diff --git a/.gitattributes b/.gitattributes
index edfe6ac1bfb8b4776e309ca1ad23b57230efa80a..9c4e7d2acd99cb919f3da23e665d111d4801bcb4 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -2692,12 +2692,22 @@ assays/S6_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/dataset/06[[:space:]]khd4_deleti
 assays/S6_A3_RNAseq_analysis_yeast_vs_hyphae/dataset/DESeq2_khd4D_Yevhy.html filter=lfs diff=lfs merge=lfs -text
 assays/S6_A3_RNAseq_analysis_yeast_vs_hyphae/dataset/DESeq2_wt_Yevhy.html filter=lfs diff=lfs merge=lfs -text
 assays/S6_A4_analysis_specific_targets/dataset/07[[:space:]]Khd4_regulates_subcellular_levels_of_membrane_trafficking_regulators.html filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Maximum-8.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z[[:space:]]Series-4.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z[[:space:]]Series-4_selected_stacks.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Maximum-2.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z[[:space:]]Series-3-1.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z[[:space:]]Series-3-1_seelcted.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Maximum-6.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z[[:space:]]Series-6.tif filter=lfs diff=lfs merge=lfs -text
-assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z[[:space:]]Series-6_selected_stacks.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy[[:space:]]of[[:space:]]Z[[:space:]]Series-4.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Maximum-6.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate-2.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Z[[:space:]]Series-4_worthchosing.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Maximum-4.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Rotate-2.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Z[[:space:]]Series.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Maximum.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Z[[:space:]]Series-1.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Maximum-8.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z[[:space:]]Series-4.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z[[:space:]]Series-4_selected_stacks.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Maximum-2.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z[[:space:]]Series-3-1.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z[[:space:]]Series-3-1_seelcted.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Maximum-6.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z[[:space:]]Series-6.tif filter=lfs diff=lfs merge=lfs -text
+assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z[[:space:]]Series-6_selected_stacks.tif filter=lfs diff=lfs merge=lfs -text
diff --git a/assays/S10_A1_microscopy_FM4-64/dataset/Readme.txt b/assays/S10_A1_microscopy_FM4-64/dataset/Readme.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d0608e2e067ab349e3999da3cb28276c0c90e4a
--- /dev/null
+++ b/assays/S10_A1_microscopy_FM4-64/dataset/Readme.txt
@@ -0,0 +1 @@
+Visiview, the imaging software, names images based on the last saved entry. If this isn’t updated, the name from a previous experiment may be applied to new files. As a result, the names of the z-stacks might not correspond correctly due to issues during the image capture process. However, please note that the incorrect naming does not affect the validity of the results.
\ No newline at end of file
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/Readme.txt b/assays/S10_A2_microscopy_CMAG/dataset/Readme.txt
new file mode 100644
index 0000000000000000000000000000000000000000..1d0608e2e067ab349e3999da3cb28276c0c90e4a
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/Readme.txt
@@ -0,0 +1 @@
+Visiview, the imaging software, names images based on the last saved entry. If this isn’t updated, the name from a previous experiment may be applied to new files. As a result, the names of the z-stacks might not correspond correctly due to issues during the image capture process. However, please note that the incorrect naming does not affect the validity of the results.
\ No newline at end of file
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Copy of Rotate.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Copy of Rotate.tif
new file mode 100644
index 0000000000000000000000000000000000000000..62799bd8928e80f7385c08ced5ea4a25f1455909
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Copy of Rotate.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate-2-new.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate-2-new.tif
new file mode 100644
index 0000000000000000000000000000000000000000..4dfbf8dc30bb01c6d5e3d43b5689e30f4cd80ead
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate-2-new.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate.tif
new file mode 100644
index 0000000000000000000000000000000000000000..4c7ed9e9fbe1707bf863becc331376f96bcbf95d
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Rotate.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Z Series-4.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Z Series-4.tif
new file mode 100644
index 0000000000000000000000000000000000000000..827bfbca11d612acdbef34f7440a90d64c3fd063
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Copy of Z Series-4.tif	
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5251b05b60a41cf24fb5fcfb51f5019d94e6fe9380396433d8bd286cfe924c41
+size 2793038
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Maximum-6.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Maximum-6.tif
new file mode 100644
index 0000000000000000000000000000000000000000..aaf04f354ee7300c85fb2b2eca1ed34ab0a49bf8
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Maximum-6.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4a92323703ac2d47e3c39c326cf55c091e41ad5d1679a40698d200a19b990c52
+size 2793018
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate-2.tif
new file mode 100644
index 0000000000000000000000000000000000000000..44c76b7637e9aba27873a6a2e409db03f1aded3c
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate-2.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:68b00880e455c2ef4036327bb7abdffdf2f61f3874325171c5547acba42b7a3c
+size 3597734
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate.tif
new file mode 100644
index 0000000000000000000000000000000000000000..fa7c5a0db192f591055dedbe78dfb17d8ffc9324
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Rotate.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2cbeaef3bb2839df1d89c8f8b228a7172262fe33130a3d552e59894550a355f8
+size 3301268
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Z Series-4_worthchosing.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Z Series-4_worthchosing.tif
new file mode 100644
index 0000000000000000000000000000000000000000..8118fcb4b6a771a9ced54a82afc0e2726dc6fb67
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/AB33/Z Series-4_worthchosing.tif	
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2db7feadc54e277b15323444ac53f3314730ffe48f02101cf3736f2c93d47d1a
+size 8378794
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2-2.tif
new file mode 100644
index 0000000000000000000000000000000000000000..5add75bf41d88dd48df24ffa765742824bb39655
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2-2.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2.tif
new file mode 100644
index 0000000000000000000000000000000000000000..e5ae286c5e85eba6dec8e2ce5dc9f8661bb73ee5
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Copy of Rotate-2.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Maximum-4.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Maximum-4.tif
new file mode 100644
index 0000000000000000000000000000000000000000..c8b045fc26efa90b2c779a9986f37659e07eb56a
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Maximum-4.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:70d84f7c52320c2ffbd10573756ebbdb6a3a08bf023b9f8f5fa4f52eee81b06b
+size 2793018
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Rotate-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Rotate-2.tif
new file mode 100644
index 0000000000000000000000000000000000000000..2459981a3c657e93c85b4da5a70eda7bfacc4435
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Rotate-2.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:69175380668126f08a50a84c3931a2b0ac871cdd6a90ab0168b7cf179e2348bf
+size 5696938
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Z Series.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Z Series.tif
new file mode 100644
index 0000000000000000000000000000000000000000..7db4ea9556031da114cf1ef85b9486907ebdca4a
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Did2D/Z Series.tif	
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7d305b8b2d5559851dff8d6952efde9ad2e693789cd11d74bb106be066c6bd9b
+size 8378754
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-3.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-3.tif
new file mode 100644
index 0000000000000000000000000000000000000000..f18a46f474580fed5309b3089d53522197cd2b0d
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-3.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-4new.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-4new.tif
new file mode 100644
index 0000000000000000000000000000000000000000..0b441489406a01b4a0c054b23f2339ff28e4fa57
Binary files /dev/null and b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Copy of Rotate-4new.tif differ
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Maximum.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Maximum.tif
new file mode 100644
index 0000000000000000000000000000000000000000..bc6578c8da90d5c7610a2900b8e1fb23f214fe63
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Maximum.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8ae155b8920aeb7e05a3fece292638786892d5ec756d4b8cc061b3ca6c78b0d0
+size 2793016
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Z Series-1.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Z Series-1.tif
new file mode 100644
index 0000000000000000000000000000000000000000..ff9500a21a4b24a448f9706cca495578dc995953
--- /dev/null
+++ b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/inverted_images/Khd4D/Z Series-1.tif	
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:85996e20df74a29e3e19984553f831bf1b378512885569b8f87029776b39a6aa
+size 8378760
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Copy of Rotate.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Copy of Rotate.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Copy of Rotate.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Copy of Rotate.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Maximum-8.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Maximum-8.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Maximum-8.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Maximum-8.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z Series-4.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z Series-4.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z Series-4.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z Series-4.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z Series-4_selected_stacks.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z Series-4_selected_stacks.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/AB33/Z Series-4_selected_stacks.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/AB33/Z Series-4_selected_stacks.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Copy of Rotate-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Copy of Rotate-2.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Copy of Rotate-2.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Copy of Rotate-2.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Maximum-2.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Maximum-2.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Maximum-2.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Maximum-2.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z Series-3-1.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z Series-3-1.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z Series-3-1.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z Series-3-1.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z Series-3-1_seelcted.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z Series-3-1_seelcted.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Did2D/Z Series-3-1_seelcted.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Did2D/Z Series-3-1_seelcted.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Copy of Rotate-3.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Copy of Rotate-3.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Copy of Rotate-3.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Copy of Rotate-3.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Maximum-6.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Maximum-6.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Maximum-6.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Maximum-6.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z Series-6.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z Series-6.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z Series-6.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z Series-6.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z Series-6_selected_stacks.tif b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z Series-6_selected_stacks.tif
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Khd4D/Z Series-6_selected_stacks.tif
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Khd4D/Z Series-6_selected_stacks.tif
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Linescan.pzfx b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Linescan.pzfx
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Linescan.pzfx
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Linescan.pzfx
diff --git a/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Linescan.xlsx b/assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Linescan.xlsx
similarity index 100%
rename from assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/Linescan.xlsx
rename to assays/S10_A2_microscopy_CMAG/dataset/microscopic_images_used_in_the_manuscript/pseudocolor_images/Linescan.xlsx