From 5ca427179423e028e73346cbd298f2d5b6cad1e1 Mon Sep 17 00:00:00 2001
From: Senthil-Kumar Devan <devan@hhu.de>
Date: Thu, 9 Jan 2025 10:16:03 +0100
Subject: [PATCH] Assasy of S6 changed to S7
---
.../README.md | 0
.../dataset/.gitkeep | 0
.../dataset/Mkrn1 orthologs for MSA v10.dnd | 0
.../dataset/Mkrn1 orthologs for MSA v10.msf | 0
.../dataset/Mkrn1 orthologs for MSA v10.pdf | Bin
.../dataset/Mkrn1 orthologs for MSA v10.txt | 0
.../isa.assay.xlsx | Bin 6926 -> 6927 bytes
.../protocols/.gitkeep | 0
.../README.md | 0
.../dataset/.gitkeep | 0
.../HUman MKRN1_AF-Q9UHC7-F1-model_v4.pdb | 0
...aydis Mkrn1_Alphafold2 predicted model.pse | 0
...1_UMAG_12122_AF-A0A0D1E4Z6-F1-model_v4.pdb | 0
.../isa.assay.xlsx | Bin 6933 -> 6934 bytes
.../protocols/.gitkeep | 0
.../README.md | 0
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...296, 4297, 4298, 0134, 132, 224_Super1.tif | 0
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...296, 4297, 4298, 0134, 132, 224_Super1.tif | 0
...2,0123,0146,0133,0205,0124,0308_super4.tif | 0
...2,0123,0146,0133,0205,0124,0308_super1.tif | 0
...2,0123,0146,0133,0205,0124,0308_super4.tif | 0
...2,0123,0146,0133,0205,0124,0308_super1.tif | 0
.../isa.assay.xlsx | Bin 6948 -> 6949 bytes
.../protocols/.gitkeep | 0
27 files changed, 0 insertions(+), 0 deletions(-)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/README.md (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/dataset/.gitkeep (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/dataset/Mkrn1 orthologs for MSA v10.dnd (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/dataset/Mkrn1 orthologs for MSA v10.msf (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/dataset/Mkrn1 orthologs for MSA v10.pdf (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/dataset/Mkrn1 orthologs for MSA v10.txt (100%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/isa.assay.xlsx (63%)
rename assays/{S6_A1_Multiple sequence alignment of Mkrn1 orthologs => S7_A1_Multiple sequence alignment of Mkrn1 orthologs}/protocols/.gitkeep (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/README.md (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/dataset/.gitkeep (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/dataset/HUman MKRN1_AF-Q9UHC7-F1-model_v4.pdb (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/dataset/Human and U.maydis Mkrn1_Alphafold2 predicted model.pse (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/dataset/U.maydis Mkr1_UMAG_12122_AF-A0A0D1E4Z6-F1-model_v4.pdb (100%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/isa.assay.xlsx (63%)
rename assays/{S6_A2_Protein structure prediction of MKRN1 using Alphafold2 => S7_A2_Protein structure prediction of MKRN1 using Alphafold2}/protocols/.gitkeep (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/README.md (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/.gitkeep (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Pab1MLLE Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/V_Pab1MLLE Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/V_Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/V_HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/V_HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif (100%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/isa.assay.xlsx (63%)
rename assays/{S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants => S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants}/protocols/.gitkeep (100%)
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/README.md
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/.gitkeep
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.dnd
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.msf b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.msf
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.msf
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.msf
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.pdf b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.pdf
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.pdf
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.pdf
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.txt b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.txt
similarity index 100%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.txt
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/dataset/Mkrn1 orthologs for MSA v10.txt
diff --git a/assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/isa.assay.xlsx b/assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/isa.assay.xlsx
similarity index 63%
rename from assays/S6_A1_Multiple sequence alignment of Mkrn1 orthologs/isa.assay.xlsx
rename to assays/S7_A1_Multiple sequence alignment of Mkrn1 orthologs/isa.assay.xlsx
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diff --git a/assays/S6_A2_Protein structure prediction of MKRN1 using Alphafold2/README.md b/assays/S7_A2_Protein structure prediction of MKRN1 using Alphafold2/README.md
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diff --git a/assays/S6_A2_Protein structure prediction of MKRN1 using Alphafold2/dataset/U.maydis Mkr1_UMAG_12122_AF-A0A0D1E4Z6-F1-model_v4.pdb b/assays/S7_A2_Protein structure prediction of MKRN1 using Alphafold2/dataset/U.maydis Mkr1_UMAG_12122_AF-A0A0D1E4Z6-F1-model_v4.pdb
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rename to assays/S7_A2_Protein structure prediction of MKRN1 using Alphafold2/dataset/U.maydis Mkr1_UMAG_12122_AF-A0A0D1E4Z6-F1-model_v4.pdb
diff --git a/assays/S6_A2_Protein structure prediction of MKRN1 using Alphafold2/isa.assay.xlsx b/assays/S7_A2_Protein structure prediction of MKRN1 using Alphafold2/isa.assay.xlsx
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/README.md b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/README.md
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/.gitkeep b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/.gitkeep
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Pab1MLLE Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Pab1MLLE Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using U.maydis G-MLLE variants vs Mkrn1 PAM2L variants (Fig.S8B)/Rrm4MLLE3 Bait-Ladder, 4296, 4297, 4298, 0134, 132, 224_Super1.tif
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/HsUbr5MLLE_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super1.tif
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diff --git a/assays/S6_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/V_HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif b/assays/S7_A3_Western blot analysis of GST pull-down experiments using human PAM2L variants/dataset/Western blot analysis using human G-MLLE variants vs Mkrn1 PAM2L variants (Fig.6D)/V_HsPab1_bait, Prey-0162,0123,0146,0133,0205,0124,0308_super4.tif
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