diff --git a/assays/Biolector_AK60/README.md b/assays/S1_A1_Biolector_run/README.md
similarity index 100%
rename from assays/Biolector_AK60/README.md
rename to assays/S1_A1_Biolector_run/README.md
diff --git a/assays/Biolector_AK60/dataset/.gitkeep b/assays/S1_A1_Biolector_run/dataset/.gitkeep
similarity index 100%
rename from assays/Biolector_AK60/dataset/.gitkeep
rename to assays/S1_A1_Biolector_run/dataset/.gitkeep
diff --git a/assays/Biolector_AK60/dataset/20210302_BiolectorAK60.pzfx b/assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60.pzfx
similarity index 100%
rename from assays/Biolector_AK60/dataset/20210302_BiolectorAK60.pzfx
rename to assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60.pzfx
diff --git a/assays/Biolector_AK60/dataset/20210302_BiolectorAK60_Raw.csv b/assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60_Raw.csv
similarity index 100%
rename from assays/Biolector_AK60/dataset/20210302_BiolectorAK60_Raw.csv
rename to assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60_Raw.csv
diff --git a/assays/Biolector_AK60/dataset/20210302_BiolectorAK60_TRANSFORM_2nd.csv b/assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60_TRANSFORM_2nd.csv
similarity index 100%
rename from assays/Biolector_AK60/dataset/20210302_BiolectorAK60_TRANSFORM_2nd.csv
rename to assays/S1_A1_Biolector_run/dataset/20210302_BiolectorAK60_TRANSFORM_2nd.csv
diff --git a/assays/Biolector_AK60/isa.assay.xlsx b/assays/S1_A1_Biolector_run/isa.assay.xlsx
similarity index 64%
rename from assays/Biolector_AK60/isa.assay.xlsx
rename to assays/S1_A1_Biolector_run/isa.assay.xlsx
index 7ee0bfa66e8ba132ee83b4df855711076eb0d033..a86547696bb2837bfad5c3058ca6793d6eba2147 100644
Binary files a/assays/Biolector_AK60/isa.assay.xlsx and b/assays/S1_A1_Biolector_run/isa.assay.xlsx differ
diff --git a/assays/Biolector_AK60/protocols/.gitkeep b/assays/S1_A1_Biolector_run/protocols/.gitkeep
similarity index 100%
rename from assays/Biolector_AK60/protocols/.gitkeep
rename to assays/S1_A1_Biolector_run/protocols/.gitkeep
diff --git a/assays/Biolector_AK60/protocols/20210302_BiolectorAK60.docx b/assays/S1_A1_Biolector_run/protocols/20210302_BiolectorAK60.docx
similarity index 100%
rename from assays/Biolector_AK60/protocols/20210302_BiolectorAK60.docx
rename to assays/S1_A1_Biolector_run/protocols/20210302_BiolectorAK60.docx
diff --git a/studies/Growth_conditions_biolector/isa.study.xlsx b/studies/Growth_conditions_biolector/isa.study.xlsx
deleted file mode 100644
index 0bbf16a4d516b5ac98d3474183571bdffc70e48f..0000000000000000000000000000000000000000
Binary files a/studies/Growth_conditions_biolector/isa.study.xlsx and /dev/null differ
diff --git a/studies/Growth_conditions_biolector/README.md b/studies/S1_Growth_conditions_biolector/README.md
similarity index 100%
rename from studies/Growth_conditions_biolector/README.md
rename to studies/S1_Growth_conditions_biolector/README.md
diff --git a/studies/S1_Growth_conditions_biolector/isa.study.xlsx b/studies/S1_Growth_conditions_biolector/isa.study.xlsx
new file mode 100644
index 0000000000000000000000000000000000000000..5d4d9f139d58035985096cf6fdc27f783e4cccd0
Binary files /dev/null and b/studies/S1_Growth_conditions_biolector/isa.study.xlsx differ
diff --git a/studies/Growth_conditions_biolector/protocols/.gitkeep b/studies/S1_Growth_conditions_biolector/protocols/.gitkeep
