diff --git a/workflows/genetic_diversity/hierfstats/plots/fst.txt b/workflows/genetic_diversity/hierfstats/plots/fst.txt
new file mode 100644
index 0000000000000000000000000000000000000000..408c1b6941c884917803d77cd0d4444157850457
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/fst.txt
@@ -0,0 +1,5 @@
+$FST
+[1] 0.02632264
+
+$FIS
+[1] -0.6779031
diff --git a/workflows/genetic_diversity/hierfstats/plots/genetic_diversity_report.txt b/workflows/genetic_diversity/hierfstats/plots/genetic_diversity_report.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2903b6aa3658937ba50c8a83bb47ddd3a42a3591
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/genetic_diversity_report.txt
@@ -0,0 +1,10 @@
+overall
+ Ho Hs Ht Dst Htp Dstp Fst Fstp Fis Dest
+0.0995 0.1496 0.2349 0.0853 0.2494 0.0997 0.3630 0.4000 0.3348 0.1173
+
+> wc(all_taxa_hier, diploid = T) # Fst
+$FST
+[1] 0.1511514
+
+$FIS
+[1] 0.342144
diff --git a/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot.png b/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot.png
new file mode 100644
index 0000000000000000000000000000000000000000..4bacdf64b1192d476716449754beff38040921fa
Binary files /dev/null and b/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot.png differ
diff --git a/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot_cols_ecogeo_paper.png b/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot_cols_ecogeo_paper.png
new file mode 100644
index 0000000000000000000000000000000000000000..6424cb9b7f5dca1ab16685c9a6cf2ce21227cceb
Binary files /dev/null and b/workflows/genetic_diversity/hierfstats/plots/genotype_pca_plot_cols_ecogeo_paper.png differ
diff --git a/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions.txt b/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd23f9bdd75ab48c351a241cb5014e345ef951b4
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions.txt
@@ -0,0 +1,7 @@
+ parviglumis mexicana diploperennis huehuetenangensis luxurians nicaraguensis
+mexicana 0.0647
+diploperennis 0.2929 0.2951
+huehuetenangensis 0.2441 0.2435 0.4172
+luxurians 0.3236 0.3453 0.4023 0.4387
+nicaraguensis 0.3678 0.3858 0.4500 0.4879 0.1540
+perennis 0.2395 0.2454 0.1958 0.3879 0.3902 0.4419
diff --git a/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions_10.04.2022.txt b/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions_10.04.2022.txt
new file mode 100644
index 0000000000000000000000000000000000000000..df858453f2f4426eab0bba1653167fe2020b9527
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/nei87_all_accessions_10.04.2022.txt
@@ -0,0 +1,7 @@
+ parviglumis mexicana diploperennis huehuetenangensis luxurians nicaraguensis
+mexicana 0.0793
+diploperennis 0.3314 0.3551
+huehuetenangensis 0.2671 0.2798 0.5558
+luxurians 0.3742 0.4288 0.6025 0.5916
+nicaraguensis 0.4081 0.4641 0.6593 0.6424 0.2594
+perennis 0.2570 0.2785 0.2333 0.4714 0.5122 0.5677
diff --git a/workflows/genetic_diversity/hierfstats/plots/scree_gbs_pca_plot.png b/workflows/genetic_diversity/hierfstats/plots/scree_gbs_pca_plot.png
new file mode 100644
index 0000000000000000000000000000000000000000..170541f3cad4bc77b068aebbe9e514dca5de2125
Binary files /dev/null and b/workflows/genetic_diversity/hierfstats/plots/scree_gbs_pca_plot.png differ
diff --git a/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions.txt b/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions.txt
new file mode 100644
index 0000000000000000000000000000000000000000..bd23f9bdd75ab48c351a241cb5014e345ef951b4
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions.txt
@@ -0,0 +1,7 @@
+ parviglumis mexicana diploperennis huehuetenangensis luxurians nicaraguensis
+mexicana 0.0647
+diploperennis 0.2929 0.2951
+huehuetenangensis 0.2441 0.2435 0.4172
+luxurians 0.3236 0.3453 0.4023 0.4387
+nicaraguensis 0.3678 0.3858 0.4500 0.4879 0.1540
+perennis 0.2395 0.2454 0.1958 0.3879 0.3902 0.4419
diff --git a/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions_10.04.2022.txt b/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions_10.04.2022.txt
new file mode 100644
index 0000000000000000000000000000000000000000..87100161a8e66bd886805a45abbe885800f14de8
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/plots/wc84_all_accessions_10.04.2022.txt
@@ -0,0 +1,7 @@
+ parviglumis mexicana diploperennis huehuetenangensis luxurians nicaraguensis
+mexicana 0.07898243
+diploperennis 0.24983788 0.27567151
+huehuetenangensis 0.20813918 0.22350084 0.58062969
+luxurians 0.27477581 0.32803427 0.59599571 0.61633934
+nicaraguensis 0.27590292 0.32732935 0.60467012 0.59600914 0.22659894
+perennis 0.20173548 0.22498253 0.23963243 0.47156094 0.51378722 0.49157560
diff --git a/workflows/genetic_diversity/hierfstats/scripts/figtree_annotation_2.txt b/workflows/genetic_diversity/hierfstats/scripts/figtree_annotation_2.txt
new file mode 100644
index 0000000000000000000000000000000000000000..b62344f29dea24ddba2666cc3eed01b9153476ee
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/figtree_annotation_2.txt
@@ -0,0 +1,3604 @@
+parviglumis_BIXC_100_10 parviglumis BIXC
+parviglumis_BIXC_100_11 parviglumis BIXC
+parviglumis_BIXC_100_12 parviglumis BIXC
+parviglumis_BIXC_100_13 parviglumis BIXC
+parviglumis_BIXC_100_15 parviglumis BIXC
+parviglumis_BIXC_100_1 parviglumis BIXC
+parviglumis_BIXC_100_2 parviglumis BIXC
+parviglumis_BIXC_100_3 parviglumis BIXC
+parviglumis_BIXC_100_4 parviglumis BIXC
+parviglumis_BIXC_100_5 parviglumis BIXC
+parviglumis_BIXC_100_7 parviglumis BIXC
+parviglumis_BIXC_100_8 parviglumis BIXC
+parviglumis_BIXC_100_9 parviglumis BIXC
+parviglumis_BIXC_101_10 parviglumis BIXC
+parviglumis_BIXC_101_11 parviglumis BIXC
+parviglumis_BIXC_101_12 parviglumis BIXC
+parviglumis_BIXC_101_13 parviglumis BIXC
+parviglumis_BIXC_101_14 parviglumis BIXC
+parviglumis_BIXC_101_15 parviglumis BIXC
+parviglumis_BIXC_101_1 parviglumis BIXC
+parviglumis_BIXC_101_2 parviglumis BIXC
+parviglumis_BIXC_101_3 parviglumis BIXC
+parviglumis_BIXC_101_4 parviglumis BIXC
+parviglumis_BIXC_101_5 parviglumis BIXC
+parviglumis_BIXC_101_6 parviglumis BIXC
+parviglumis_BIXC_101_7 parviglumis BIXC
+parviglumis_BIXC_101_8 parviglumis BIXC
+parviglumis_BIXC_101_9 parviglumis BIXC
