From f96009d72349548fdb76526698850f0b9c512c15 Mon Sep 17 00:00:00 2001
From: Sabrina Zander <sabrina.zander@uni-duesseldorf.de>
Date: Tue, 28 Jan 2025 11:32:10 +0100
Subject: [PATCH] add more readme files

---
 assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md           | 2 ++
 assays/S3_A4_HyperTRIBE_motif_analysis/README.md          | 2 ++
 assays/S3_A5_GO-term/README.md                            | 2 ++
 assays/S4_A1_RNAseq_data/README.md                        | 2 ++
 assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md | 2 ++
 assays/S5_A1_microscopy_khd4-targets/README.md            | 2 ++
 assays/S5_A1_microscopy_khd4-targets/dataset/README.md    | 5 +++++
 7 files changed, 17 insertions(+)
 create mode 100644 assays/S5_A1_microscopy_khd4-targets/dataset/README.md

diff --git a/assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md b/assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md
index e69de29..3210ebb 100644
--- a/assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md
+++ b/assays/S3_A3_HyperTRIBE_Khd4_workflow/README.md
@@ -0,0 +1,2 @@
+# S3_A3_HyperTRIBE_Khd4_workflow
+This assay includes the RNAseq files (raw/processed) and scripts used for the analysis of the Kdh4-Ada-GFP constructs shown in Figure 3A, Figure S6A.  
\ No newline at end of file
diff --git a/assays/S3_A4_HyperTRIBE_motif_analysis/README.md b/assays/S3_A4_HyperTRIBE_motif_analysis/README.md
index e69de29..ecc5cd5 100644
--- a/assays/S3_A4_HyperTRIBE_motif_analysis/README.md
+++ b/assays/S3_A4_HyperTRIBE_motif_analysis/README.md
@@ -0,0 +1,2 @@
+# S3_A3_HyperTRIBE_motif_analysis
+This assay includes the scripts used for the motif analysis of the Kdh4-Ada-GFP constructs shown in Figure S6 B-E, Figure 3, Figure S7, Figure S8 A-D  
\ No newline at end of file
diff --git a/assays/S3_A5_GO-term/README.md b/assays/S3_A5_GO-term/README.md
index e69de29..c75ed55 100644
--- a/assays/S3_A5_GO-term/README.md
+++ b/assays/S3_A5_GO-term/README.md
@@ -0,0 +1,2 @@
+# S3_A5_GO-term
+This assay includes the scripts used for the GO-term analysis of the Kdh4-Ada-GFP constructs shown S8 E, Figure S9  
\ No newline at end of file
diff --git a/assays/S4_A1_RNAseq_data/README.md b/assays/S4_A1_RNAseq_data/README.md
index e69de29..ebd3e4a 100644
--- a/assays/S4_A1_RNAseq_data/README.md
+++ b/assays/S4_A1_RNAseq_data/README.md
@@ -0,0 +1,2 @@
+# S4_A1_RNAseq_data
+This assay includes RNAseq data (raw / processed ) for  khd4D and WT yeast and hyphae shown in Figure 4 A-C, Fig S10A   
\ No newline at end of file
diff --git a/assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md b/assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md
index e69de29..943bca0 100644
--- a/assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md
+++ b/assays/S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae/README.md
@@ -0,0 +1,2 @@
+# S4_A2_RNAseq_analysis_khd4D_vs_wt_hyphae
+This assay includes the script for RNAseq analysis for khd4D and WT yeast and hyphae shown in Figure 4 A-C, Fig S10A . 
\ No newline at end of file
diff --git a/assays/S5_A1_microscopy_khd4-targets/README.md b/assays/S5_A1_microscopy_khd4-targets/README.md
index e69de29..0663583 100644
--- a/assays/S5_A1_microscopy_khd4-targets/README.md
+++ b/assays/S5_A1_microscopy_khd4-targets/README.md
@@ -0,0 +1,2 @@
+# S5_A1_microscopy_khd4-targets 
+This assay includes microscopic images of the differnt motife strains shown in Figure S10B.
diff --git a/assays/S5_A1_microscopy_khd4-targets/dataset/README.md b/assays/S5_A1_microscopy_khd4-targets/dataset/README.md
new file mode 100644
index 0000000..0ca45be
--- /dev/null
+++ b/assays/S5_A1_microscopy_khd4-targets/dataset/README.md
@@ -0,0 +1,5 @@
+3139: AB33 Ptef: kat_no motif / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3140: AB33 Ptef: kat_(auaccc)6 / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3141: AB33 Ptef: kat_(agaucu)6 / Pcrg1: khd4-gfp / khd4Δ / upp3Δ
+3238: AB33 Ptef: kat_(auaccc) / Pcrg1: khd4-gfp /khd4Δ/upp3Δ
+3239: AB33 Ptef: kat_(agaucu) / Pcrg1: khd4-gfp /khd4Δ/upp3Δ
\ No newline at end of file
-- 
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