diff --git a/runs/README.md b/runs/README.md new file mode 100644 index 0000000000000000000000000000000000000000..58da9f3b679d2bda07b2da466cd943cdba3876da --- /dev/null +++ b/runs/README.md @@ -0,0 +1,28 @@ + +# CWL examples + +:bulb: Requires installation of a CWL runner and docker +checkout CWL guides in the [DataPLANT Knowledge Base](https://nfdi4plants.org/nfdi4plants.knowledgebase/docs/guides/ComputationalWorkflows/index.html) + +All three workflow examples below (re)create the file [fsResult1/result.csv](fsResult1/result.csv). + +## with a docker container + +```bash +cd runs/fsResult1 +cwltool ../../workflows/FixedScript/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml +``` + +## With a fixed script in a mounted arc + +```bash +cd runs/fsResult1 +cwltool ../../workflows/ARCMount/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml +``` + +## Within an ARC with a devcontainer + +```bash +cd runs/fsResult1 +cwltool ../../workflows/Devcontainer/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml +```