diff --git a/.gitattributes b/.gitattributes index 213847c785d8f896f2dbf4e32a80b81aa873a730..49497fa2d3744bd65de264e641a41f1c74bd82d8 100644 --- a/.gitattributes +++ b/.gitattributes @@ -56,3 +56,37 @@ assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/ assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2.tif filter=lfs diff=lfs merge=lfs -text assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d2.tif filter=lfs diff=lfs merge=lfs -text assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d4_2.0.tif filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW13.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW55.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW61.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW62.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW28.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW40.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW56.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TWBlank.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_4.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_7.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW16.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW52.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_5.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW10.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW19.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW4.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW50.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW54.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW59.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW60.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW1.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW31.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW37.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW46.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW51.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW53.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW7.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW25.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW57.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW34.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW43.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW58.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification/dataset/TW63.mzML filter=lfs diff=lfs merge=lfs -text +assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_8.mzML filter=lfs diff=lfs merge=lfs -text diff --git a/assays/BSA_RNAseq/isa.assay.xlsx b/assays/BSA_RNAseq/isa.assay.xlsx index 2d7a895dc6909e5659e5cb3619b0032d4e33abe6..c7c7ce62c9c5e1b5f0a3a2e062a2bf1066ee2737 100644 Binary files a/assays/BSA_RNAseq/isa.assay.xlsx and b/assays/BSA_RNAseq/isa.assay.xlsx differ diff --git a/assays/BSA_WGS/isa.assay.xlsx b/assays/BSA_WGS/isa.assay.xlsx index b3f102b4a1da220aa34f73b1908406ea2772f0ad..dd393c6da50833c7bd9cec4218ae07bf1dcf78d7 100644 Binary files a/assays/BSA_WGS/isa.assay.xlsx and b/assays/BSA_WGS/isa.assay.xlsx differ diff --git a/assays/betalain_LCMS_quantification/dataset/.~lock.Betalain_quantification_summary.xlsx# b/assays/betalain_LCMS_quantification/dataset/.~lock.Betalain_quantification_summary.xlsx# new file mode 100644 index 0000000000000000000000000000000000000000..b8fa51de88b5d6f8d3715ee0a734c2715369214f --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/.~lock.Betalain_quantification_summary.xlsx# @@ -0,0 +1 @@ +,tom,tom-Spin-SP513-55N,11.11.2024 10:43,file:///home/tom/.config/libreoffice/4; \ No newline at end of file diff --git a/assays/betalain_LCMS_quantification/dataset/TW1.mzML b/assays/betalain_LCMS_quantification/dataset/TW1.mzML new file mode 100755 index 0000000000000000000000000000000000000000..9f998c096ae6ef22cfaf52ca13a8ff21683d4eea --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW1.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a60c2764cdfe32fd38ea4452651ac265c19cd14ee2f28ce5f9055d0f9c5b1919 +size 68797524 diff --git a/assays/betalain_LCMS_quantification/dataset/TW10.mzML b/assays/betalain_LCMS_quantification/dataset/TW10.mzML new file mode 100755 index 0000000000000000000000000000000000000000..7dc496ea6e840f072960e9e48ae97f28ae17e076 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW10.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3e58ddb7f58a54066788d416a1c3b11960c0ad3c9e312b18ad877df4a20511e1 +size 67002456 diff --git a/assays/betalain_LCMS_quantification/dataset/TW13.mzML b/assays/betalain_LCMS_quantification/dataset/TW13.mzML new file mode 100755 index 0000000000000000000000000000000000000000..4e97faf0b3a688e37106b5ac23df037be16a63de --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW13.