From c73047aa8ff5c51e2dff4139c51b4712411af892 Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Thu, 14 Nov 2024 11:19:33 +0100
Subject: [PATCH] remove cwl examples from main

---
 runs/heatmap-run/job.yml       |  4 ----
 workflows/heatmap/heatmap.py   | 19 -------------------
 workflows/heatmap/workflow.cwl | 29 -----------------------------
 3 files changed, 52 deletions(-)
 delete mode 100644 runs/heatmap-run/job.yml
 delete mode 100644 workflows/heatmap/heatmap.py
 delete mode 100644 workflows/heatmap/workflow.cwl

diff --git a/runs/heatmap-run/job.yml b/runs/heatmap-run/job.yml
deleted file mode 100644
index 0117e64..0000000
--- a/runs/heatmap-run/job.yml
+++ /dev/null
@@ -1,4 +0,0 @@
-MeasurementTableCSV:
-    class: File
-    path: ../../assays/SugarMeasurement/dataset/sugar_result.csv
-FigureFileName: heatmap
\ No newline at end of file
diff --git a/workflows/heatmap/heatmap.py b/workflows/heatmap/heatmap.py
deleted file mode 100644
index facb405..0000000
--- a/workflows/heatmap/heatmap.py
+++ /dev/null
@@ -1,19 +0,0 @@
-import pandas as pd
-import plotly.express as px
-import sys
-
-# Read command line arguments
-MeasurementTableCSV=sys.argv[1]
-FigureFileName=sys.argv[2]
-
-# Read the CSV file
-data = pd.read_csv(MeasurementTableCSV, index_col=0, on_bad_lines='skip')
-
-# Create a heatmap
-fig = px.imshow(data, 
-                labels=dict(x="Columns", y="Rows", color="Value"),
-                x=data.columns, 
-                y=data.index)
-
-# Save heatmap to file
-fig.write_image(FigureFileName + ".svg")
diff --git a/workflows/heatmap/workflow.cwl b/workflows/heatmap/workflow.cwl
deleted file mode 100644
index 5ccb946..0000000
--- a/workflows/heatmap/workflow.cwl
+++ /dev/null
@@ -1,29 +0,0 @@
-#!/usr/bin/env cwl-runner
-
-cwlVersion: v1.2
-class: CommandLineTool
-requirements:
-  - class: InitialWorkDirRequirement
-    listing:
-      - entryname: heatmap.py
-        entry:
-          $include: heatmap.py
-  - class: NetworkAccess
-    networkAccess: true
-baseCommand: [python3, heatmap.py]
-inputs:
-  MeasurementTableCSV:
-    type: File
-    inputBinding:
-      position: 1
-  FigureFileName:
-    type: string
-    inputBinding:
-      position: 2
-
-outputs:
-  output:
-    type: File
-    outputBinding:
-      glob: "*.svg"
-
-- 
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