From 535de1da1fe52ef1a515596c90cc1796300c632b Mon Sep 17 00:00:00 2001
From: Sabrina Zander <sabrina.zander@uni-duesseldorf.de>
Date: Mon, 27 Jan 2025 11:17:45 +0000
Subject: [PATCH] rename Khd4 HyperTribe
---
.../README.md | 0
.../dataset/.gitkeep | 0
...acterization_of_Khd4_Ada_GFP_editing_events.html | 0
...racterization_of_Khd4_Ada_GFP_editing_events.qmd | 0
.../Khd4_Ada_Gfp_editing_5%_rep1.bedgraph | 0
.../Khd4_Ada_Gfp_editing_5%_rep2.bedgraph | 0
.../control_Ada_editing_5%_rep1.bedgraph | 0
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.../isa.assay.xlsx | Bin
.../protocols/.gitkeep | 0
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...tifies_highly_specific_mRNA_Targets_of_Khd4.html | 0
...ntifies_highly_specific_mRNA_Targets_of_Khd4.qmd | 0
...ting sites are proximal to the AUACCC motif.html | 0
...iting sites are proximal to the AUACCC motif.qmd | 0
...tif do not show enrichment for other motifs.html | 0
...otif do not show enrichment for other motifs.qmd | 0
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assays/{S5_A3_GO-term => S3_A5_GO-term}/README.md | 0
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rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/dataset/01 characterization_of_Khd4_Ada_GFP_editing_events.html (100%)
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rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/dataset/Editing_bedgraph_files/control_Ada_editing_5%_rep2.bedgraph (100%)
rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/dataset/RNAseq_rawfiles/Khd4-Ada-Gfp_rep1.fastq.gz (100%)
rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/dataset/RNAseq_rawfiles/Khd4-Ada-Gfp_rep2.fastq.gz (100%)
rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/dataset/RNAseq_rawfiles/Khd4-Gfp.fastq.gz (100%)
rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/isa.assay.xlsx (100%)
rename assays/{S5_A1_HyperTRIBE_Khd4_workflow => S3_A3_HyperTRIBE_Khd4_workflow}/protocols/.gitkeep (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/.Rhistory (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/README.md (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/dataset/.gitkeep (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/dataset/02 HyperTRIBE_identifies_highly_specific_mRNA_Targets_of_Khd4.html (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/dataset/02 HyperTRIBE_identifies_highly_specific_mRNA_Targets_of_Khd4.qmd (100%)
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rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/dataset/04 Khd4-Ada-Gfp edited transcripts lacking the AUACCC motif do not show enrichment for other motifs.html (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/dataset/04 Khd4-Ada-Gfp edited transcripts lacking the AUACCC motif do not show enrichment for other motifs.qmd (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/isa.assay.xlsx (100%)
rename assays/{S5_A2_HyperTRIBE_motif_analysis => S3_A4_HyperTRIBE_motif_analysis}/protocols/.gitkeep (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/README.md (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/.gitkeep (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/05 Khd4-bound mRNAs are enriched for regulatory proteins.html (100%)
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rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/Umaydis_GOterm_annotation.gmt (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/cytoscape_network_GOterm.cys (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/gProfiler_GO_term_Khd4_bound_mRNA.csv (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt (100%)
rename assays/{S5_A3_GO-term => S3_A5_GO-term}/isa.assay.xlsx (100%)
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rename to assays/S3_A5_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt
diff --git a/assays/S5_A3_GO-term/isa.assay.xlsx b/assays/S3_A5_GO-term/isa.assay.xlsx
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diff --git a/assays/S5_A3_GO-term/protocols/.gitkeep b/assays/S3_A5_GO-term/protocols/.gitkeep
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rename from assays/S5_A3_GO-term/protocols/.gitkeep
rename to assays/S3_A5_GO-term/protocols/.gitkeep
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