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:beb53b32aa3684dae80a64ea42f81568a395085582dbd42de7b244b6cecab03c +size 73598267 diff --git a/assays/betalain_LCMS_quantification/dataset/TW16.mzML b/assays/betalain_LCMS_quantification/dataset/TW16.mzML new file mode 100755 index 0000000000000000000000000000000000000000..e96830051f4986d4fb7c129d31090658792ccd3a --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW16.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:742db122f95267d40718f93df1acc57786b1e86fce8835680787145cbdd838f3 +size 70277156 diff --git a/assays/betalain_LCMS_quantification/dataset/TW19.mzML b/assays/betalain_LCMS_quantification/dataset/TW19.mzML new file mode 100755 index 0000000000000000000000000000000000000000..7dcf706a199a79e43223131b69238d1ffc34762c --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW19.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d7445b8c22037482b9420eb0809a085ca257e78801bb7c29f1a0473ceb7aee01 +size 66784322 diff --git a/assays/betalain_LCMS_quantification/dataset/TW25.mzML b/assays/betalain_LCMS_quantification/dataset/TW25.mzML new file mode 100755 index 0000000000000000000000000000000000000000..71dd9a43809d966d9b92cb4e5ff19e6d931605ab --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW25.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b75c738cd03e0a8926acaaaab9419ac6a71529001a0b2af33f054da1a0991bc7 +size 67479496 diff --git a/assays/betalain_LCMS_quantification/dataset/TW28.mzML b/assays/betalain_LCMS_quantification/dataset/TW28.mzML new file mode 100755 index 0000000000000000000000000000000000000000..9de7ddbcaf035320f1c2a7d446b6ca588a6061ef --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW28.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e177e6d652d2ddfba78dc03591ef1a9251836e71f79856c8ffe15d1d49dc62bb +size 70165045 diff --git a/assays/betalain_LCMS_quantification/dataset/TW31.mzML b/assays/betalain_LCMS_quantification/dataset/TW31.mzML new file mode 100755 index 0000000000000000000000000000000000000000..01c112a4bd5af5d1e3f0841c9406d476a9813d74 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW31.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7889ad570957fb136bc79d7846325feb801f4fbc152a0442fc172bde0a55920c +size 72362527 diff --git a/assays/betalain_LCMS_quantification/dataset/TW34.mzML b/assays/betalain_LCMS_quantification/dataset/TW34.mzML new file mode 100755 index 0000000000000000000000000000000000000000..1b459098bd74e8ad64792d9ca5c1e4ba2e438a03 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW34.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:29705a72346344873506f530d241e340c44ccbcefcfe043fa728b3a8ce68920d +size 72339233 diff --git a/assays/betalain_LCMS_quantification/dataset/TW37.mzML b/assays/betalain_LCMS_quantification/dataset/TW37.mzML new file mode 100755 index 0000000000000000000000000000000000000000..9c365831db8dea996d7a4c070b3bff87a0383376 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW37.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f01f77f5fea64b60d8ad6b85abe21f3b9988f6c440c33a3fa9c861ea98a7c938 +size 67346113 diff --git a/assays/betalain_LCMS_quantification/dataset/TW4.mzML b/assays/betalain_LCMS_quantification/dataset/TW4.mzML new file mode 100755 index 0000000000000000000000000000000000000000..0676076c22237937f7189b783b323964431f0a33 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW4.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d0c88276ddb7f82faec3b67bf07cbdcafeaf596fd642db4fb9b09bc0bdc460e5 +size 67556015 diff --git a/assays/betalain_LCMS_quantification/dataset/TW40.mzML b/assays/betalain_LCMS_quantification/dataset/TW40.mzML new file mode 100755 index 0000000000000000000000000000000000000000..08e3c48b07df0be316bcb6db5416747dc028bb86 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW40.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd2e174ce16bd9fd07878dca54d7676481b76c11f83578ed82dd408dc0eabdfb +size 66078504 diff --git a/assays/betalain_LCMS_quantification/dataset/TW43.mzML b/assays/betalain_LCMS_quantification/dataset/TW43.mzML new file mode 100755 index 0000000000000000000000000000000000000000..83888d82ea3e89131ec9e085fac6cabd68541cdb --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW43.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ebf669220dc77df14cb72656d6cff4efc3850c8c99e2f6ad4908d80931c320a0 +size 66427590 diff --git a/assays/betalain_LCMS_quantification/dataset/TW46.mzML b/assays/betalain_LCMS_quantification/dataset/TW46.mzML new file mode 100755 index 0000000000000000000000000000000000000000..ec31613bbcb354a0d48d05a8ebea251de0ed4917 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW46.