+parviglumis_BZAC_102_11 parviglumis BZAC
+parviglumis_BZAC_102_12 parviglumis BZAC
+parviglumis_BZAC_102_13 parviglumis BZAC
+parviglumis_BZAC_102_14 parviglumis BZAC
+parviglumis_BZAC_102_15 parviglumis BZAC
+parviglumis_BZAC_102_1 parviglumis BZAC
+parviglumis_BZAC_102_2 parviglumis BZAC
+parviglumis_BZAC_102_4 parviglumis BZAC
+parviglumis_BZAC_102_5 parviglumis BZAC
+parviglumis_BZAC_102_6 parviglumis BZAC
+parviglumis_BZAC_102_7 parviglumis BZAC
+parviglumis_BZAC_102_8 parviglumis BZAC
+parviglumis_BZAC_102_9 parviglumis BZAC
+parviglumis_BIXC_103_10 parviglumis BIXC
+parviglumis_BIXC_103_11 parviglumis BIXC
+parviglumis_BIXC_103_12 parviglumis BIXC
+parviglumis_BIXC_103_13 parviglumis BIXC
+parviglumis_BIXC_103_14 parviglumis BIXC
+parviglumis_BIXC_103_15 parviglumis BIXC
+parviglumis_BIXC_103_1 parviglumis BIXC
+parviglumis_BIXC_103_2 parviglumis BIXC
+parviglumis_BIXC_103_3 parviglumis BIXC
+parviglumis_BIXC_103_4 parviglumis BIXC
+parviglumis_BIXC_103_5 parviglumis BIXC
+parviglumis_BIXC_103_6 parviglumis BIXC
+parviglumis_BIXC_103_7 parviglumis BIXC
+parviglumis_BIXC_103_8 parviglumis BIXC
+parviglumis_BIXC_103_9 parviglumis BIXC
+parviglumis_BZAC_104_10 parviglumis BZAC
+parviglumis_BZAC_104_11 parviglumis BZAC
+parviglumis_BZAC_104_12 parviglumis BZAC
+parviglumis_BZAC_104_13 parviglumis BZAC
+parviglumis_BZAC_104_14 parviglumis BZAC
+parviglumis_BZAC_104_1 parviglumis BZAC
+parviglumis_BZAC_104_2 parviglumis BZAC
+parviglumis_BZAC_104_3 parviglumis BZAC
+parviglumis_BZAC_104_4 parviglumis BZAC
+parviglumis_BZAC_104_5 parviglumis BZAC
+parviglumis_BZAC_104_6 parviglumis BZAC
+parviglumis_BZAC_104_7 parviglumis BZAC
+parviglumis_BZAC_104_8 parviglumis BZAC
+parviglumis_BZAC_104_9 parviglumis BZAC
+parviglumis_BZAC_105_10 parviglumis BZAC
+parviglumis_BZAC_105_11 parviglumis BZAC
+parviglumis_BZAC_105_12 parviglumis BZAC
+parviglumis_BZAC_105_13 parviglumis BZAC
+parviglumis_BZAC_105_14 parviglumis BZAC
+parviglumis_BZAC_105_15 parviglumis BZAC
+parviglumis_BZAC_105_1 parviglumis BZAC
+parviglumis_BZAC_105_2 parviglumis BZAC
+parviglumis_BZAC_105_3 parviglumis BZAC
+parviglumis_BZAC_105_4 parviglumis BZAC
+parviglumis_BZAC_105_5 parviglumis BZAC
+parviglumis_BZAC_105_6 parviglumis BZAC
+parviglumis_BZAC_105_7 parviglumis BZAC
+parviglumis_BZAC_105_9 parviglumis BZAC
+parviglumis_BZAC_106_10 parviglumis BZAC
+parviglumis_BZAC_106_11 parviglumis BZAC
+parviglumis_BZAC_106_12 parviglumis BZAC
+parviglumis_BZAC_106_13 parviglumis BZAC
+parviglumis_BZAC_106_14 parviglumis BZAC
+parviglumis_BZAC_106_15 parviglumis BZAC
+parviglumis_BZAC_106_3 parviglumis BZAC
+parviglumis_BZAC_106_5 parviglumis BZAC
+parviglumis_BZAC_106_6 parviglumis BZAC
+parviglumis_BZAC_106_7 parviglumis BZAC
+parviglumis_BZAC_106_8 parviglumis BZAC
+parviglumis_BZAC_107_10 parviglumis BZAC
+parviglumis_BZAC_107_11 parviglumis BZAC
+parviglumis_BZAC_107_12 parviglumis BZAC
+parviglumis_BZAC_107_13 parviglumis BZAC
+parviglumis_BZAC_107_14 parviglumis BZAC
+parviglumis_BZAC_107_15 parviglumis BZAC
+parviglumis_BZAC_107_16 parviglumis BZAC
+parviglumis_BZAC_107_17 parviglumis BZAC
+parviglumis_BZAC_107_18 parviglumis BZAC
+parviglumis_BZAC_107_19 parviglumis BZAC
+parviglumis_BZAC_107_1 parviglumis BZAC
+parviglumis_BZAC_107_20 parviglumis BZAC
+parviglumis_BZAC_107_21 parviglumis BZAC
+parviglumis_BZAC_107_22 parviglumis BZAC
+parviglumis_BZAC_107_23 parviglumis BZAC
+parviglumis_BZAC_107_24 parviglumis BZAC
+parviglumis_BZAC_107_25 parviglumis BZAC
+parviglumis_BZAC_107_26 parviglumis BZAC
+parviglumis_BZAC_107_27 parviglumis BZAC
+parviglumis_BZAC_107_28 parviglumis BZAC
+parviglumis_BZAC_107_29 parviglumis BZAC
+parviglumis_BZAC_107_2 parviglumis BZAC
+parviglumis_BZAC_107_30 parviglumis BZAC
+parviglumis_BZAC_107_3 parviglumis BZAC
+parviglumis_BZAC_107_4 parviglumis BZAC
+parviglumis_BZAC_107_5 parviglumis BZAC
+parviglumis_BZAC_107_6 parviglumis BZAC
+parviglumis_BZAC_107_7 parviglumis BZAC
+parviglumis_BZAC_107_8 parviglumis BZAC
+parviglumis_BZAC_107_9 parviglumis BZAC
+parviglumis_BZAC_108_10 parviglumis BZAC
+parviglumis_BZAC_108_11 parviglumis BZAC
+parviglumis_BZAC_108_12 parviglumis BZAC
+parviglumis_BZAC_108_13 parviglumis BZAC
+parviglumis_BZAC_108_15 parviglumis BZAC
+parviglumis_BZAC_108_1 parviglumis BZAC
+parviglumis_BZAC_108_2 parviglumis BZAC
+parviglumis_BZAC_108_3 parviglumis BZAC
+parviglumis_BZAC_108_4 parviglumis BZAC
+parviglumis_BZAC_108_5 parviglumis BZAC
+parviglumis_BZAC_108_6 parviglumis BZAC
+parviglumis_BZAC_108_7 parviglumis BZAC
+parviglumis_BZAC_108_8 parviglumis BZAC
+parviglumis_BZAC_108_9 parviglumis BZAC
+parviglumis_BTEL_109_10 parviglumis BTEL
+parviglumis_BTEL_109_11 parviglumis BTEL
+parviglumis_BTEL_109_12 parviglumis BTEL
+parviglumis_BTEL_109_13 parviglumis BTEL
+parviglumis_BTEL_109_14 parviglumis BTEL
+parviglumis_BTEL_109_15 parviglumis BTEL
+parviglumis_BTEL_109_1 parviglumis BTEL
+parviglumis_BTEL_109_2 parviglumis BTEL
+parviglumis_BTEL_109_3 parviglumis BTEL
+parviglumis_BTEL_109_4 parviglumis BTEL
+parviglumis_BTEL_109_5 parviglumis BTEL
+parviglumis_BTEL_109_6 parviglumis BTEL
+parviglumis_BTEL_109_7 parviglumis BTEL
+parviglumis_BTEL_109_8 parviglumis BTEL
+mexicana_NDUR_10_10 mexicana NDUR
+mexicana_NDUR_10_11 mexicana NDUR
+mexicana_NDUR_10_12 mexicana NDUR
+mexicana_NDUR_10_13 mexicana NDUR
+mexicana_NDUR_10_14 mexicana NDUR
+mexicana_NDUR_10_15 mexicana NDUR
+mexicana_NDUR_10_16 mexicana NDUR
+mexicana_NDUR_10_1758 mexicana NDUR
+mexicana_NDUR_10_18 mexicana NDUR
+mexicana_NDUR_10_1 mexicana NDUR
+mexicana_NDUR_10_20 mexicana NDUR
+mexicana_NDUR_10_21 mexicana NDUR
+mexicana_NDUR_10_22 mexicana NDUR
+mexicana_NDUR_10_23 mexicana NDUR
+mexicana_NDUR_10_24 mexicana NDUR
+mexicana_NDUR_10_25 mexicana NDUR
+mexicana_NDUR_10_26 mexicana NDUR
+mexicana_NDUR_10_28 mexicana NDUR
+mexicana_NDUR_10_29 mexicana NDUR
+mexicana_NDUR_10_2 mexicana NDUR
+mexicana_NDUR_10_30 mexicana NDUR
+mexicana_NDUR_10_3 mexicana NDUR
+mexicana_NDUR_10_4 mexicana NDUR
+mexicana_NDUR_10_5 mexicana NDUR
+mexicana_NDUR_10_6 mexicana NDUR
+mexicana_NDUR_10_7 mexicana NDUR
+mexicana_NDUR_10_8 mexicana NDUR
+mexicana_NDUR_10_9 mexicana NDUR
+parviglumis_BZAC_110_10 parviglumis BZAC
