From dbadb545cab85f69bb94249bc8332019ef99ae49 Mon Sep 17 00:00:00 2001 From: Sabrina Zander <sabrina.zander@uni-duesseldorf.de> Date: Tue, 28 Jan 2025 11:51:44 +0100 Subject: [PATCH] add readme files to assays --- assays/S5_A2_Kat_protein_level/README.md | 2 ++ assays/S5_A3_Kat_mRNA_level/README.md | 2 ++ assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md | 2 ++ assays/S6_A2_analysis_specific_targets/README.md | 2 ++ assays/S6_A3_Kat-strains_microscopy/README.md | 2 ++ assays/S6_A3_Kat-strains_microscopy/dataset/README.md | 3 +++ assays/S6_A4_relative_fluorescence_level/README.md | 2 ++ assays/S8_A1_microscopy_FM4-64/README.md | 2 ++ assays/S8_A2_microscopy_CMAG/README.md | 2 ++ 9 files changed, 19 insertions(+) create mode 100644 assays/S6_A3_Kat-strains_microscopy/dataset/README.md diff --git a/assays/S5_A2_Kat_protein_level/README.md b/assays/S5_A2_Kat_protein_level/README.md index e69de29..8c3601a 100644 --- a/assays/S5_A2_Kat_protein_level/README.md +++ b/assays/S5_A2_Kat_protein_level/README.md @@ -0,0 +1,2 @@ +# S5_A2_Kat_protein_level +This assay include the raw data of the Kat flourescence levels measured in on and off conditions shown in Figure S10C and Figure 4E. \ No newline at end of file diff --git a/assays/S5_A3_Kat_mRNA_level/README.md b/assays/S5_A3_Kat_mRNA_level/README.md index e69de29..3a2c75a 100644 --- a/assays/S5_A3_Kat_mRNA_level/README.md +++ b/assays/S5_A3_Kat_mRNA_level/README.md @@ -0,0 +1,2 @@ +# S5_A3_Kat_mRNA_level +This assay include the mKate2_mRNA expression data shown in Figure 4F . \ No newline at end of file diff --git a/assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md b/assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md index e69de29..6e0eb41 100644 --- a/assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md +++ b/assays/S6_A1_RNAseq_analysis_yeast_vs_hyphae/README.md @@ -0,0 +1,2 @@ +# S6_A1_RNAseq_analysis_yeast_vs_hyphae +This assay includes script to analyse the differential gene expression and GO-term analysis (yeast versus hyphae) shown in Figure 5 A-C, Figure 6, and Figure S13 A-B. \ No newline at end of file diff --git a/assays/S6_A2_analysis_specific_targets/README.md b/assays/S6_A2_analysis_specific_targets/README.md index e69de29..bf12805 100644 --- a/assays/S6_A2_analysis_specific_targets/README.md +++ b/assays/S6_A2_analysis_specific_targets/README.md @@ -0,0 +1,2 @@ +# S6_A2_analysis_specific_targets +This assay includes the script to analyse specific targets shown in Figure 11 B-D. \ No newline at end of file diff --git a/assays/S6_A3_Kat-strains_microscopy/README.md b/assays/S6_A3_Kat-strains_microscopy/README.md index e69de29..140fec7 100644 --- a/assays/S6_A3_Kat-strains_microscopy/README.md +++ b/assays/S6_A3_Kat-strains_microscopy/README.md @@ -0,0 +1,2 @@ +# S6_A3_Kat-strains_microscopy +This assay includes microscopic images of the Arl1, Hok1 and Vma21 expression strains shown in Figure 5D, Figure S11 F. \ No newline at end of file diff --git a/assays/S6_A3_Kat-strains_microscopy/dataset/README.md b/assays/S6_A3_Kat-strains_microscopy/dataset/README.md new file mode 100644 index 0000000..134cd9c --- /dev/null +++ b/assays/S6_A3_Kat-strains_microscopy/dataset/README.md @@ -0,0 +1,3 @@ +UL12: AB33 Ptef: hok1-kat_ hok1 3´ UTR / Pcrg1: khd4-gfp /khd4Δ/upp3Δ +UL8: AB33 Ptef: arl1-kat_ arl1 3´ UTR / Pcrg1: khd4-gfp /khd4Δ/upp3Δ +UL9: AB33 Ptef: vma21-kat_ vma21 3´ UTR / Pcrg1: khd4-gfp /khd4Δ/upp3Δ diff --git a/assays/S6_A4_relative_fluorescence_level/README.md b/assays/S6_A4_relative_fluorescence_level/README.md index e69de29..f8ab272 100644 --- a/assays/S6_A4_relative_fluorescence_level/README.md +++ b/assays/S6_A4_relative_fluorescence_level/README.md @@ -0,0 +1,2 @@ +# S6_A4_relative_fluorescence_level +This assay shows the flourescence signal data and analysis of the Arl1, Hok1 and Vma21 expression strains shown in Figure S11 G. \ No newline at end of file diff --git a/assays/S8_A1_microscopy_FM4-64/README.md b/assays/S8_A1_microscopy_FM4-64/README.md index e69de29..7b7a45e 100644 --- a/assays/S8_A1_microscopy_FM4-64/README.md +++ b/assays/S8_A1_microscopy_FM4-64/README.md @@ -0,0 +1,2 @@ +# S8_A1_microscopy_FM4-64 +This assay includes microscopic images and quantification data of WT, did2D and khd4D strains, stained with FM4-64 shown in Figure S13 C-D. \ No newline at end of file diff --git a/assays/S8_A2_microscopy_CMAG/README.md b/assays/S8_A2_microscopy_CMAG/README.md index e69de29..7366e1e 100644 --- a/assays/S8_A2_microscopy_CMAG/README.md +++ b/assays/S8_A2_microscopy_CMAG/README.md @@ -0,0 +1,2 @@ +# S8_A2_microscopy_CMAG +This assay includes microscopic images and quantification data of WT, did2D and khd4D strains, stained with CMAG shown in Figure 7 . \ No newline at end of file -- GitLab