From 110173da1241712aab9aab7cb744dd0fc72e9547 Mon Sep 17 00:00:00 2001 From: Sabrina Zander <sabrina.zander@uni-duesseldorf.de> Date: Tue, 28 Jan 2025 11:15:44 +0100 Subject: [PATCH] add readme to assays --- README.md | 4 ++-- assays/S1_A1_microscopy_yeast/README.md | 2 ++ assays/S1_A2_microscopy_hyphae/README.md | 2 ++ assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md | 2 ++ assays/S2_A2_protein_expression/README.md | 2 ++ assays/S2_A3_microscopy_Rfp_Gfp/README.md | 2 ++ assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md | 2 ++ assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md | 2 ++ assays/S3_A1_microscopy_Khd4-Gfp/README.md | 2 ++ assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md | 2 ++ 10 files changed, 20 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index dcc23fc..90edd19 100644 --- a/README.md +++ b/README.md @@ -46,9 +46,9 @@ The [Assays (A)](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tr [S2_A1_microscopy_Rrm4_Ada_strains_DIC+Rrm4-GFP](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp) Figure S2C-F [S2_A2_protein_expression -](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A2_protein_expression) Figure S3 A-B +](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A2_protein_expression) Figure S3 A [S2_A3_microscopy_Rfp_Gfp -](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A3_microscopy_Rfp_Gfp) Figure S3 C +](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A3_microscopy_Rfp_Gfp) Figure S3 B-C [S2_A4_HyperTRIBE_Rrm4_analysis ](https://git.nfdi4plants.org/sankaran/Sankaranarayanan-2023/-/tree/master/assays/S2_A4_HyperTRIBE_Rrm4_analysis) Figure 2C, Figure S4 A-D [S2_A5_HyperTRIBE_Rrm4_iCLIP diff --git a/assays/S1_A1_microscopy_yeast/README.md b/assays/S1_A1_microscopy_yeast/README.md index e69de29..2c05b9b 100644 --- a/assays/S1_A1_microscopy_yeast/README.md +++ b/assays/S1_A1_microscopy_yeast/README.md @@ -0,0 +1,2 @@ +# S1_A1_microscopy_yeast +This assay includes the data of the microscopy experiment of the WT and khd4D yeast strain shown in Figure S1. \ No newline at end of file diff --git a/assays/S1_A2_microscopy_hyphae/README.md b/assays/S1_A2_microscopy_hyphae/README.md index e69de29..0a22384 100644 --- a/assays/S1_A2_microscopy_hyphae/README.md +++ b/assays/S1_A2_microscopy_hyphae/README.md @@ -0,0 +1,2 @@ +# S1_A2_microscopy_hyphae +This assay includes microscopy data and quantification of hyphae of the WT and khd4D strain shown in Figure 1. \ No newline at end of file diff --git a/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md b/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md index e69de29..877f696 100644 --- a/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md +++ b/assays/S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp/README.md @@ -0,0 +1,2 @@ +# S2_A1_microscopy_Rrm4-Ada_Rrm4-Gfp +This assay includes microscopy data and quantification of 2805 - pcr1:rrm4-ada-gfp (ip), 2807 - pcrg1:rrm4-gfp (ip), Rrm4-Gfp - prrm4: rrm4-Gfp strains shown in Figure S2C-F. \ No newline at end of file diff --git a/assays/S2_A2_protein_expression/README.md b/assays/S2_A2_protein_expression/README.md index e69de29..8f0d235 100644 --- a/assays/S2_A2_protein_expression/README.md +++ b/assays/S2_A2_protein_expression/README.md @@ -0,0 +1,2 @@ +# S2_A2_protein_expression +This assay includes western blot images of the Rrm4-hyperTRIBE constructs shown in Figure S3 A. \ No newline at end of file diff --git a/assays/S2_A3_microscopy_Rfp_Gfp/README.md b/assays/S2_A3_microscopy_Rfp_Gfp/README.md index e69de29..a55ff8a 100644 --- a/assays/S2_A3_microscopy_Rfp_Gfp/README.md +++ b/assays/S2_A3_microscopy_Rfp_Gfp/README.md @@ -0,0 +1,2 @@ +# S2_A3_microscopy_Rfp_Gfp +This assay includes flourescence measurement data and microscopic images of the Rrm4-hyperTRIBE constructs shown in Figure S3 B/C. \ No newline at end of file diff --git a/assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md index e69de29..52547fa 100644 --- a/assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md +++ b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md @@ -0,0 +1,2 @@ +# S2_A4_HyperTRIBE_Rrm4_analysis +This assay includes RNAseq files (raw/processed) and the script used for the analysis of the Rrm4-Ada-GFP constructs shown in Figure 2C and Figure S4 A-D \ No newline at end of file diff --git a/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md index e69de29..0bc05fa 100644 --- a/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md +++ b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md @@ -0,0 +1,2 @@ +# S2_A5_HyperTRIBE_Rrm4_iCLIP +This assay includes the script used for the analysis shown in Figure 2D and Figure S4 E-G diff --git a/assays/S3_A1_microscopy_Khd4-Gfp/README.md b/assays/S3_A1_microscopy_Khd4-Gfp/README.md index e69de29..da1505e 100644 --- a/assays/S3_A1_microscopy_Khd4-Gfp/README.md +++ b/assays/S3_A1_microscopy_Khd4-Gfp/README.md @@ -0,0 +1,2 @@ +# S3_A1_microscopy_Khd4-Gfp +This assay includes microscopy data and quantification of WT, khd4D, pcrg1:khd4-ada-gfp, pcrg1:khd4-gfp and pcrg1:mKate2-ada-gfp strain shown in Figure S5 C-E \ No newline at end of file diff --git a/assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md b/assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md index e69de29..0a9a4b5 100644 --- a/assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md +++ b/assays/S3_A2_Khd4-Ada-strains_protein_expression/README.md @@ -0,0 +1,2 @@ +# S3_A2_Khd4-Ada-strains_protein_expression +This assay includes includes western blot images of the Khd4-hyperTRIBE constructs shown in Figure S5 F-G \ No newline at end of file -- GitLab