+parviglumis_BZAC_110_11 parviglumis BZAC
+parviglumis_BZAC_110_12 parviglumis BZAC
+parviglumis_BZAC_110_13 parviglumis BZAC
+parviglumis_BZAC_110_14 parviglumis BZAC
+parviglumis_BZAC_110_15 parviglumis BZAC
+parviglumis_BZAC_110_1 parviglumis BZAC
+parviglumis_BZAC_110_2 parviglumis BZAC
+parviglumis_BZAC_110_3 parviglumis BZAC
+parviglumis_BZAC_110_4 parviglumis BZAC
+parviglumis_BZAC_110_5 parviglumis BZAC
+parviglumis_BZAC_110_6 parviglumis BZAC
+parviglumis_BZAC_110_7 parviglumis BZAC
+parviglumis_BZAC_110_8 parviglumis BZAC
+parviglumis_BZAC_111_10 parviglumis BZAC
+parviglumis_BZAC_111_12 parviglumis BZAC
+parviglumis_BZAC_111_13 parviglumis BZAC
+parviglumis_BZAC_111_15 parviglumis BZAC
+parviglumis_BZAC_111_1 parviglumis BZAC
+parviglumis_BZAC_111_2 parviglumis BZAC
+parviglumis_BZAC_111_3 parviglumis BZAC
+parviglumis_BZAC_111_5 parviglumis BZAC
+parviglumis_BZAC_111_6 parviglumis BZAC
+parviglumis_BZAC_111_7 parviglumis BZAC
+parviglumis_BZAC_111_8 parviglumis BZAC
+parviglumis_BZAC_111_9 parviglumis BZAC
+parviglumis_BTEL_112_10 parviglumis BTEL
+parviglumis_BTEL_112_11 parviglumis BTEL
+parviglumis_BTEL_112_12 parviglumis BTEL
+parviglumis_BTEL_112_13 parviglumis BTEL
+parviglumis_BTEL_112_14 parviglumis BTEL
+parviglumis_BTEL_112_15 parviglumis BTEL
+parviglumis_BTEL_112_1 parviglumis BTEL
+parviglumis_BTEL_112_2 parviglumis BTEL
+parviglumis_BTEL_112_3 parviglumis BTEL
+parviglumis_BTEL_112_4 parviglumis BTEL
+parviglumis_BTEL_112_5 parviglumis BTEL
+parviglumis_BTEL_112_6 parviglumis BTEL
+parviglumis_BTEL_112_7 parviglumis BTEL
+parviglumis_BTEL_112_8 parviglumis BTEL
+parviglumis_BTEL_112_9 parviglumis BTEL
+parviglumis_BTEL_113_13 parviglumis BTEL
+parviglumis_BTEL_113_15 parviglumis BTEL
+parviglumis_BTEL_113_1 parviglumis BTEL
+parviglumis_BTEL_113_2 parviglumis BTEL
+parviglumis_BTEL_113_3 parviglumis BTEL
+parviglumis_BTEL_113_4 parviglumis BTEL
+parviglumis_BTEL_113_5 parviglumis BTEL
+parviglumis_BTEL_113_6 parviglumis BTEL
+parviglumis_BTEL_113_8 parviglumis BTEL
+parviglumis_BTEL_113_9 parviglumis BTEL
+parviglumis_BAPX_114_10 parviglumis BAPX
+parviglumis_BAPX_114_11 parviglumis BAPX
+parviglumis_BAPX_114_12 parviglumis BAPX
+parviglumis_BAPX_114_15 parviglumis BAPX
+parviglumis_BAPX_114_1 parviglumis BAPX
+parviglumis_BAPX_114_2 parviglumis BAPX
+parviglumis_BAPX_114_3 parviglumis BAPX
+parviglumis_BAPX_114_4 parviglumis BAPX
+parviglumis_BAPX_114_5 parviglumis BAPX
+parviglumis_BAPX_114_6 parviglumis BAPX
+parviglumis_BAPX_114_7 parviglumis BAPX
+parviglumis_BAPX_114_8 parviglumis BAPX
+parviglumis_BAPX_114_9 parviglumis BAPX
+parviglumis_BAPX_115_10 parviglumis BAPX
+parviglumis_BAPX_115_11 parviglumis BAPX
+parviglumis_BAPX_115_12 parviglumis BAPX
+parviglumis_BAPX_115_13 parviglumis BAPX
+parviglumis_BAPX_115_14 parviglumis BAPX
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+mexicana_CHPU_79_4 mexicana CHPU
+mexicana_CHPU_79_5 mexicana CHPU
+mexicana_CHPU_79_6 mexicana CHPU
+mexicana_CHPU_79_7 mexicana CHPU
+mexicana_CHPU_79_8 mexicana CHPU
+mexicana_DURA_7_10 mexicana DURA
+mexicana_DURA_7_11 mexicana DURA
+mexicana_DURA_7_12 mexicana DURA
+mexicana_DURA_7_13 mexicana DURA
+mexicana_DURA_7_14 mexicana DURA
+mexicana_DURA_7_15 mexicana DURA
+mexicana_DURA_7_1 mexicana DURA
+mexicana_DURA_7_2 mexicana DURA
+mexicana_DURA_7_3 mexicana DURA
+mexicana_DURA_7_4 mexicana DURA
+mexicana_DURA_7_5 mexicana DURA
+mexicana_DURA_7_6 mexicana DURA
+mexicana_DURA_7_7 mexicana DURA
+mexicana_DURA_7_8 mexicana DURA
+mexicana_DURA_7_9 mexicana DURA
+mexicana_CHPU_80_10 mexicana CHPU
+mexicana_CHPU_80_11 mexicana CHPU
+mexicana_CHPU_80_12 mexicana CHPU
+mexicana_CHPU_80_13 mexicana CHPU
+mexicana_CHPU_80_14 mexicana CHPU
+mexicana_CHPU_80_15 mexicana CHPU
+mexicana_CHPU_80_16 mexicana CHPU
+mexicana_CHPU_80_17 mexicana CHPU
+mexicana_CHPU_80_18 mexicana CHPU
+mexicana_CHPU_80_19 mexicana CHPU
+mexicana_CHPU_80_1 mexicana CHPU
+mexicana_CHPU_80_20 mexicana CHPU
+mexicana_CHPU_80_21 mexicana CHPU
+mexicana_CHPU_80_22 mexicana CHPU
+mexicana_CHPU_80_23 mexicana CHPU
+mexicana_CHPU_80_24 mexicana CHPU
+mexicana_CHPU_80_25 mexicana CHPU
+mexicana_CHPU_80_26 mexicana CHPU
+mexicana_CHPU_80_27 mexicana CHPU
+mexicana_CHPU_80_28 mexicana CHPU
+mexicana_CHPU_80_29 mexicana CHPU
+mexicana_CHPU_80_2 mexicana CHPU
+mexicana_CHPU_80_30 mexicana CHPU
+mexicana_CHPU_80_383 mexicana CHPU
+mexicana_CHPU_80_4 mexicana CHPU
+mexicana_CHPU_80_5 mexicana CHPU
+mexicana_CHPU_80_6 mexicana CHPU
+mexicana_CHPU_80_7 mexicana CHPU
+mexicana_CHPU_80_8 mexicana CHPU
+mexicana_CHPU_80_9 mexicana CHPU
+mexicana_TLAX_81_10 mexicana TLAX
+mexicana_TLAX_81_14 mexicana TLAX
+mexicana_TLAX_81_15 mexicana TLAX
+mexicana_TLAX_81_2 mexicana TLAX
+mexicana_TLAX_81_3 mexicana TLAX
+mexicana_TLAX_81_4 mexicana TLAX
+mexicana_TLAX_81_6 mexicana TLAX
+mexicana_TLAX_81_7 mexicana TLAX
+mexicana_TLAX_81_9 mexicana TLAX
+mexicana_SNRA_82_10 mexicana SNRA
+mexicana_SNRA_82_11 mexicana SNRA
+mexicana_SNRA_82_12 mexicana SNRA
+mexicana_SNRA_82_13 mexicana SNRA
+mexicana_SNRA_82_14 mexicana SNRA
+mexicana_SNRA_82_1 mexicana SNRA
+mexicana_SNRA_82_2 mexicana SNRA
+mexicana_SNRA_82_3 mexicana SNRA
+mexicana_SNRA_82_4 mexicana SNRA
+mexicana_SNRA_82_5 mexicana SNRA
+mexicana_SNRA_82_6 mexicana SNRA
+mexicana_SNRA_82_7 mexicana SNRA
+mexicana_SNRA_82_8 mexicana SNRA
+mexicana_SNRA_82_9 mexicana SNRA
+parviglumis_BGUA_83_10 parviglumis BGUA
+parviglumis_BGUA_83_11 parviglumis BGUA
+parviglumis_BGUA_83_12 parviglumis BGUA
+parviglumis_BGUA_83_13 parviglumis BGUA
+parviglumis_BGUA_83_14 parviglumis BGUA
+parviglumis_BGUA_83_15 parviglumis BGUA
+parviglumis_BGUA_83_1 parviglumis BGUA
+parviglumis_BGUA_83_2 parviglumis BGUA
+parviglumis_BGUA_83_3 parviglumis BGUA
+parviglumis_BGUA_83_4 parviglumis BGUA
+parviglumis_BGUA_83_582 parviglumis BGUA
+parviglumis_BGUA_83_6 parviglumis BGUA
+parviglumis_BGUA_83_7 parviglumis BGUA
+parviglumis_BGUA_83_8 parviglumis BGUA
+parviglumis_BGUA_83_9 parviglumis BGUA
+parviglumis_BGUA_84_10 parviglumis BGUA
+parviglumis_BGUA_84_11 parviglumis BGUA
+parviglumis_BGUA_84_13 parviglumis BGUA
+parviglumis_BGUA_84_15 parviglumis BGUA
+parviglumis_BGUA_84_1 parviglumis BGUA
+parviglumis_BGUA_84_2 parviglumis BGUA