similarity index 100%
rename from studies/Growth_conditions_biolector/protocols/.gitkeep
rename to studies/S1_Growth_conditions_biolector/protocols/.gitkeep
diff --git a/studies/Growth_conditions_biolector/protocols/20210302_BiolectorAK60.docx b/studies/S1_Growth_conditions_biolector/protocols/20210302_BiolectorAK60.docx
similarity index 100%
rename from studies/Growth_conditions_biolector/protocols/20210302_BiolectorAK60.docx
rename to studies/S1_Growth_conditions_biolector/protocols/20210302_BiolectorAK60.docx
diff --git a/studies/Growth_conditions_biolector/protocols/Bacterial strains and growth conditions.md b/studies/S1_Growth_conditions_biolector/protocols/Bacterial strains and growth conditions.md
similarity index 100%
rename from studies/Growth_conditions_biolector/protocols/Bacterial strains and growth conditions.md
rename to studies/S1_Growth_conditions_biolector/protocols/Bacterial strains and growth conditions.md
diff --git a/studies/Growth_conditions_biolector/resources/.gitkeep b/studies/S1_Growth_conditions_biolector/resources/.gitkeep
similarity index 100%
rename from studies/Growth_conditions_biolector/resources/.gitkeep
rename to studies/S1_Growth_conditions_biolector/resources/.gitkeep
diff --git a/studies/Growth_conditions_microarray/README.md b/studies/S2_Growth_conditions_microarray/README.md
similarity index 100%
rename from studies/Growth_conditions_microarray/README.md
rename to studies/S2_Growth_conditions_microarray/README.md
diff --git a/studies/Growth_conditions_microarray/isa.study.xlsx b/studies/S2_Growth_conditions_microarray/isa.study.xlsx
similarity index 54%
rename from studies/Growth_conditions_microarray/isa.study.xlsx
rename to studies/S2_Growth_conditions_microarray/isa.study.xlsx
index c6627c7b042b9d2223efd27747dee82bf986505e..4929e39e85cedeba253bc3b47600c99738d1e028 100644
Binary files a/studies/Growth_conditions_microarray/isa.study.xlsx and b/studies/S2_Growth_conditions_microarray/isa.study.xlsx differ
diff --git a/studies/Growth_conditions_microarray/protocols/.gitkeep b/studies/S2_Growth_conditions_microarray/protocols/.gitkeep
similarity index 100%
rename from studies/Growth_conditions_microarray/protocols/.gitkeep
rename to studies/S2_Growth_conditions_microarray/protocols/.gitkeep
diff --git "a/studies/Growth_conditions_microarray/protocols/kr\303\274ger-et-al-2019-impact-of-co2-hco3-availability-on-anaplerotic-flux-in-pyruvate-dehydrogenase-complex-deficient.pdf" "b/studies/S2_Growth_conditions_microarray/protocols/kr\303\274ger-et-al-2019-impact-of-co2-hco3-availability-on-anaplerotic-flux-in-pyruvate-dehydrogenase-complex-deficient.pdf"
similarity index 100%
rename from "studies/Growth_conditions_microarray/protocols/kr\303\274ger-et-al-2019-impact-of-co2-hco3-availability-on-anaplerotic-flux-in-pyruvate-dehydrogenase-complex-deficient.pdf"
rename to "studies/S2_Growth_conditions_microarray/protocols/kr\303\274ger-et-al-2019-impact-of-co2-hco3-availability-on-anaplerotic-flux-in-pyruvate-dehydrogenase-complex-deficient.pdf"
diff --git a/studies/Growth_conditions_microarray/resources/.gitkeep b/studies/S2_Growth_conditions_microarray/resources/.gitkeep
similarity index 100%
rename from studies/Growth_conditions_microarray/resources/.gitkeep
rename to studies/S2_Growth_conditions_microarray/resources/.gitkeep