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef892a6e8cf1d037a588cb2678e5aa6e668539dbb214bec38a69e57bfb48645a +size 65433016 diff --git a/assays/betalain_LCMS_quantification/dataset/TW50.mzML b/assays/betalain_LCMS_quantification/dataset/TW50.mzML new file mode 100755 index 0000000000000000000000000000000000000000..c8882e0562691553c26749bc2a089a2c19cdcda8 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW50.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fd0459960156ef7f5c243d03b966b4bf24369f1d4b37cedf3d4a07bbe3c2e265 +size 64838418 diff --git a/assays/betalain_LCMS_quantification/dataset/TW51.mzML b/assays/betalain_LCMS_quantification/dataset/TW51.mzML new file mode 100755 index 0000000000000000000000000000000000000000..82385524934582ab0f2a1798db22a45051c4dc69 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW51.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:82ad7bd8a6818a2edb567e893e71ead7d6f05fde8b219d8bf0d7667e785303ce +size 61632397 diff --git a/assays/betalain_LCMS_quantification/dataset/TW52.mzML b/assays/betalain_LCMS_quantification/dataset/TW52.mzML new file mode 100755 index 0000000000000000000000000000000000000000..ea67769c865e76daebc24326adadc57e90102f51 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW52.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5335c923bb2ab543b3e29fd15840e5ac8b14b53e1c24835e13a38dbafa13e951 +size 69814233 diff --git a/assays/betalain_LCMS_quantification/dataset/TW53.mzML b/assays/betalain_LCMS_quantification/dataset/TW53.mzML new file mode 100755 index 0000000000000000000000000000000000000000..e23808c7520e187c6c313c26ec6214f558ff772d --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW53.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:42c566e63cc1def3f9dee87fb674028e09af636fa0f9ed63adaa757a5c05d6dd +size 69814233 diff --git a/assays/betalain_LCMS_quantification/dataset/TW54.mzML b/assays/betalain_LCMS_quantification/dataset/TW54.mzML new file mode 100755 index 0000000000000000000000000000000000000000..a72950572f9fb5afb2889c631bea36f90cd1f608 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW54.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b85aaddfc84f2ce428f1bbde2ecd09c19ad04ad5c5241cbf9a91dc2280ae2628 +size 73953622 diff --git a/assays/betalain_LCMS_quantification/dataset/TW55.mzML b/assays/betalain_LCMS_quantification/dataset/TW55.mzML new file mode 100755 index 0000000000000000000000000000000000000000..dce10f3fc051f2f6c2db6ac5f82d665261d3220a --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW55.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ad0ccba55559032de9c9f359a768eae8e2f74b1a40dc21f7b664cdf045280cc1 +size 58163530 diff --git a/assays/betalain_LCMS_quantification/dataset/TW56.mzML b/assays/betalain_LCMS_quantification/dataset/TW56.mzML new file mode 100755 index 0000000000000000000000000000000000000000..6598e3f7f7d0256a50b6fbe46aa39415d5e1f5af --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW56.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34228f8ec577e5007dea1dbfdd590b70e3df911b5ca0a16213d590ca085d2147 +size 62659339 diff --git a/assays/betalain_LCMS_quantification/dataset/TW57.mzML b/assays/betalain_LCMS_quantification/dataset/TW57.mzML new file mode 100755 index 0000000000000000000000000000000000000000..5a2a46290973e7433cb00f1dfb9b882c3bb9e418 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW57.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c7b46ec88a2c11c3081943d6d898771ecba59573d0d12606b6fc193a0166cb8b +size 69917783 diff --git a/assays/betalain_LCMS_quantification/dataset/TW58.mzML b/assays/betalain_LCMS_quantification/dataset/TW58.mzML new file mode 100755 index 0000000000000000000000000000000000000000..e06d5f162fb2a186bf8fc5472e30913a32a1a519 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW58.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46d774739ed4b61356efd8aac1c67fe2584e3fb222453b43e4b1b9977f028907 +size 66423249 diff --git a/assays/betalain_LCMS_quantification/dataset/TW59.mzML b/assays/betalain_LCMS_quantification/dataset/TW59.mzML new file mode 100755 index 0000000000000000000000000000000000000000..e3f75894d75b7c39df33af467b0c01fccff03b81 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW59.