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https://git-lfs.github.com/spec/v1 +oid sha256:eedfac24261ebcd0aa7fdf85a5fc8ce34e7a0b208a15c4b113e17f5b70b978a3 +size 3182059 diff --git a/assays/S5_A3_GO-term/dataset/cytoscape_network_GOterm.cys b/assays/S5_A3_GO-term/dataset/cytoscape_network_GOterm.cys new file mode 100644 index 0000000..718dd77 --- /dev/null +++ b/assays/S5_A3_GO-term/dataset/cytoscape_network_GOterm.cys @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1fefcb4d05af48ab2fa2d1a5c14c09dc2e6f159f4900826e50304d8d62a8ac5e +size 1414129 diff --git a/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.csv b/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.csv new file mode 100644 index 0000000..d56019b --- /dev/null +++ b/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.csv @@ -0,0 +1,37 @@ +1,2,3,GO term_ID,,,,,,,,,child,,,parent,, +UMAG_00949,probable RAS GTPase-activating protein sar1,3´ UT,GO:0030695,GO:0007264,,,,,,,,,,,,, +UMAG_02431,Uncharacterized protein,3´ UT,GO:0030696,,,,,,,,,,,,,, +UMAG_04352,probable MOB1 protein,3´ UT,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,,,, +UMAG_11909,Putative GTP-binding protein,3´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_10313,probable ARL1 - ADP-ribosylation factor,3´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_01161,Uncharacterized protein,3´UT,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,, +UMAG_10152,cytokinesis protein Don1,5´ UT,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,, +UMAG_12272,Ste20-like protein kinase with effect on mating,5´ UT,GO:0007265,GO:0007264,GO:0007266,,,,,,,,,,,, +UMAG_01834,Uncharacterized protein,5´UT,GO:0030695,,,,,,,,,,,,,, +UMAG_06062,Rho-GAP domain-containing protein,5´UT,GO:0030695,,,,,,,,,,,,,, +UMAG_10461,SEC7 domain containing protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,,,,,, +UMAG_00149,Uncharacterized protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,,,,MF,GO:0005085,GO:0030695,,, +UMAG_01378,Uncharacterized protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,, +UMAG_12185,DH domain-containing protein,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,BP,GO:0046578,GO:0051056,GO:0007266,GO:0007265,GO:0007264 +UMAG_10305,Rab-GAP TBC domain-containing protein,ORF,GO:0030695,,,,,,,,,,,,,, +UMAG_15070,probable to GDP/GTP exchange factor Rom2p,ORF,GO:0030695,GO:0005085,GO:0046578,GO:0007265,GO:0051056,GO:0007264,GO:0007266,,,,,,,, +UMAG_04323,Uncharacterized protein,ORF,GO:0030695,GO:0005085,,,,,,,,,,,,, +,,,,,,,,,,,,,,,,, +GeneID,Description,Position,GO term_ID,,,,,,,,,,,,,, +UMAG_10313,probable ARL1 - ADP-ribosylation factor,3´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_02431,Uncharacterized protein,3´ UT,GO:0030696,,,,,,,,,,,,,, +UMAG_04352,probable MOB1 protein,3´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_11909,Putative GTP-binding protein,3´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_00949,probable RAS GTPase-activating protein sar1,3´ UT,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_01161,Uncharacterized protein,3´UT,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_10152,cytokinesis protein Don1,5´ UT,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_12272,Ste20-like protein kinase with effect on mating,5´ UT,GO:0007264,,,,,,,,,,,,,, +UMAG_01834,Uncharacterized protein,5´UT,GO:0030695,,,,,,,,,,,,,, +UMAG_06062,Rho-GAP domain-containing protein,5´UT,GO:0030695,,,,,,,,,,,,,, +UMAG_10461,SEC7 domain containing protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_00149,Uncharacterized protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_01378,Uncharacterized protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_12185,DH domain-containing protein,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_10305,Rab-GAP TBC domain-containing protein,ORF,GO:0030695,,,,,,,,,,,,,, +UMAG_15070,probable to GDP/GTP exchange factor Rom2p,ORF,GO:0030695; GO:0007264,,,,,,,,,,,,,, +UMAG_04323,Uncharacterized protein,ORF,GO:0030695,,,,,,,,,,,,,, diff --git a/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt b/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt new file mode 100644 index 0000000..da5912a --- /dev/null +++ b/assays/S5_A3_GO-term/dataset/gProfiler_GO_term_Khd4_bound_mRNA.gem.txt @@ -0,0 +1,26 @@ +GO.ID Description p.Val FDR Phenotype Genes +GO:0030695 GTPase regulator activity 0.0015580229766539884 0.0015580229766539884 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04323,UMAG_06062 +GO:0060589 nucleoside-triphosphatase regulator activity 0.0015580229766539884 0.0015580229766539884 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04323,UMAG_06062 +GO:0030234 enzyme regulator activity 0.00656421799800359 0.00656421799800359 +1 UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04352,UMAG_04323,UMAG_05537,UMAG_06062 +GO:0005085 guanyl-nucleotide exchange factor activity 0.010690823028362743 0.010690823028362743 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04323 +GO:0098772 molecular function regulator activity 0.0120514218652177 0.0120514218652177 +1 UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_04352,UMAG_04323,UMAG_05537,UMAG_06062 +GO:0003700 DNA-binding transcription factor activity 0.028590709572822438 0.028590709572822438 +1 UMAG_15041,UMAG_00742,UMAG_10005,UMAG_15036,UMAG_01597,UMAG_15042,UMAG_06280,UMAG_12189,UMAG_02835,UMAG_03296,UMAG_03514,UMAG_03557,UMAG_04242,UMAG_05054,UMAG_04806,UMAG_05966 +GO:0050789 regulation of biological process 0.00010792680637933052 0.00010792680637933052 +1 UMAG_15041,UMAG_00389,UMAG_12154,UMAG_10461,UMAG_00698,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_01623,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10313,UMAG_02958,UMAG_10335,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087 +GO:0065007 biological regulation 0.0002142329477784967 0.0002142329477784967 +1 UMAG_15041,UMAG_00389,UMAG_12154,UMAG_10461,UMAG_00698,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_01623,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_02431,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10305,UMAG_10313,UMAG_02958,UMAG_10335,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_04423,UMAG_04323,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_10210,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087 +GO:0046578 regulation of Ras protein signal transduction 0.0003497657522741185 0.0003497657522741185 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04352 +GO:0007265 Ras protein signal transduction 0.0003745356298264662 0.0003745356298264662 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_12272,UMAG_04352 +GO:0051056 regulation of small GTPase mediated signal transduction 0.00048409203338101766 0.00048409203338101766 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_04352 +GO:0050794 regulation of cellular process 0.0005563734108074192 0.0005563734108074192 +1 UMAG_15041,UMAG_00389,UMAG_10461,UMAG_00742,UMAG_00149,UMAG_10005,UMAG_10097,UMAG_01161,UMAG_11301,UMAG_15036,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01891,UMAG_15093,UMAG_01597,UMAG_15042,UMAG_10177,UMAG_05194,UMAG_06280,UMAG_12189,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_02346,UMAG_11410,UMAG_10313,UMAG_02958,UMAG_02835,UMAG_03296,UMAG_03305,UMAG_03446,UMAG_03514,UMAG_03557,UMAG_03680,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04059,UMAG_04242,UMAG_04253,UMAG_04578,UMAG_04579,UMAG_12272,UMAG_04603,UMAG_04671,UMAG_04352,UMAG_05054,UMAG_10916,UMAG_04806,UMAG_05505,UMAG_05966,UMAG_06062,UMAG_11601,UMAG_06087 +GO:0007264 small GTPase mediated signal transduction 0.0025145934586805157 0.0025145934586805157 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_10313,UMAG_15070,UMAG_12272,UMAG_04352 +GO:0050790 regulation of catalytic activity 0.005067462344808369 0.005067462344808369 +1 UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_12272,UMAG_04352,UMAG_04323,UMAG_06062,UMAG_11601 +GO:0035556 intracellular signal transduction 0.006913553299372791 0.006913553299372791 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06087 +GO:1902531 regulation of intracellular signal transduction 0.007153811899537903 0.007153811899537903 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352 +GO:0065009 regulation of molecular function 0.012553810468775807 0.012553810468775807 +1 UMAG_00389,UMAG_10461,UMAG_00698,UMAG_00149,UMAG_01161,UMAG_01296,UMAG_01378,UMAG_00949,UMAG_01834,UMAG_10152,UMAG_02431,UMAG_12185,UMAG_10305,UMAG_15070,UMAG_12272,UMAG_04352,UMAG_04323,UMAG_06062,UMAG_11601 +GO:0007165 signal transduction 0.02377820110264092 0.02377820110264092 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087 +GO:0023052 signaling 0.02377820110264092 0.02377820110264092 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087 +GO:0007154 cell communication 0.04414425478611278 0.04414425478611278 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_00949,UMAG_15093,UMAG_10177,UMAG_10152,UMAG_11909,UMAG_12185,UMAG_11410,UMAG_10313,UMAG_03305,UMAG_03446,UMAG_03760,UMAG_15070,UMAG_03973,UMAG_04242,UMAG_12272,UMAG_04671,UMAG_04352,UMAG_06062,UMAG_06087 +GO:0007266 Rho protein signal transduction 0.04490142010780591 0.04490142010780591 +1 UMAG_01378,UMAG_10152,UMAG_12185,UMAG_15070,UMAG_12272 +GO:0009966 regulation of signal transduction 0.04533168604694459 0.04533168604694459 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352 +GO:0023051 regulation of signaling 0.04533168604694459 0.04533168604694459 +1 UMAG_10461,UMAG_00149,UMAG_01161,UMAG_01378,UMAG_10152,UMAG_12185,UMAG_03760,UMAG_15070,UMAG_12272,UMAG_04352 +KEGG:04113 Meiosis - yeast 0.012054610898039367 0.012054610898039367 +1 UMAG_00389,UMAG_15042,UMAG_10177,UMAG_06337,UMAG_11525,UMAG_04059,UMAG_06087 +KEGG:04111 Cell cycle - yeast 0.014450425211853222 0.014450425211853222 +1 UMAG_00389,UMAG_06337,UMAG_03305,UMAG_03446,UMAG_11525,UMAG_04059,UMAG_04352,UMAG_06087 \ No newline at end of file -- GitLab