+parviglumis_BGUA_84_3 parviglumis BGUA
+parviglumis_BGUA_84_4 parviglumis BGUA
+parviglumis_BGUA_84_5 parviglumis BGUA
+parviglumis_BGUA_84_7 parviglumis BGUA
+parviglumis_BGUA_85_10 parviglumis BGUA
+parviglumis_BGUA_85_11 parviglumis BGUA
+parviglumis_BGUA_85_12 parviglumis BGUA
+parviglumis_BGUA_85_13 parviglumis BGUA
+parviglumis_BGUA_85_14 parviglumis BGUA
+parviglumis_BGUA_85_15 parviglumis BGUA
+parviglumis_BGUA_85_160 parviglumis BGUA
+parviglumis_BGUA_85_2 parviglumis BGUA
+parviglumis_BGUA_85_3 parviglumis BGUA
+parviglumis_BGUA_85_484 parviglumis BGUA
+parviglumis_BGUA_85_592 parviglumis BGUA
+parviglumis_BGUA_85_6 parviglumis BGUA
+parviglumis_BGUA_85_713 parviglumis BGUA
+parviglumis_BGUA_85_8 parviglumis BGUA
+parviglumis_BGUA_85_9 parviglumis BGUA
+parviglumis_BGUA_86_10 parviglumis BGUA
+parviglumis_BGUA_86_11 parviglumis BGUA
+parviglumis_BGUA_86_13 parviglumis BGUA
+parviglumis_BGUA_86_14 parviglumis BGUA
+parviglumis_BGUA_86_15 parviglumis BGUA
+parviglumis_BGUA_86_1 parviglumis BGUA
+parviglumis_BGUA_86_2 parviglumis BGUA
+parviglumis_BGUA_86_3 parviglumis BGUA
+parviglumis_BGUA_86_4 parviglumis BGUA
+parviglumis_BGUA_86_6 parviglumis BGUA
+parviglumis_BGUA_86_7 parviglumis BGUA
+parviglumis_BGUA_86_9 parviglumis BGUA
+parviglumis_BGUA_87_10 parviglumis BGUA
+parviglumis_BGUA_87_11 parviglumis BGUA
+parviglumis_BGUA_87_12 parviglumis BGUA
+parviglumis_BGUA_87_13 parviglumis BGUA
+parviglumis_BGUA_87_14 parviglumis BGUA
+parviglumis_BGUA_87_15 parviglumis BGUA
+parviglumis_BGUA_87_16 parviglumis BGUA
+parviglumis_BGUA_87_18 parviglumis BGUA
+parviglumis_BGUA_87_19 parviglumis BGUA
+parviglumis_BGUA_87_1 parviglumis BGUA
+parviglumis_BGUA_87_20 parviglumis BGUA
+parviglumis_BGUA_87_21 parviglumis BGUA
+parviglumis_BGUA_87_22 parviglumis BGUA
+parviglumis_BGUA_87_23 parviglumis BGUA
+parviglumis_BGUA_87_24 parviglumis BGUA
+parviglumis_BGUA_87_25 parviglumis BGUA
+parviglumis_BGUA_87_26 parviglumis BGUA
+parviglumis_BGUA_87_27 parviglumis BGUA
+parviglumis_BGUA_87_28 parviglumis BGUA
+parviglumis_BGUA_87_29 parviglumis BGUA
+parviglumis_BGUA_87_2 parviglumis BGUA
+parviglumis_BGUA_87_30 parviglumis BGUA
+parviglumis_BGUA_87_4 parviglumis BGUA
+parviglumis_BGUA_87_5 parviglumis BGUA
+parviglumis_BGUA_87_638 parviglumis BGUA
+parviglumis_BGUA_87_7 parviglumis BGUA
+parviglumis_BGUA_87_8 parviglumis BGUA
+parviglumis_BQUE_88_10 parviglumis BQUE
+parviglumis_BQUE_88_11 parviglumis BQUE
+parviglumis_BQUE_88_12 parviglumis BQUE
+parviglumis_BQUE_88_13 parviglumis BQUE
+parviglumis_BQUE_88_14 parviglumis BQUE
+parviglumis_BQUE_88_15 parviglumis BQUE
+parviglumis_BQUE_88_1 parviglumis BQUE
+parviglumis_BQUE_88_2 parviglumis BQUE
+parviglumis_BQUE_88_4 parviglumis BQUE
+parviglumis_BQUE_88_5 parviglumis BQUE
+parviglumis_BQUE_88_6 parviglumis BQUE
+parviglumis_BQUE_88_7 parviglumis BQUE
+parviglumis_BQUE_88_8 parviglumis BQUE
+parviglumis_BQUE_88_9 parviglumis BQUE
+parviglumis_BGUA_89_10 parviglumis BGUA
+parviglumis_BGUA_89_11 parviglumis BGUA
+parviglumis_BGUA_89_12 parviglumis BGUA
+parviglumis_BGUA_89_13 parviglumis BGUA
+parviglumis_BGUA_89_14 parviglumis BGUA
+parviglumis_BGUA_89_15 parviglumis BGUA
+parviglumis_BGUA_89_1 parviglumis BGUA
+parviglumis_BGUA_89_2 parviglumis BGUA
+parviglumis_BGUA_89_3 parviglumis BGUA
+parviglumis_BGUA_89_4 parviglumis BGUA
+parviglumis_BGUA_89_5 parviglumis BGUA
+parviglumis_BGUA_89_6 parviglumis BGUA
+parviglumis_BGUA_89_7 parviglumis BGUA
+parviglumis_BGUA_89_8 parviglumis BGUA
+parviglumis_BGUA_89_9 parviglumis BGUA
+mexicana_DURA_8_10 mexicana DURA
+mexicana_DURA_8_11 mexicana DURA
+mexicana_DURA_8_12 mexicana DURA
+mexicana_DURA_8_13 mexicana DURA
+mexicana_DURA_8_14 mexicana DURA
+mexicana_DURA_8_15 mexicana DURA
+mexicana_DURA_8_1 mexicana DURA
+mexicana_DURA_8_2 mexicana DURA
+mexicana_DURA_8_3 mexicana DURA
+mexicana_DURA_8_4 mexicana DURA
+mexicana_DURA_8_5 mexicana DURA
+mexicana_DURA_8_6 mexicana DURA
+mexicana_DURA_8_7 mexicana DURA
+mexicana_DURA_8_8 mexicana DURA
+mexicana_DURA_8_9 mexicana DURA
+parviglumis_BGUA_90_10 parviglumis BGUA
+parviglumis_BGUA_90_11 parviglumis BGUA
+parviglumis_BGUA_90_12 parviglumis BGUA
+parviglumis_BGUA_90_14 parviglumis BGUA
+parviglumis_BGUA_90_15 parviglumis BGUA
+parviglumis_BGUA_90_1 parviglumis BGUA
+parviglumis_BGUA_90_2 parviglumis BGUA
+parviglumis_BGUA_90_3 parviglumis BGUA
+parviglumis_BGUA_90_4 parviglumis BGUA
+parviglumis_BGUA_90_5 parviglumis BGUA
+parviglumis_BGUA_90_6 parviglumis BGUA
+parviglumis_BGUA_90_7 parviglumis BGUA
+parviglumis_BGUA_90_8 parviglumis BGUA
+parviglumis_BGUA_90_9 parviglumis BGUA
+parviglumis_BEJU_91_10 parviglumis BEJU
+parviglumis_BEJU_91_13 parviglumis BEJU
+parviglumis_BEJU_91_14 parviglumis BEJU
+parviglumis_BEJU_91_15 parviglumis BEJU
+parviglumis_BEJU_91_108 parviglumis BEJU
+parviglumis_BEJU_91_216 parviglumis BEJU
+parviglumis_BEJU_91_3 parviglumis BEJU
+parviglumis_BEJU_91_4 parviglumis BEJU
+parviglumis_BEJU_91_5 parviglumis BEJU
+parviglumis_BEJU_91_6 parviglumis BEJU
+parviglumis_BEJU_91_7 parviglumis BEJU
+parviglumis_BEJU_91_8 parviglumis BEJU
+parviglumis_BEJU_91_9 parviglumis BEJU
+parviglumis_BEJU_92_10 parviglumis BEJU
+parviglumis_BEJU_92_11 parviglumis BEJU
+parviglumis_BEJU_92_12 parviglumis BEJU
+parviglumis_BEJU_92_13 parviglumis BEJU
+parviglumis_BEJU_92_14 parviglumis BEJU
+parviglumis_BEJU_92_1 parviglumis BEJU
+parviglumis_BEJU_92_3 parviglumis BEJU
+parviglumis_BEJU_92_4 parviglumis BEJU
+parviglumis_BEJU_92_5 parviglumis BEJU
+parviglumis_BEJU_92_6 parviglumis BEJU
+parviglumis_BEJU_92_7 parviglumis BEJU
+parviglumis_BEJU_92_8 parviglumis BEJU
+parviglumis_BEJU_92_9 parviglumis BEJU
+parviglumis_BEJU_93_10 parviglumis BEJU
+parviglumis_BEJU_93_11 parviglumis BEJU
+parviglumis_BEJU_93_12 parviglumis BEJU
+parviglumis_BEJU_93_13 parviglumis BEJU
+parviglumis_BEJU_93_15 parviglumis BEJU
+parviglumis_BEJU_93_1 parviglumis BEJU
+parviglumis_BEJU_93_2 parviglumis BEJU
+parviglumis_BEJU_93_3 parviglumis BEJU
+parviglumis_BEJU_93_4 parviglumis BEJU
+parviglumis_BEJU_93_5 parviglumis BEJU
+parviglumis_BEJU_93_6 parviglumis BEJU
+parviglumis_BEJU_93_7 parviglumis BEJU
+parviglumis_BEJU_93_8 parviglumis BEJU
