.xlsx b/workflows/FixedScript/workflow.xlsx
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--
GitLab