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:58fd196d7edbb90a6d3d420b583369ed7c180d66c1ee109859b8e6d94011aeec +size 65805663 diff --git a/assays/betalain_LCMS_quantification/dataset/TW60.mzML b/assays/betalain_LCMS_quantification/dataset/TW60.mzML new file mode 100755 index 0000000000000000000000000000000000000000..d7efd4b8d56f7269067fc6aeda764c2f299a95f9 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW60.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:09dc75fac2eb233d19fd994a1c037a86079ec166b4fd659563e5b0ebf7d3e7d7 +size 64623671 diff --git a/assays/betalain_LCMS_quantification/dataset/TW61.mzML b/assays/betalain_LCMS_quantification/dataset/TW61.mzML new file mode 100755 index 0000000000000000000000000000000000000000..331537275e31cf338c4105dab04c55617dfbda10 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW61.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9808b9fc353d967a3acd87fc670d76e6cecd4181228b4810960894bcf1424397 +size 66070937 diff --git a/assays/betalain_LCMS_quantification/dataset/TW62.mzML b/assays/betalain_LCMS_quantification/dataset/TW62.mzML new file mode 100755 index 0000000000000000000000000000000000000000..b56f696affdeb97f6729a78e84d0d4ece5741ebb --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW62.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b2ad083002ff47d04d14e524929788c42bc710fcf64b829aef41e0c2951e8430 +size 65359805 diff --git a/assays/betalain_LCMS_quantification/dataset/TW63.mzML b/assays/betalain_LCMS_quantification/dataset/TW63.mzML new file mode 100755 index 0000000000000000000000000000000000000000..6f36b44110caff648b490a31a4f77d9297f2a2d7 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW63.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:399b06f4ab1d765dd3427b77d6a3ab4c8f285882a819839d4d0925286c7966e2 +size 71247773 diff --git a/assays/betalain_LCMS_quantification/dataset/TW7.mzML b/assays/betalain_LCMS_quantification/dataset/TW7.mzML new file mode 100755 index 0000000000000000000000000000000000000000..db01c18d1e30faab0ffa8b70580c1164e60086c0 --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TW7.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0f59d000496e11acc859d6c27cccc180544656f5de65f4578e425976c673d680 +size 68177499 diff --git a/assays/betalain_LCMS_quantification/dataset/TWBlank.mzML b/assays/betalain_LCMS_quantification/dataset/TWBlank.mzML new file mode 100755 index 0000000000000000000000000000000000000000..7c0347fe76e78dc70b93fa7f0d6485c8327dbc2a --- /dev/null +++ b/assays/betalain_LCMS_quantification/dataset/TWBlank.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b11faeba0a765bddb1739d9ff481ad01b8ca7ea9d969fef6c2ced428cbcd6e99 +size 55586822 diff --git a/assays/betalain_LCMS_quantification/isa.assay.xlsx b/assays/betalain_LCMS_quantification/isa.assay.xlsx index 9e0d0abecaa4552bf7c0ba77b2c6e236667184ca..8c8ad7032c492a820f911df12ac785f1e77d3ddd 100644 Binary files a/assays/betalain_LCMS_quantification/isa.assay.xlsx and b/assays/betalain_LCMS_quantification/isa.assay.xlsx differ diff --git a/assays/betalain_LCMS_quantification_hairy_roots/README.md b/assays/betalain_LCMS_quantification_hairy_roots/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/.gitkeep b/assays/betalain_LCMS_quantification_hairy_roots/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/Betalain_quantification_summary.xlsx b/assays/betalain_LCMS_quantification_hairy_roots/dataset/Betalain_quantification_summary.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..8e9aa402f14390acd07b162d6555c5e0a0c09196 Binary files /dev/null and b/assays/betalain_LCMS_quantification_hairy_roots/dataset/Betalain_quantification_summary.xlsx differ diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_4.mzML b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_4.mzML new file mode 100755 index 0000000000000000000000000000000000000000..6bc860a7b61dd9a45f8042e2e4eb6a2f2d60e8fa --- /dev/null +++ b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_4.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8038c97fee058ffc6aeb1cecd8edeeea6125cabe4d93c9412f6a5c8847297d66 +size 117448452 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_5.mzML b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_5.mzML new file mode 100755 index 0000000000000000000000000000000000000000..e42799e60e4b3a03c0834bab6a6fa9951f513400 --- /dev/null +++ b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_5.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3efd9afe429f73096eafbe38d8e4ee21dcce6b218742c9fef8d38e4ff3b84ca6 +size 119978548 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_7.mzML b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_7.mzML new file mode 100755 index 0000000000000000000000000000000000000000..262cfef90b9dc2938591076bbc1108474771f43f --- /dev/null +++ b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_7.