diff --git a/runs/README.md b/runs/README.md index 2369b437f4b99e31c578d3c9c54cabbc2a418275..58da9f3b679d2bda07b2da466cd943cdba3876da 100644 --- a/runs/README.md +++ b/runs/README.md @@ -1,13 +1,28 @@ -# CWL example with a docker container +# CWL examples :bulb: Requires installation of a CWL runner and docker checkout CWL guides in the [DataPLANT Knowledge Base](https://nfdi4plants.org/nfdi4plants.knowledgebase/docs/guides/ComputationalWorkflows/index.html) +All three workflow examples below (re)create the file [fsResult1/result.csv](fsResult1/result.csv). + +## with a docker container + ```bash cd runs/fsResult1 - cwltool ../../workflows/FixedScript/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml ``` -This workflow creates the file [fsResult1/result.csv](fsResult1/result.csv). +## With a fixed script in a mounted arc + +```bash +cd runs/fsResult1 +cwltool ../../workflows/ARCMount/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml +``` + +## Within an ARC with a devcontainer + +```bash +cd runs/fsResult1 +cwltool ../../workflows/Devcontainer/FSharpArcCapsule.cwl ../FSharpArcCapsule.yml +```