diff --git a/.gitattributes b/.gitattributes index bb35740ea3e6d48fcf354cb75d45ebb04cce1963..eeba4f591a848fd3c835a13b9dbac9747b10fa9e 100644 --- a/.gitattributes +++ b/.gitattributes @@ -13,15 +13,6 @@ assays/S4_A2_Purification[[:space:]]of[[:space:]]H-Pab1-MLLE[[:space:]]for[[:spa assays/S4_A3_Size[[:space:]]exclusion[[:space:]]chromotography[[:space:]]of[[:space:]]H-Pab1-MLLE/dataset/Size[[:space:]]exclusion[[:space:]]chromotography[[:space:]]of[[:space:]]H-Pab1-MLLE[[:space:]](P4794).xlsx filter=lfs diff=lfs merge=lfs -text assays/S4_A5_X-ray[[:space:]]structure[[:space:]]analysis[[:space:]]of[[:space:]]H-Pab1-MLLE/dataset/Pab1_MLLE[[:space:]]-[[:space:]]Upa1_PAM2.mtz filter=lfs diff=lfs merge=lfs -text assays/S5_A2_Protein[[:space:]]structure[[:space:]]prediction[[:space:]]using[[:space:]]Alphafold2/dataset/UMAG_15064_Vps8_Alphafold[[:space:]]predicted[[:space:]]model.pdb filter=lfs diff=lfs merge=lfs -text -assays/S6_A2_Protein[[:space:]]structure[[:space:]]prediction[[:space:]]of[[:space:]]MKRN1[[:space:]]using[[:space:]]Alphafold2/dataset/Human[[:space:]]and[[:space:]]U.maydis[[:space:]]Mkrn1_Alphafold2[[:space:]]predicted[[:space:]]model.pse filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]U.maydis[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.S8B)/Pab1MLLE[[:space:]]Bait-Ladder,[[:space:]]4296,[[:space:]]4297,[[:space:]]4298,[[:space:]]0134,[[:space:]]132,[[:space:]]224_Super1.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]U.maydis[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.S8B)/Rrm4MLLE3[[:space:]]Bait-Ladder,[[:space:]]4296,[[:space:]]4297,[[:space:]]4298,[[:space:]]0134,[[:space:]]132,[[:space:]]224_Super1.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]U.maydis[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.S8B)/V_Pab1MLLE[[:space:]]Bait-Ladder,[[:space:]]4296,[[:space:]]4297,[[:space:]]4298,[[:space:]]0134,[[:space:]]132,[[:space:]]224_Super1.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]U.maydis[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.S8B)/V_Rrm4MLLE3[[:space:]]Bait-Ladder,[[:space:]]4296,[[:space:]]4297,[[:space:]]4298,[[:space:]]0134,[[:space:]]132,[[:space:]]224_Super1.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]human[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.6D)/HsPab1_bait,[[:space:]]Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]human[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.6D)/HsUbr5MLLE_bait,[[:space:]]Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]human[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.6D)/V_HsPab1_bait,[[:space:]]Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif filter=lfs diff=lfs merge=lfs -text -assays/S6_A3_Western[[:space:]]blot[[:space:]]analysis[[:space:]]of[[:space:]]GST[[:space:]]pull-down[[:space:]]experiments[[:space:]]using[[:space:]]human[[:space:]]PAM2L[[:space:]]variants/dataset/Western[[:space:]]blot[[:space:]]analysis[[:space:]]using[[:space:]]human[[:space:]]G-MLLE[[:space:]]variants[[:space:]]vs[[:space:]]Mkrn1[[:space:]]PAM2L[[:space:]]variants[[:space:]](Fig.6D)/V_HsUbr5MLLE_bait,[[:space:]]Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif filter=lfs diff=lfs merge=lfs -text assays/S3_A1_Hyphal[[:space:]]growth[[:space:]]of[[:space:]]strains[[:space:]]expressing[[:space:]]Rrm4-Kat[[:space:]]with[[:space:]]MLLE3[[:space:]]variants[[:space:]]in[[:space:]]AB33[[:space:]]background/dataset/1.[[:space:]]Replicate/UL167/1/BF-DIC.tif filter=lfs diff=lfs merge=lfs -text assays/S3_A1_Hyphal[[:space:]]growth[[:space:]]of[[:space:]]strains[[:space:]]expressing[[:space:]]Rrm4-Kat[[:space:]]with[[:space:]]MLLE3[[:space:]]variants[[:space:]]in[[:space:]]AB33[[:space:]]background/dataset/1.[[:space:]]Replicate/UL167/1/Laser488.tif filter=lfs diff=lfs merge=lfs -text assays/S3_A1_Hyphal[[:space:]]growth[[:space:]]of[[:space:]]strains[[:space:]]expressing[[:space:]]Rrm4-Kat[[:space:]]with[[:space:]]MLLE3[[:space:]]variants[[:space:]]in[[:space:]]AB33[[:space:]]background/dataset/1.[[:space:]]Replicate/UL167/1/X1_Laser488.stk filter=lfs diff=lfs merge=lfs -text diff --git a/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md b/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md similarity index 100% rename from assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md rename to assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md diff --git a/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep b/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep similarity index 100% rename from assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep rename to assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep diff --git a/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd b/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd similarity index 100% rename from assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd rename 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variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Pab1MLLE Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif diff --git a/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif b/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif similarity index 100% rename from assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif rename to 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blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif rename to assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif diff --git a/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif b/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif 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