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d839a3f4404a2d026b57bb4d3b67315825193f93bc4dfff846f67fb5967b4fc +size 111257208 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_8.mzML b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_8.mzML new file mode 100755 index 0000000000000000000000000000000000000000..695316b07c25cd3956c59b17e91946717deb48a9 --- /dev/null +++ b/assays/betalain_LCMS_quantification_hairy_roots/dataset/TW_Root_8.mzML @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2e4dd7f85bd525d81fd0fa5002a0a052670d953b8270b99224ecbc57a9bfea7b +size 120666681 diff --git a/assays/betalain_LCMS_quantification_hairy_roots/isa.assay.xlsx b/assays/betalain_LCMS_quantification_hairy_roots/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..1445f66ea012e7865247060492e8d68d2b2e2bdb Binary files /dev/null and b/assays/betalain_LCMS_quantification_hairy_roots/isa.assay.xlsx differ diff --git a/assays/betalain_LCMS_quantification_hairy_roots/protocols/.gitkeep b/assays/betalain_LCMS_quantification_hairy_roots/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/betalain_photometric_quantification/isa.assay.xlsx b/assays/betalain_photometric_quantification/isa.assay.xlsx index c96aae7ded6b909f32cc470cc4367b113aa2f45c..05e9ff21acc98d525d047f911e604f0abd36d92f 100644 Binary files a/assays/betalain_photometric_quantification/isa.assay.xlsx and b/assays/betalain_photometric_quantification/isa.assay.xlsx differ diff --git a/assays/isoform_sequencing/isa.assay.xlsx b/assays/isoform_sequencing/isa.assay.xlsx index c1cb811de15511a506675c28066597a58b02cdbb..bfc82eb838627febaddec37d1800426d4dd93fa3 100644 Binary files a/assays/isoform_sequencing/isa.assay.xlsx and b/assays/isoform_sequencing/isa.assay.xlsx differ diff --git a/assays/microscopy_leek_epidermis/isa.assay.xlsx b/assays/microscopy_leek_epidermis/isa.assay.xlsx index 5ac449ed0a5a3ee0165182eb6075867009e94134..4b255b0f2913b2dd0620eaa62a65cac3e2285565 100644 Binary files a/assays/microscopy_leek_epidermis/isa.assay.xlsx and b/assays/microscopy_leek_epidermis/isa.assay.xlsx differ diff --git a/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx b/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx index 97bcb43ea46d3e03965018cbae5639445fa801c8..468b41c366c628f2bce513682817f83f8db0fed2 100644 Binary files a/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx and b/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx differ diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index b5241aec8f65bed1a81ab46aa37b36f0d0330b64..a8330cb80fe647507944f69aded555d1f9f5feee 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/studies/BSA_parent_betalain_quant/isa.study.xlsx b/studies/BSA_parent_betalain_quant/isa.study.xlsx index 66d3291a080501cc14b8c3b4c67a963730f09dc1..110c16bf45477df433a500d74baf0434082e5754 100644 Binary files a/studies/BSA_parent_betalain_quant/isa.study.xlsx and b/studies/BSA_parent_betalain_quant/isa.study.xlsx differ diff --git a/studies/Bulk_segregant_analysis/isa.study.xlsx b/studies/Bulk_segregant_analysis/isa.study.xlsx index 15c82f2f2586e9eb5c7424b50d5a61ff8f779e03..52f3eccbdb94cdb74190c9b1bb416addaa8bed63 100644 Binary files a/studies/Bulk_segregant_analysis/isa.study.xlsx and b/studies/Bulk_segregant_analysis/isa.study.xlsx differ diff --git a/studies/additional_data/isa.study.xlsx b/studies/additional_data/isa.study.xlsx index bf25959811ec234a8ef4d545b461526c97fbf0a8..67365166d34e39213f7da12f3d35a55326e1fb59 100644 Binary files a/studies/additional_data/isa.study.xlsx and b/studies/additional_data/isa.study.xlsx differ diff --git a/studies/hairy_root_transformation/isa.study.xlsx b/studies/hairy_root_transformation/isa.study.xlsx index 82afa1214a37ab1cf51d4345e6e6a83edda0388a..8ff8ae2c943edc41c8994cfaf795a37bc012690c 100644 Binary files a/studies/hairy_root_transformation/isa.study.xlsx and b/studies/hairy_root_transformation/isa.study.xlsx differ diff --git a/studies/isoform_sequencing/isa.study.xlsx b/studies/isoform_sequencing/isa.study.xlsx index 1180fed06ed995e3c998785884c8b03267cf0cb9..1df91a4fec5f4eb0112dfb0f6639b21d886ebac3 100644 Binary files a/studies/isoform_sequencing/isa.study.xlsx and b/studies/isoform_sequencing/isa.study.xlsx differ diff --git a/studies/leek_epidermis_bombardment/isa.study.xlsx b/studies/leek_epidermis_bombardment/isa.study.xlsx index 68dc08e62ccb363910447c45658f997133c783ed..b36ba6f9540a579369988eee30700c476fa924e4 100644 Binary files a/studies/leek_epidermis_bombardment/isa.study.xlsx and b/studies/leek_epidermis_bombardment/isa.study.xlsx differ