From 9c88a08ab72d7d77bf5b9d0c9fa73ee0d5964160 Mon Sep 17 00:00:00 2001
From: Tom Winkler <t.winkler@uni-koeln.de>
Date: Thu, 26 Sep 2024 15:34:31 +0200
Subject: [PATCH] WGS data

---
 .gitattributes                                |   8 ++++++++
 assays/BSA_RNAseq/isa.assay.xlsx              | Bin 9292 -> 9292 bytes
 assays/BSA_WGS/dataset/AM_00331_gf_1.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00331_gf_2.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00331_rf_1.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00331_rf_2.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00332_gl_1.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00332_gl_2.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00332_rl_1.fq.gz    |   3 +++
 assays/BSA_WGS/dataset/AM_00332_rl_2.fq.gz    |   3 +++
 assays/BSA_WGS/isa.assay.xlsx                 | Bin 9310 -> 9310 bytes
 .../isa.assay.xlsx                            | Bin 9276 -> 9276 bytes
 .../isa.assay.xlsx                            | Bin 10100 -> 10100 bytes
 assays/isoform_sequencing/isa.assay.xlsx      | Bin 9323 -> 9323 bytes
 isa.investigation.xlsx                        | Bin 8416 -> 8416 bytes
 .../BSA_parent_betalain_quant/isa.study.xlsx  | Bin 12583 -> 12583 bytes
 .../Bulk_segregant_analysis/isa.study.xlsx    | Bin 10585 -> 10585 bytes
 studies/additional_data/isa.study.xlsx        | Bin 7504 -> 7504 bytes
 studies/isoform_sequencing/isa.study.xlsx     | Bin 10163 -> 10163 bytes
 19 files changed, 32 insertions(+)
 create mode 100755 assays/BSA_WGS/dataset/AM_00331_gf_1.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00331_gf_2.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00331_rf_1.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00331_rf_2.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00332_gl_1.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00332_gl_2.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00332_rl_1.fq.gz
 create mode 100755 assays/BSA_WGS/dataset/AM_00332_rl_2.fq.gz

diff --git a/.gitattributes b/.gitattributes
index b6ced49..7e60790 100644
--- a/.gitattributes
+++ b/.gitattributes
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 assays/BSA_RNAseq/dataset/AM_00332_rf_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
 assays/BSA_RNAseq/dataset/AM_00331_gf_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
+assays/BSA_WGS/dataset/AM_00332_gl_2.fq.gz filter=lfs diff=lfs merge=lfs -text
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+assays/BSA_WGS/dataset/AM_00332_rl_2.fq.gz filter=lfs diff=lfs merge=lfs -text
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+assays/BSA_WGS/dataset/AM_00331_gf_2.fq.gz filter=lfs diff=lfs merge=lfs -text
+assays/BSA_WGS/dataset/AM_00331_rf_1.fq.gz filter=lfs diff=lfs merge=lfs -text
+assays/BSA_WGS/dataset/AM_00331_rf_2.fq.gz filter=lfs diff=lfs merge=lfs -text
+assays/BSA_WGS/dataset/AM_00332_gl_1.fq.gz filter=lfs diff=lfs merge=lfs -text
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diff --git a/assays/isoform_sequencing/isa.assay.xlsx b/assays/isoform_sequencing/isa.assay.xlsx
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GIT binary patch
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diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx
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GIT binary patch
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delta 616
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diff --git a/studies/BSA_parent_betalain_quant/isa.study.xlsx b/studies/BSA_parent_betalain_quant/isa.study.xlsx
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diff --git a/studies/Bulk_segregant_analysis/isa.study.xlsx b/studies/Bulk_segregant_analysis/isa.study.xlsx
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diff --git a/studies/additional_data/isa.study.xlsx b/studies/additional_data/isa.study.xlsx
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diff --git a/studies/isoform_sequencing/isa.study.xlsx b/studies/isoform_sequencing/isa.study.xlsx
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GIT binary patch
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