+parviglumis_BEJU_93_9 parviglumis BEJU
+parviglumis_BEJU_94_10 parviglumis BEJU
+parviglumis_BEJU_94_11 parviglumis BEJU
+parviglumis_BEJU_94_12 parviglumis BEJU
+parviglumis_BEJU_94_13 parviglumis BEJU
+parviglumis_BEJU_94_14 parviglumis BEJU
+parviglumis_BEJU_94_15 parviglumis BEJU
+parviglumis_BEJU_94_4 parviglumis BEJU
+parviglumis_BEJU_94_5 parviglumis BEJU
+parviglumis_BEJU_94_6 parviglumis BEJU
+parviglumis_BEJU_94_7 parviglumis BEJU
+parviglumis_BEJU_94_8 parviglumis BEJU
+parviglumis_BEJU_94_9 parviglumis BEJU
+parviglumis_BEJU_95_10 parviglumis BEJU
+parviglumis_BEJU_95_11 parviglumis BEJU
+parviglumis_BEJU_95_12 parviglumis BEJU
+parviglumis_BEJU_95_13 parviglumis BEJU
+parviglumis_BEJU_95_14 parviglumis BEJU
+parviglumis_BEJU_95_15 parviglumis BEJU
+parviglumis_BEJU_95_1 parviglumis BEJU
+parviglumis_BEJU_95_2 parviglumis BEJU
+parviglumis_BEJU_95_3 parviglumis BEJU
+parviglumis_BEJU_95_448 parviglumis BEJU
+parviglumis_BEJU_95_5 parviglumis BEJU
+parviglumis_BEJU_95_6 parviglumis BEJU
+parviglumis_BEJU_95_7 parviglumis BEJU
+parviglumis_BEJU_95_8 parviglumis BEJU
+parviglumis_BEJU_95_9 parviglumis BEJU
+parviglumis_MALI_96_10 parviglumis MALI
+parviglumis_MALI_96_11 parviglumis MALI
+parviglumis_MALI_96_12 parviglumis MALI
+parviglumis_MALI_96_13 parviglumis MALI
+parviglumis_MALI_96_14 parviglumis MALI
+parviglumis_MALI_96_15 parviglumis MALI
+parviglumis_MALI_96_1 parviglumis MALI
+parviglumis_MALI_96_2 parviglumis MALI
+parviglumis_MALI_96_3 parviglumis MALI
+parviglumis_MALI_96_4 parviglumis MALI
+parviglumis_MALI_96_5 parviglumis MALI
+parviglumis_MALI_96_6 parviglumis MALI
+parviglumis_MALI_96_7 parviglumis MALI
+parviglumis_MALI_96_8 parviglumis MALI
+parviglumis_MALI_96_9 parviglumis MALI
+parviglumis_BMOR_97_10 parviglumis BMOR
+parviglumis_BMOR_97_12 parviglumis BMOR
+parviglumis_BMOR_97_13 parviglumis BMOR
+parviglumis_BMOR_97_1 parviglumis BMOR
+parviglumis_BMOR_97_2 parviglumis BMOR
+parviglumis_BMOR_97_3 parviglumis BMOR
+parviglumis_BMOR_97_4 parviglumis BMOR
+parviglumis_BMOR_97_5 parviglumis BMOR
+parviglumis_BMOR_97_6 parviglumis BMOR
+parviglumis_BMOR_97_7 parviglumis BMOR
+parviglumis_BMOR_97_9 parviglumis BMOR
+parviglumis_BMOR_98_1 parviglumis BMOR
+parviglumis_BMOR_98_2 parviglumis BMOR
+parviglumis_BMOR_98_3 parviglumis BMOR
+parviglumis_BIXC_99_10 parviglumis BIXC
+parviglumis_BIXC_99_11 parviglumis BIXC
+parviglumis_BIXC_99_12 parviglumis BIXC
+parviglumis_BIXC_99_13 parviglumis BIXC
+parviglumis_BIXC_99_14 parviglumis BIXC
+parviglumis_BIXC_99_1 parviglumis BIXC
+parviglumis_BIXC_99_2 parviglumis BIXC
+parviglumis_BIXC_99_3 parviglumis BIXC
+parviglumis_BIXC_99_4 parviglumis BIXC
+parviglumis_BIXC_99_5 parviglumis BIXC
+parviglumis_BIXC_99_6 parviglumis BIXC
+parviglumis_BIXC_99_7 parviglumis BIXC
+parviglumis_BIXC_99_8 parviglumis BIXC
+parviglumis_BIXC_99_9 parviglumis BIXC
+mexicana_NDUR_9_10 mexicana NDUR
+mexicana_NDUR_9_11 mexicana NDUR
+mexicana_NDUR_9_12 mexicana NDUR
+mexicana_NDUR_9_13 mexicana NDUR
+mexicana_NDUR_9_1403 mexicana NDUR
+mexicana_NDUR_9_15 mexicana NDUR
+mexicana_NDUR_9_1 mexicana NDUR
+mexicana_NDUR_9_2 mexicana NDUR
+mexicana_NDUR_9_3 mexicana NDUR
+mexicana_NDUR_9_4 mexicana NDUR
+mexicana_NDUR_9_5 mexicana NDUR
+mexicana_NDUR_9_6 mexicana NDUR
+mexicana_NDUR_9_7 mexicana NDUR
+mexicana_NDUR_9_8 mexicana NDUR
+mexicana_NDUR_9_9 mexicana NDUR
diff --git a/workflows/genetic_diversity/hierfstats/scripts/genotype_pca.R b/workflows/genetic_diversity/hierfstats/scripts/genotype_pca.R
new file mode 100644
index 0000000000000000000000000000000000000000..00ee641c92c3ff31155e3dccc4a65a6397e827ec
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/genotype_pca.R
@@ -0,0 +1,137 @@
+# install.packages("hierfstat")
+# install.packages('vcfR')
+library("hierfstat")
+library("adegenet")
+library("dplyr")
+library("vcfR")
+library(factoextra)
+library("RColorBrewer")
+library("magrittr")
+library(ade4)
+library(ggplot2)
+library(ggpubr)
+
+vcf_all_taxa <- read.vcfR("../../../phylogeny_based_GBS/data_out/plink2vcf_out/T3604_33929_all.vcf")
+
+# convert to genind object
+gi_vcf_all_taxa <- vcfR2genind(vcf_all_taxa)
+
+# adding population lables
+df_stru <- read.delim("../interm_data/v3_T3604_33929.recode.stru", header = F, sep = " ")
+
+df_stru$V2[df_stru$V2 == "parviglumis"] <- "Zea mays ssp. parviglumis"
+df_stru$V2[df_stru$V2 == "mexicana"] <- "Zea mays ssp. mexicana"
+df_stru$V2[df_stru$V2 == "huehuetenangensis"] <- "Zea mays ssp. huehuetenangensis"
+df_stru$V2[df_stru$V2 == "luxurians"] <- "Zea luxurians"
+df_stru$V2[df_stru$V2 == "diploperennis"] <- "Zea diploperennis"
+df_stru$V2[df_stru$V2 == "perennis"] <- "Zea perennis"
+df_stru$V2[df_stru$V2 == "nicaraguensis"] <- "Zea nicaraguensis"
+
+taxa <- as.character(df_stru$V2)
+
+
+pop(gi_vcf_all_taxa) <- as.factor(taxa)
+
+popNames(gi_vcf_all_taxa)
+
+
+#
+x <- tab(gi_vcf_all_taxa, NA.method = "mean") # relpacing NAs for PCA analysis
+
+pca.g <- dudi.pca(x, scale = F, scannf = FALSE, nf = 4)
+
+fviz_contrib(pca.g, choice = "ind", axes = c(1, 2), top = 20)
+
+# scree plot
+scree_1 <- fviz_eig(pca.g,
+ main = "Screeplot - Eigenvalues", linecolor = "black", ncp = 10,
+ barcolor = heat.colors(10), barfill = heat.colors(10), addlabels = T, ylim = c(0, 30),
+ ggtheme = theme_classic(), font.title = c(14, "bold", "black"),
+ font.x = c(14, "bold", "black"),
+ font.y = c(14, "bold", "black")
+) +
+ theme(text = element_text(size = rel(4.5))) # plot scree plot on percentage
+
+scree_1
+
+## PC 1+2
+
+# options(ggrepel.max.overlaps = 10)
+
+
+groups <- as.factor(gi_vcf_all_taxa$pop)
+
+# col <- brewer.pal(n=7, name = "Dark2") # n = number of groups
+
+# col2 <- c("#800000","#006400","#FF8C00","#778899","#0000FF","#00FFFF","#FFD700")
+col.g <- c("#4286FC", "#E11D20", "#E210A8", "#79DDFC", "#2E7312", "#686868", "#AE00F5")
+
+png("../plots/genotype_pca_plot_cols_ecogeo_paper.png", width = 12, height = 6, units = "in", res = 400, bg = "transparent")
+
+# ind_pc12_1 <- fviz_pca_ind(pca.g,
+# axes = c(1, 2),
+# label = "none",
+# col.ind = groups, # color by groups
+# palette = col.g,
+# #addEllipses = T, # Concentration ellipses
+# #ellipse.type = "confidence",
+# legend.title = "Taxa",
