From 6adaf82f41f5c555c51ba343b56d4beb66b97239 Mon Sep 17 00:00:00 2001
From: Sabrina Zander <sabrina.zander@uni-duesseldorf.de>
Date: Mon, 27 Jan 2025 11:04:59 +0000
Subject: [PATCH] rename HyperTRIBE to S2

---
 .../README.md                                       |   0
 .../dataset/.gitkeep                                |   0
 .../editingsite_Rrm4_Ada_Gfp_rep1.bedgraph          |   0
 .../editingsite_Rrm4_Ada_Gfp_rep2.bedgraph          |   0
 .../editingsite_control-Ada_rep1.bedgraph           |   0
 .../editingsite_control-Ada_rep2.bedgraph           |   0
 .../RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz     |   0
 .../RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz     |   0
 .../RNAseq_files_raw/control-Ada_rep1.fastq.gz      |   0
 .../RNAseq_files_raw/control-Ada_rep2.fastq.gz      |   0
 .../dataset/Rrm4_Ada_Gfp_Analysis.Rmd               |   0
 .../dataset/Rrm4_Ada_Gfp_Analysis.html              |   0
 .../isa.assay.xlsx                                  | Bin
 .../protocols/.gitkeep                              |   0
 .../README.md                                       |   0
 .../dataset/.gitkeep                                |   0
 .../dataset/01_hyperTRIBE_v5_verfied_rrm4.Rmd       |   0
 .../dataset/01_hyperTRIBE_v5_verfied_rrm4.html      |   0
 .../isa.assay.xlsx                                  | Bin
 .../protocols/.gitkeep                              |   0
 20 files changed, 0 insertions(+), 0 deletions(-)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/README.md (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/.gitkeep (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep1.bedgraph (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep2.bedgraph (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Processed_files/editingsite_control-Ada_rep1.bedgraph (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Processed_files/editingsite_control-Ada_rep2.bedgraph (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/RNAseq_files_raw/control-Ada_rep1.fastq.gz (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/RNAseq_files_raw/control-Ada_rep2.fastq.gz (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Rrm4_Ada_Gfp_Analysis.Rmd (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/dataset/Rrm4_Ada_Gfp_Analysis.html (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/isa.assay.xlsx (100%)
 rename assays/{S3_A2_HyperTRIBE_Rrm4_analysis => S2_A4_HyperTRIBE_Rrm4_analysis}/protocols/.gitkeep (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/README.md (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/dataset/.gitkeep (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/dataset/01_hyperTRIBE_v5_verfied_rrm4.Rmd (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/dataset/01_hyperTRIBE_v5_verfied_rrm4.html (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/isa.assay.xlsx (100%)
 rename assays/{S3_A3_HyperTRIBE_Rrm4_iCLIP => S2_A5_HyperTRIBE_Rrm4_iCLIP}/protocols/.gitkeep (100%)

diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/README.md b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/README.md
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/README.md
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/.gitkeep b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/.gitkeep
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/.gitkeep
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diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep1.bedgraph b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep1.bedgraph
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep1.bedgraph
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep1.bedgraph
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep2.bedgraph b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep2.bedgraph
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep2.bedgraph
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_Rrm4_Ada_Gfp_rep2.bedgraph
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep1.bedgraph b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep1.bedgraph
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep1.bedgraph
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep1.bedgraph
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep2.bedgraph b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep2.bedgraph
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep2.bedgraph
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Processed_files/editingsite_control-Ada_rep2.bedgraph
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep1.fastq.gz
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/Rrm4-Ada-Gfp_rep2.fastq.gz
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep1.fastq.gz b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep1.fastq.gz
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep1.fastq.gz
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep1.fastq.gz
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep2.fastq.gz b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep2.fastq.gz
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep2.fastq.gz
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/RNAseq_files_raw/control-Ada_rep2.fastq.gz
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.Rmd b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.Rmd
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.Rmd
rename to assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.Rmd
diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.html b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.html
similarity index 100%
rename from assays/S3_A2_HyperTRIBE_Rrm4_analysis/dataset/Rrm4_Ada_Gfp_Analysis.html
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diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/isa.assay.xlsx b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/isa.assay.xlsx
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diff --git a/assays/S3_A2_HyperTRIBE_Rrm4_analysis/protocols/.gitkeep b/assays/S2_A4_HyperTRIBE_Rrm4_analysis/protocols/.gitkeep
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diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/README.md b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md
similarity index 100%
rename from assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/README.md
rename to assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/README.md
diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/dataset/.gitkeep b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/dataset/.gitkeep
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diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/dataset/01_hyperTRIBE_v5_verfied_rrm4.Rmd b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/dataset/01_hyperTRIBE_v5_verfied_rrm4.Rmd
similarity index 100%
rename from assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/dataset/01_hyperTRIBE_v5_verfied_rrm4.Rmd
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diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/dataset/01_hyperTRIBE_v5_verfied_rrm4.html b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/dataset/01_hyperTRIBE_v5_verfied_rrm4.html
similarity index 100%
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diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/isa.assay.xlsx b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/isa.assay.xlsx
similarity index 100%
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diff --git a/assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/protocols/.gitkeep b/assays/S2_A5_HyperTRIBE_Rrm4_iCLIP/protocols/.gitkeep
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rename from assays/S3_A3_HyperTRIBE_Rrm4_iCLIP/protocols/.gitkeep
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-- 
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