From 90b3b7636c1bdff7bcec2e42c72bed593faf1799 Mon Sep 17 00:00:00 2001
From: Senthil-Kumar Devan <devan@hhu.de>
Date: Thu, 9 Jan 2025 09:34:30 +0000
Subject: [PATCH] S5 A1-3 changed to S6 A1-3

---
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 .../dataset/.gitkeep                                |   0
 .../UMAG_10620 and orthologs seq v11.msf            |   0
 .../UMAG_10620 and orthologs seq v11.pdf            | Bin
 .../UMAG_10620 and orthologs seq v11.txt            |   0
 .../dataset/vps8 sequence/Vps8 seq for MSA v4.msf   |   0
 .../dataset/vps8 sequence/Vps8 seq for MSA v4.pdf   | Bin
 .../dataset/vps8 sequence/Vps8 seq for MSA v4.txt   |   0
 .../isa.assay.xlsx                                  | Bin
 .../protocols/.gitkeep                              |   0
 .../README.md                                       |   0
 .../dataset/.gitkeep                                |   0
 .../UMAG_10620_Taf7_Alphafold predicted model.pdb   |   0
 .../UMAG_12183_Upa1_Alphafold predicted model.pdb   |   0
 .../UMAG_15064_Vps8_Alphafold predicted model.pdb   |   0
 .../isa.assay.xlsx                                  | Bin
 .../protocols/.gitkeep                              |   0
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 ...225,0226,0224,0310,304_bait0130_MLLE3_super2.png | Bin
 ...225,0226,0224,0310,304_bait0130_MLLE3_super2.png | Bin
 .../isa.assay.xlsx                                  | Bin
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 25 files changed, 0 insertions(+), 0 deletions(-)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/README.md (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/.gitkeep (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.msf (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.pdf (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.txt (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/vps8 sequence/Vps8 seq for MSA v4.msf (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/vps8 sequence/Vps8 seq for MSA v4.pdf (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/dataset/vps8 sequence/Vps8 seq for MSA v4.txt (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/isa.assay.xlsx (100%)
 rename assays/{S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs => S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs}/protocols/.gitkeep (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/README.md (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/dataset/.gitkeep (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/dataset/UMAG_10620_Taf7_Alphafold predicted model.pdb (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/dataset/UMAG_12183_Upa1_Alphafold predicted model.pdb (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/dataset/UMAG_15064_Vps8_Alphafold predicted model.pdb (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/isa.assay.xlsx (100%)
 rename assays/{S5_A2_Protein structure prediction using Alphafold2 => S6_A2_Protein structure prediction using Alphafold2}/protocols/.gitkeep (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/README.md (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/dataset/.gitkeep (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Blot.png (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Image of ladder.png (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_V_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/isa.assay.xlsx (100%)
 rename assays/{S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants => S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants}/protocols/.gitkeep (100%)

diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/README.md b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/README.md
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rename to assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/README.md
diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/.gitkeep b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/.gitkeep
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.msf b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.msf
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rename from assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.msf
rename to assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.msf
diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.pdf b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.pdf
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.txt b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/Taf7 sequence/UMAG_10620 and orthologs seq v11.txt
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.msf b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.msf
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.pdf b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.pdf
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.txt b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/dataset/vps8 sequence/Vps8 seq for MSA v4.txt
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/isa.assay.xlsx b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/isa.assay.xlsx
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diff --git a/assays/S5_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/protocols/.gitkeep b/assays/S6_A1_Multiple Sequence alignment of vps8 and Taf7 orthologs/protocols/.gitkeep
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/README.md b/assays/S6_A2_Protein structure prediction using Alphafold2/README.md
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/dataset/.gitkeep b/assays/S6_A2_Protein structure prediction using Alphafold2/dataset/.gitkeep
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/dataset/UMAG_10620_Taf7_Alphafold predicted model.pdb b/assays/S6_A2_Protein structure prediction using Alphafold2/dataset/UMAG_10620_Taf7_Alphafold predicted model.pdb
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/dataset/UMAG_12183_Upa1_Alphafold predicted model.pdb b/assays/S6_A2_Protein structure prediction using Alphafold2/dataset/UMAG_12183_Upa1_Alphafold predicted model.pdb
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/dataset/UMAG_15064_Vps8_Alphafold predicted model.pdb b/assays/S6_A2_Protein structure prediction using Alphafold2/dataset/UMAG_15064_Vps8_Alphafold predicted model.pdb
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/isa.assay.xlsx b/assays/S6_A2_Protein structure prediction using Alphafold2/isa.assay.xlsx
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diff --git a/assays/S5_A2_Protein structure prediction using Alphafold2/protocols/.gitkeep b/assays/S6_A2_Protein structure prediction using Alphafold2/protocols/.gitkeep
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/README.md b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/README.md
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/.gitkeep b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/.gitkeep
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Blot.png b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Blot.png
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Image of ladder.png b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Pab1-MLLE vs Predicted PAM2L (Fig.S5D)/FigS5D_Image of ladder.png
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png
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rename from assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png
rename to assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png
diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_V_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_V_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png
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rename to assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/dataset/G-Rrm4-MLLE3 vs Predicted PAM2L (Fig.5C)/Fig5_C_V_Ladder,4296,4297,4298,0225,0226,0224,0310,304_bait0130_MLLE3_super2.png
diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/isa.assay.xlsx b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/isa.assay.xlsx
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diff --git a/assays/S5_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/protocols/.gitkeep b/assays/S6_A3_Western blot analysis of GST pull-down experiments using predicted PAM2L variants/protocols/.gitkeep
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