+# title="Accessions GBS PCA",
+# repel = TRUE,
+# font.title = c(12,"bold","black"),
+# font.x = c(12,"bold","black"),
+# font.y = c(12,"bold","black")
+# ) + labs(x = "PC1 (5.8%)", y = "PC2 (4.4%)")+
+# theme( text = element_text(color = 'black'))+
+# theme(legend.text=element_text(color="black",size=10))+
+# theme(legend.title = element_text(color ='black', size = 10, face='bold'))
+fviz_pca_ind(pca.g,
+ axes = c(1, 2),
+ label = "none",
+ col.ind = groups, # color by groups
+ palette = col.g,
+ # addEllipses = T, # Concentration ellipses
+ # ellipse.type = "confidence",
+ legend.title = "Taxa",
+ title = "Genotype PCA",
+ repel = TRUE,
+ # font.title = c(12,"bold","black"),
+ # font.x = c(12,"bold","black"),
+ # font.y = c(12,"bold","black")
+) +
+ theme(
+ plot.title = element_text(size = 25, face = "bold"),
+ text = element_text(size = 18, face = "bold"),
+ axis.title = element_text(size = 18),
+ axis.text = element_text(size = 18),
+ legend.title = element_text(size = 20, face = "bold"),
+ legend.text = element_text(size = 18, face = "italic", )
+ )
+
+dev.off()
+
+
+ind_pc12_1
+
+
+ind_pc13_1 <- fviz_pca_ind(pca.g,
+ axes = c(1, 3),
+ label = "none",
+ col.ind = groups, # color by groups
+ palette = col,
+ # addEllipses = TRUE, # Concentration ellipses
+ # ellipse.type = "confidence",
+ legend.title = "Groups",
+ title = "PC 1 vs 3",
+ repel = TRUE,
+ font.title = c(12, "bold", "black"),
+ font.x = c(12, "bold", "black"),
+ font.y = c(12, "bold", "black")
+) + labs(x = "PC1 (5.8%)", y = "PC3 (2.1%)")
+
+ind_pc13_1
+
+## ggarrange
+ggarrange(ind_pc12_1, ind_pc13_1,
+ labels = "AUTO"
+)
diff --git a/workflows/genetic_diversity/hierfstats/scripts/hierfst_data_prep_bash_commands.sh b/workflows/genetic_diversity/hierfstats/scripts/hierfst_data_prep_bash_commands.sh
new file mode 100644
index 0000000000000000000000000000000000000000..d186c46a2ee32be617067ef67518d094d20c3eea
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/hierfst_data_prep_bash_commands.sh
@@ -0,0 +1,24 @@
+# Step 1: Convert VCF file to STRUCTURE format
+# Using PLINK to convert the VCF file to STRUCTURE format with double-ID columns.
+plink --vcf ../../TEOSINTE/analyses/phylogeny_based_GBS/data_out/plink2vcf_out/T3604_33929_all.vcf \
+--recode structure \
+--out T3604_33929 \
+--double-id
+
+# Step 2: Rename the output file extension for clarity
+# STRUCTURE format files typically use the ".stru" extension.
+mv T3604_33929.recode.strct_in T3604_33929.recode.stru
+
+# Step 3: Remove unnecessary header lines and adjust the structure file
+# The first two lines of the STRUCTURE file (starting with 'S' or '-1') are removed,
+# and unwanted columns are filtered out.
+grep -vE '^S|^-1' T3604_33929.recode.stru | cut -d ' ' -f 1,3- > v2_T3604_33929.recode.stru
+
+# Step 4: Add population information to the STRUCTURE file
+# Population labels from the figtree annotation process are appended,
+# tabs are replaced with spaces for compatibility, and unnecessary fields are removed.
+paste figtree_annotation_2.txt v2_T3604_33929.recode.stru | sed -s 's/\t/ /g' | cut -f 2- > v3_T3604_33929.recode.stru
+
+# Step 5: Prepare the modified STRUCTURE file for analysis in R
+# The resulting STRUCTURE file (v3_T3604_33929.recode.stru) is ready for loading into R,
+# i.e., for population genetics analyses using the hierfstat package.
diff --git a/workflows/genetic_diversity/hierfstats/scripts/hierfstats_hetero.Rmd b/workflows/genetic_diversity/hierfstats/scripts/hierfstats_hetero.Rmd
new file mode 100644
index 0000000000000000000000000000000000000000..a7fa501be447abfbe02e713c50e4f2a1bdb2b6db
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/hierfstats_hetero.Rmd
@@ -0,0 +1,171 @@
+---
+title: "teo_genetic_diversity_fst_estimates"
+author: "Joseph Atemia"
+date: "5/31/2022"
+output: html_document
+---
+
+## set up
+
+```{r setup, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE)
+```
+
+working dir
+
+```{r }
+setwd("~/Desktop/server/TEOSINTE/genetic_diversity/")
+```
+
+libraries
+
+```{r }
+#install.packages("hierfstat")
+# install.packages('vcfR')
+library("hierfstat")
+library("adegenet")
+library("dplyr")
+library('vcfR')
+library(factoextra)
+library("RColorBrewer")
+library("magrittr")
+library(ade4)
+library(ggplot2)
+library(ggpubr)
+```
+
+# vcfr method
+
+```{r}
+vcf_all_taxa <- read.vcfR("../../../phylogeny_based_GBS/data_out/plink2vcf_out/T3604_33929_all.vcf")
+
+# convert to genind object
+gi_vcf_all_taxa <- vcfR2genind(vcf_all_taxa)
+
+# adding population lables
+df_stru <- read.delim("../interm_data/v3_T3604_33929.recode.stru", header = F, sep = ' ')
+taxa <- as.character(df_stru$V2)
+
+pop(gi_vcf_all_taxa) <- as.factor(taxa)
+
+popNames(gi_vcf_all_taxa)
+
+# convert for calculations of genetic measures
+all_taxa_hier <- genind2hierfstat(gi_vcf_all_taxa)
+
+stats_hier <- basic.stats(all_taxa_hier, diploid = T) # Ho and He analyses
+
+write.table(x = stats_hier$perloc, file = 'hierfst_basic_stats.txt', sep = '\t')
+
+wc(all_taxa_hier, diploid = T) # Fst
+
+
+# Pairwise Fst
+
+wc84 <- genet.dist(all_taxa_hier, method = "WC84", diploid = T)
+wc84
+nei87 <- genet.dist(all_taxa_hier, method = "Nei87", diploid = T)
+nei87
+
+```
+
+## PCA plot
+
+```{r}
+#
+x <- tab(gi_vcf_all_taxa, NA.method="mean") # relpacing NAs for PCA analysis
+
+pca2 <- dudi.pca(x, scale = F, scannf = FALSE, nf = 4)
+
+fviz_contrib(pca2, choice = "ind", axes = c(1,2), top = 20)
+
+# scree plot
+scree_1 <- fviz_eig(pca2, main = "Screeplot - Eigenvalues", linecolor = "black", ncp = 10,
+ barcolor = heat.colors(10), barfill = heat.colors(10), addlabels = T, ylim = c(0,30),
+ ggtheme = theme_classic(), font.title = c(14,"bold","black"),
+ font.x = c(14,"bold","black"),
+ font.y = c(14,"bold","black")) +
+ theme(text = element_text(size=rel(4.5)))# plot scree plot on percentage
+
+scree_1
+
+## PC 1+2
+
+#options(ggrepel.max.overlaps = 10)
+
+
+groups <- as.factor(gi_vcf_all_taxa$pop)
+
+col <- brewer.pal(n=7, name = "Dark2") # n = number of groups
+
+col2 <- c("#800000","#008000","#808000","#FF0000","#0000FF","#00FFFF","#FF00FF")
+
+png("../plots/genotype_pca_plot.png", width = 16, height = 10, units = 'in', res = 400, bg = 'transparent')
+
+
