From a94ac0dab90ead06125d3bb24cb86de58fafe665 Mon Sep 17 00:00:00 2001
From: Senthil-Kumar Devan <devan@hhu.de>
Date: Thu, 9 Jan 2025 09:23:04 +0000
Subject: [PATCH] Assasy S2 A3-5 changed to S3-A1-3
---
.../README.md | 0
.../dataset/.gitkeep | 0
...174, 0169, 0166, 0171, 0138_bait 0130_super3.png | Bin
...75, 0170, 0167, 0172, 0139_ 0130 bait_4super.png | Bin
...174, 0169, 0166, 0171, 0138_bait 0130_super3.png | Bin
...75, 0170, 0167, 0172, 0139_ 0130 bait_4super.png | Bin
.../isa.assay.xlsx | Bin
.../protocols/.gitkeep | 0
.../README.md | 0
.../dataset/.gitkeep | 0
.../dataset/RiM3-UmPL2 surface v1.pse | 0
..._001_alphafold2_multimer_v3_model_4_seed_000.pdb | 0
.../dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb | 0
.../dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb | 0
.../isa.assay.xlsx | Bin
.../protocols/.gitkeep | 0
.../README.md | 0
.../dataset/.gitkeep | 0
...), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif | 0
...), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif | 0
.../isa.assay.xlsx | Bin
.../protocols/.gitkeep | 0
22 files changed, 0 insertions(+), 0 deletions(-)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/README.md (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/dataset/.gitkeep (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/dataset/FigS2_C_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/dataset/FigS2_C_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/dataset/FigS2_C_V_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/dataset/FigS2_C_V_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/isa.assay.xlsx (100%)
rename assays/{S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants => S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants}/protocols/.gitkeep (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/README.md (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/dataset/.gitkeep (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/dataset/RiM3-UmPL2 surface v1.pse (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/dataset/RiMLLE3UmUp1PL2_66f71_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/isa.assay.xlsx (100%)
rename assays/{S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis => S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis}/protocols/.gitkeep (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/README.md (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/dataset/.gitkeep (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/dataset/20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/dataset/V_20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/isa.assay.xlsx (100%)
rename assays/{S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis => S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis}/protocols/.gitkeep (100%)
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/README.md b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/README.md
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/README.md
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/README.md
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/.gitkeep b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/.gitkeep
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/.gitkeep
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/.gitkeep
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4297, 0174, 0169, 0166, 0171, 0138_bait 0130_super3.png
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/dataset/FigS2_C_V_Ladder, 4296, 4298, 0175, 0170, 0167, 0172, 0139_ 0130 bait_4super.png
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/isa.assay.xlsx b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/isa.assay.xlsx
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/isa.assay.xlsx
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/isa.assay.xlsx
diff --git a/assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/protocols/.gitkeep b/assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/protocols/.gitkeep
similarity index 100%
rename from assays/S2_A3_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/protocols/.gitkeep
rename to assays/S3_A1_Western blot analysis of GST pull-down experiments with GST-MLLE3 and PAM2L variants/protocols/.gitkeep
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/README.md b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/README.md
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/README.md
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/README.md
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/.gitkeep b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/.gitkeep
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/.gitkeep
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/.gitkeep
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiM3-UmPL2 surface v1.pse b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiM3-UmPL2 surface v1.pse
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiM3-UmPL2 surface v1.pse
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiM3-UmPL2 surface v1.pse
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiMLLE3UmUp1PL2_66f71_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiMLLE3UmUp1PL2_66f71_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiMLLE3UmUp1PL2_66f71_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/RiMLLE3UmUp1PL2_66f71_unrelaxed_rank_001_alphafold2_multimer_v3_model_4_seed_000.pdb
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L1.pdb
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/dataset/Rrm4_MLLE3 - Upa1_PAM2L2.pdb
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/isa.assay.xlsx b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/isa.assay.xlsx
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/isa.assay.xlsx
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/isa.assay.xlsx
diff --git a/assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/protocols/.gitkeep b/assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/protocols/.gitkeep
similarity index 100%
rename from assays/S2_A4_Structural comparison of MLLE3 in U_maydis and R_irregularis/protocols/.gitkeep
rename to assays/S3_A2_Structural comparison of MLLE3 in U_maydis and R_irregularis/protocols/.gitkeep
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/README.md b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/README.md
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/README.md
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/README.md
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/.gitkeep b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/.gitkeep
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/.gitkeep
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/.gitkeep
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/V_20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/V_20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/V_20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/dataset/V_20231211_Ladder, BaitP351(PreyP4296, P4297,P4298), BaitP0130(PreyP4296, P4297,P4298)_super-1.tif
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/isa.assay.xlsx b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/isa.assay.xlsx
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/isa.assay.xlsx
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/isa.assay.xlsx
diff --git a/assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/protocols/.gitkeep b/assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/protocols/.gitkeep
similarity index 100%
rename from assays/S2_A5_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/protocols/.gitkeep
rename to assays/S3_A3_Western blot analyis of Rrm4-MLLE3 from U_maydis and R_irregularis/protocols/.gitkeep
--
GitLab