diff --git a/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif b/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif
deleted file mode 100644
index 38f0442a7e519f69cec7da9f2ea2a9e26a9de259..0000000000000000000000000000000000000000
--- a/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:b875e70388fb86127855e731f53d0349cd7474928cbea8ede8354c420c132dd9
-size 2793028
diff --git a/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif b/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif
deleted file mode 100644
index 76966a5965521d6196af390a9d58f4e853e038f9..0000000000000000000000000000000000000000
--- a/assays/S01_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7e362afed56d533ae17f742a8e1223dccaedc3dd8844f0f749c95648aab84462
-size 2793026
diff --git a/assays/S01_A1_microscopy_yeast/README.md b/assays/S1_A1_microscopy_yeast/README.md
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/README.md
rename to assays/S1_A1_microscopy_yeast/README.md
diff --git a/assays/S01_A1_microscopy_yeast/dataset/.gitkeep b/assays/S1_A1_microscopy_yeast/dataset/.gitkeep
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/.gitkeep
rename to assays/S1_A1_microscopy_yeast/dataset/.gitkeep
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-10.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-10.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-10.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-10.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-11.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-11.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-11.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-11.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-12.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-12.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-12.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-12.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-13.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-13.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-13.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-13.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-14.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-14.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-14.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-14.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-15.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-15.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-15.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-15.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-16.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-16.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-16.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-16.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-2.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-2.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-2.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-2.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-3.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-3.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-3.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-3.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-4.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-4.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-4.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-4.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-5.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-5.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-5.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-5.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-6.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-6.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-6.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-6.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-7.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-7.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-7.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-7.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-8.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-8.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-8.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-8.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-9.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-9.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-9.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC-9.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC.tif b/assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC.tif
rename to assays/S1_A1_microscopy_yeast/dataset/AB33/yeast/AB33 0h/DIC.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-10.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-10.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-10.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-10.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-11.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-11.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-11.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-11.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-12.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-12.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-12.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-12.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-13.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-13.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-13.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-13.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-14.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-14.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-14.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-14.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-15.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-15.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-15.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-15.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-16.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-16.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-16.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-16.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-17.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-17.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-17.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-17.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-18.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-18.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-18.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-18.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-19.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-19.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-19.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-19.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-2.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-2.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-2.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-2.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-20.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-20.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-20.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-20.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-21.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-21.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-21.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-21.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-22.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-22.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-22.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-22.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-23.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-23.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-23.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-23.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-24.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-24.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-24.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-24.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-25.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-25.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-25.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-25.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-26.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-26.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-26.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-26.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-3.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-3.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-3.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-3.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-4.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-4.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-4.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-4.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-5.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-5.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-5.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-5.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-6.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-6.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-6.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-6.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-7.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-7.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-7.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-7.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-8.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-8.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-8.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-8.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-9.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-9.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-9.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC-9.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC.tif b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC.tif
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC.tif
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/Khd4D 0h/DIC.tif
diff --git a/assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/README.txt b/assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/README.txt
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/dataset/Khd4D/yeast/README.txt
rename to assays/S1_A1_microscopy_yeast/dataset/Khd4D/yeast/README.txt
diff --git a/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif b/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif
new file mode 100644
index 0000000000000000000000000000000000000000..d5e3f4d82e9e7b24ab5304fc7c6db478643f13da
--- /dev/null
+++ b/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_bottom.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8af9fafadaa40a6f36581b6b3e34da30157e6cef79e626f408542c5fb09f4ccb
+size 132
diff --git a/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif b/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif
new file mode 100644
index 0000000000000000000000000000000000000000..25a9fe2b06ffeb125b9bac848a2e220c24e596be
--- /dev/null
+++ b/assays/S1_A1_microscopy_yeast/dataset/microscopic_images_shown_in_the_manuscript/FigS1A_top.tif
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bea7fa500de1d396d8f18f2af58ce20d26eec29caf03c94d0148262f242fa05f
+size 132
diff --git a/assays/S01_A1_microscopy_yeast/isa.assay.xlsx b/assays/S1_A1_microscopy_yeast/isa.assay.xlsx
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/isa.assay.xlsx
rename to assays/S1_A1_microscopy_yeast/isa.assay.xlsx
diff --git a/assays/S01_A1_microscopy_yeast/protocols/.gitkeep b/assays/S1_A1_microscopy_yeast/protocols/.gitkeep
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/protocols/.gitkeep
rename to assays/S1_A1_microscopy_yeast/protocols/.gitkeep
diff --git a/assays/S01_A1_microscopy_yeast/protocols/Growth_condition.md b/assays/S1_A1_microscopy_yeast/protocols/Growth_condition.md
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/protocols/Growth_condition.md
rename to assays/S1_A1_microscopy_yeast/protocols/Growth_condition.md
diff --git a/assays/S01_A1_microscopy_yeast/protocols/microscopy.md b/assays/S1_A1_microscopy_yeast/protocols/microscopy.md
similarity index 100%
rename from assays/S01_A1_microscopy_yeast/protocols/microscopy.md
rename to assays/S1_A1_microscopy_yeast/protocols/microscopy.md