+# ind_pc12_1 <- fviz_pca_ind(pca2,
+# axes = c(1, 2),
+# label = "none",
+# col.ind = groups, # color by groups
+# palette = col2,
+# #addEllipses = T, # Concentration ellipses
+# #ellipse.type = "confidence",
+# legend.title = "Taxa",
+# title="Accessions GBS PCA",
+# repel = TRUE,
+# font.title = c(12,"bold","black"),
+# font.x = c(12,"bold","black"),
+# font.y = c(12,"bold","black")
+# ) + labs(x = "PC1 (5.8%)", y = "PC2 (4.4%)")+
+# theme( text = element_text(color = 'black'))+
+# theme(legend.text=element_text(color="black",size=10))+
+# theme(legend.title = element_text(color ='black', size = 10, face='bold'))
+fviz_pca_ind(pca2,
+ # axes = c(1, 2),
+ label = "none",
+ col.ind = groups, # color by groups
+ palette = col2,
+ #addEllipses = T, # Concentration ellipses
+ #ellipse.type = "confidence",
+ legend.title = "Taxa",
+ title= "Genotype PCA",
+ repel = TRUE,
+ # font.title = c(12,"bold","black"),
+ # font.x = c(12,"bold","black"),
+ # font.y = c(12,"bold","black")
+ ) +
+ theme( text = element_text(color = 'black'))+
+ theme(legend.text=element_text(color="black",size=10))+
+ theme(legend.title = element_text(color ='black', size = 10, face='bold'))
+# +
+# labs(x = "PC1 (5.8%)", y = "PC2 (4.4%)")+
+
+
+dev.off()
+
+
+ind_pc12_1
+
+
+ind_pc13_1 <- fviz_pca_ind(pca2,
+ axes = c(1, 3),
+ label = "none",
+ col.ind = groups, # color by groups
+ palette = col,
+ #addEllipses = TRUE, # Concentration ellipses
+ #ellipse.type = "confidence",
+ legend.title = "Groups",
+ title="PC 1 vs 3",
+ repel = TRUE,
+ font.title = c(12,"bold","black"),
+ font.x = c(12,"bold","black"),
+ font.y = c(12,"bold","black")
+) + labs(x = "PC1 (5.8%)", y = "PC3 (2.1%)")
+ind_pc13_1
+## ggarrange
+ggarrange(ind_pc12_1, ind_pc13_1,
+ labels = "AUTO"
+)
+
+
+```
diff --git a/workflows/genetic_diversity/hierfstats/scripts/lables.txt b/workflows/genetic_diversity/hierfstats/scripts/lables.txt
new file mode 100644
index 0000000000000000000000000000000000000000..703d9ad8bd123076040b2696c3783de36c6281b2
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/lables.txt
@@ -0,0 +1,3606 @@
+S1_992727
+-1
+parviglumis_BIXC_100_10
+parviglumis_BIXC_100_11
+parviglumis_BIXC_100_12
+parviglumis_BIXC_100_13
+parviglumis_BIXC_100_15
+parviglumis_BIXC_100_1
+parviglumis_BIXC_100_2
+parviglumis_BIXC_100_3
+parviglumis_BIXC_100_4
+parviglumis_BIXC_100_5
+parviglumis_BIXC_100_7
+parviglumis_BIXC_100_8
+parviglumis_BIXC_100_9
+parviglumis_BIXC_101_10
+parviglumis_BIXC_101_11
+parviglumis_BIXC_101_12
+parviglumis_BIXC_101_13
+parviglumis_BIXC_101_14
+parviglumis_BIXC_101_15
+parviglumis_BIXC_101_1
+parviglumis_BIXC_101_2
+parviglumis_BIXC_101_3
+parviglumis_BIXC_101_4
+parviglumis_BIXC_101_5
+parviglumis_BIXC_101_6
+parviglumis_BIXC_101_7
+parviglumis_BIXC_101_8
+parviglumis_BIXC_101_9
+parviglumis_BZAC_102_11
+parviglumis_BZAC_102_12
+parviglumis_BZAC_102_13
+parviglumis_BZAC_102_14
+parviglumis_BZAC_102_15
+parviglumis_BZAC_102_1
+parviglumis_BZAC_102_2
+parviglumis_BZAC_102_4
+parviglumis_BZAC_102_5
+parviglumis_BZAC_102_6
+parviglumis_BZAC_102_7
+parviglumis_BZAC_102_8
+parviglumis_BZAC_102_9
+parviglumis_BIXC_103_10
+parviglumis_BIXC_103_11
+parviglumis_BIXC_103_12
+parviglumis_BIXC_103_13
+parviglumis_BIXC_103_14
+parviglumis_BIXC_103_15
+parviglumis_BIXC_103_1
+parviglumis_BIXC_103_2
+parviglumis_BIXC_103_3
+parviglumis_BIXC_103_4
+parviglumis_BIXC_103_5
+parviglumis_BIXC_103_6
+parviglumis_BIXC_103_7
+parviglumis_BIXC_103_8
+parviglumis_BIXC_103_9
+parviglumis_BZAC_104_10
+parviglumis_BZAC_104_11
+parviglumis_BZAC_104_12
+parviglumis_BZAC_104_13
+parviglumis_BZAC_104_14
+parviglumis_BZAC_104_1
+parviglumis_BZAC_104_2
+parviglumis_BZAC_104_3
+parviglumis_BZAC_104_4
+parviglumis_BZAC_104_5
+parviglumis_BZAC_104_6
+parviglumis_BZAC_104_7
+parviglumis_BZAC_104_8
+parviglumis_BZAC_104_9
+parviglumis_BZAC_105_10
+parviglumis_BZAC_105_11
+parviglumis_BZAC_105_12
+parviglumis_BZAC_105_13
+parviglumis_BZAC_105_14
+parviglumis_BZAC_105_15
+parviglumis_BZAC_105_1
+parviglumis_BZAC_105_2
+parviglumis_BZAC_105_3
+parviglumis_BZAC_105_4
+parviglumis_BZAC_105_5
+parviglumis_BZAC_105_6
+parviglumis_BZAC_105_7
+parviglumis_BZAC_105_9
+parviglumis_BZAC_106_10
+parviglumis_BZAC_106_11
+parviglumis_BZAC_106_12
+parviglumis_BZAC_106_13
+parviglumis_BZAC_106_14
+parviglumis_BZAC_106_15
+parviglumis_BZAC_106_3
+parviglumis_BZAC_106_5
+parviglumis_BZAC_106_6
+parviglumis_BZAC_106_7
+parviglumis_BZAC_106_8
+parviglumis_BZAC_107_10
+parviglumis_BZAC_107_11
+parviglumis_BZAC_107_12
+parviglumis_BZAC_107_13
+parviglumis_BZAC_107_14
+parviglumis_BZAC_107_15
+parviglumis_BZAC_107_16
+parviglumis_BZAC_107_17
+parviglumis_BZAC_107_18
+parviglumis_BZAC_107_19
+parviglumis_BZAC_107_1
+parviglumis_BZAC_107_20
+parviglumis_BZAC_107_21
+parviglumis_BZAC_107_22
+parviglumis_BZAC_107_23
+parviglumis_BZAC_107_24
+parviglumis_BZAC_107_25
+parviglumis_BZAC_107_26
+parviglumis_BZAC_107_27
+parviglumis_BZAC_107_28
+parviglumis_BZAC_107_29
+parviglumis_BZAC_107_2
+parviglumis_BZAC_107_30
+parviglumis_BZAC_107_3
+parviglumis_BZAC_107_4
+parviglumis_BZAC_107_5
+parviglumis_BZAC_107_6
+parviglumis_BZAC_107_7
+parviglumis_BZAC_107_8
+parviglumis_BZAC_107_9
+parviglumis_BZAC_108_10
+parviglumis_BZAC_108_11
+parviglumis_BZAC_108_12
+parviglumis_BZAC_108_13
+parviglumis_BZAC_108_15
+parviglumis_BZAC_108_1
+parviglumis_BZAC_108_2
+parviglumis_BZAC_108_3
+parviglumis_BZAC_108_4
+parviglumis_BZAC_108_5
+parviglumis_BZAC_108_6
+parviglumis_BZAC_108_7
+parviglumis_BZAC_108_8
+parviglumis_BZAC_108_9
+parviglumis_BTEL_109_10
+parviglumis_BTEL_109_11
+parviglumis_BTEL_109_12
+parviglumis_BTEL_109_13
+parviglumis_BTEL_109_14
+parviglumis_BTEL_109_15
+parviglumis_BTEL_109_1
+parviglumis_BTEL_109_2
+parviglumis_BTEL_109_3
+parviglumis_BTEL_109_4
+parviglumis_BTEL_109_5
+parviglumis_BTEL_109_6
+parviglumis_BTEL_109_7
+parviglumis_BTEL_109_8
+mexicana_NDUR_10_10
+mexicana_NDUR_10_11
+mexicana_NDUR_10_12
+mexicana_NDUR_10_13
+mexicana_NDUR_10_14
+mexicana_NDUR_10_15
+mexicana_NDUR_10_16
+mexicana_NDUR_10_1758
+mexicana_NDUR_10_18
+mexicana_NDUR_10_1
+mexicana_NDUR_10_20
+mexicana_NDUR_10_21
+mexicana_NDUR_10_22
+mexicana_NDUR_10_23
+mexicana_NDUR_10_24
+mexicana_NDUR_10_25
+mexicana_NDUR_10_26
+mexicana_NDUR_10_28
+mexicana_NDUR_10_29
+mexicana_NDUR_10_2
+mexicana_NDUR_10_30
+mexicana_NDUR_10_3
+mexicana_NDUR_10_4
+mexicana_NDUR_10_5
+mexicana_NDUR_10_6
+mexicana_NDUR_10_7
+mexicana_NDUR_10_8
+mexicana_NDUR_10_9
+parviglumis_BZAC_110_10
+parviglumis_BZAC_110_11
+parviglumis_BZAC_110_12
+parviglumis_BZAC_110_13
+parviglumis_BZAC_110_14
+parviglumis_BZAC_110_15
+parviglumis_BZAC_110_1
+parviglumis_BZAC_110_2
+parviglumis_BZAC_110_3
+parviglumis_BZAC_110_4
+parviglumis_BZAC_110_5
+parviglumis_BZAC_110_6
+parviglumis_BZAC_110_7
+parviglumis_BZAC_110_8
+parviglumis_BZAC_111_10
+parviglumis_BZAC_111_12
+parviglumis_BZAC_111_13
+parviglumis_BZAC_111_15
+parviglumis_BZAC_111_1
+parviglumis_BZAC_111_2
+parviglumis_BZAC_111_3
+parviglumis_BZAC_111_5
+parviglumis_BZAC_111_6
+parviglumis_BZAC_111_7
+parviglumis_BZAC_111_8
+parviglumis_BZAC_111_9
+parviglumis_BTEL_112_10
+parviglumis_BTEL_112_11
+parviglumis_BTEL_112_12
+parviglumis_BTEL_112_13
+parviglumis_BTEL_112_14
+parviglumis_BTEL_112_15
+parviglumis_BTEL_112_1
+parviglumis_BTEL_112_2
+parviglumis_BTEL_112_3
+parviglumis_BTEL_112_4
+parviglumis_BTEL_112_5
+parviglumis_BTEL_112_6
+parviglumis_BTEL_112_7
+parviglumis_BTEL_112_8
+parviglumis_BTEL_112_9
+parviglumis_BTEL_113_13
+parviglumis_BTEL_113_15
+parviglumis_BTEL_113_1
+parviglumis_BTEL_113_2
+parviglumis_BTEL_113_3
+parviglumis_BTEL_113_4
+parviglumis_BTEL_113_5
+parviglumis_BTEL_113_6
+parviglumis_BTEL_113_8
+parviglumis_BTEL_113_9
+parviglumis_BAPX_114_10
+parviglumis_BAPX_114_11
+parviglumis_BAPX_114_12
+parviglumis_BAPX_114_15
+parviglumis_BAPX_114_1
+parviglumis_BAPX_114_2
+parviglumis_BAPX_114_3
+parviglumis_BAPX_114_4
+parviglumis_BAPX_114_5
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+parviglumis_BEJU_95_5
+parviglumis_BEJU_95_6
+parviglumis_BEJU_95_7
+parviglumis_BEJU_95_8
+parviglumis_BEJU_95_9
+parviglumis_MALI_96_10
+parviglumis_MALI_96_11
+parviglumis_MALI_96_12
+parviglumis_MALI_96_13
+parviglumis_MALI_96_14
+parviglumis_MALI_96_15
+parviglumis_MALI_96_1
+parviglumis_MALI_96_2
+parviglumis_MALI_96_3
+parviglumis_MALI_96_4
+parviglumis_MALI_96_5
+parviglumis_MALI_96_6
+parviglumis_MALI_96_7
+parviglumis_MALI_96_8
+parviglumis_MALI_96_9
+parviglumis_BMOR_97_10
+parviglumis_BMOR_97_12
+parviglumis_BMOR_97_13
+parviglumis_BMOR_97_1
+parviglumis_BMOR_97_2
+parviglumis_BMOR_97_3
+parviglumis_BMOR_97_4
+parviglumis_BMOR_97_5
+parviglumis_BMOR_97_6
+parviglumis_BMOR_97_7
+parviglumis_BMOR_97_9
+parviglumis_BMOR_98_1
+parviglumis_BMOR_98_2
+parviglumis_BMOR_98_3
+parviglumis_BIXC_99_10
+parviglumis_BIXC_99_11
+parviglumis_BIXC_99_12
+parviglumis_BIXC_99_13
+parviglumis_BIXC_99_14
+parviglumis_BIXC_99_1
+parviglumis_BIXC_99_2
+parviglumis_BIXC_99_3
+parviglumis_BIXC_99_4
+parviglumis_BIXC_99_5
+parviglumis_BIXC_99_6
+parviglumis_BIXC_99_7
+parviglumis_BIXC_99_8
+parviglumis_BIXC_99_9
+mexicana_NDUR_9_10
+mexicana_NDUR_9_11
+mexicana_NDUR_9_12
+mexicana_NDUR_9_13
+mexicana_NDUR_9_1403
+mexicana_NDUR_9_15
+mexicana_NDUR_9_1
+mexicana_NDUR_9_2
+mexicana_NDUR_9_3
+mexicana_NDUR_9_4
+mexicana_NDUR_9_5
+mexicana_NDUR_9_6
+mexicana_NDUR_9_7
+mexicana_NDUR_9_8
+mexicana_NDUR_9_9
diff --git a/workflows/genetic_diversity/hierfstats/scripts/parv_annotation_with_location.txt b/workflows/genetic_diversity/hierfstats/scripts/parv_annotation_with_location.txt
new file mode 100644
index 0000000000000000000000000000000000000000..feef03f8e245eb63c1653d37d5a3e58a95919e17
--- /dev/null
+++ b/workflows/genetic_diversity/hierfstats/scripts/parv_annotation_with_location.txt
@@ -0,0 +1,1793 @@
+parviglumis_BIXC_100_10 BIXC BIXC_100_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_11 BIXC BIXC_100_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_12 BIXC BIXC_100_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_13 BIXC BIXC_100_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_15 BIXC BIXC_100_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_1 BIXC BIXC_100_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_2 BIXC BIXC_100_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_3 BIXC BIXC_100_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_4 BIXC BIXC_100_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_5 BIXC BIXC_100_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_7 BIXC BIXC_100_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_8 BIXC BIXC_100_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_100_9 BIXC BIXC_100_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_10 BIXC BIXC_101_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_11 BIXC BIXC_101_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_12 BIXC BIXC_101_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_13 BIXC BIXC_101_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_14 BIXC BIXC_101_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_15 BIXC BIXC_101_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_1 BIXC BIXC_101_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_2 BIXC BIXC_101_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_3 BIXC BIXC_101_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_4 BIXC BIXC_101_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_5 BIXC BIXC_101_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_6 BIXC BIXC_101_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_7 BIXC BIXC_101_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_8 BIXC BIXC_101_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_101_9 BIXC BIXC_101_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_11 BZAC BZAC_102_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_12 BZAC BZAC_102_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_13 BZAC BZAC_102_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_14 BZAC BZAC_102_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_15 BZAC BZAC_102_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_1 BZAC BZAC_102_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_2 BZAC BZAC_102_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_4 BZAC BZAC_102_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_5 BZAC BZAC_102_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_6 BZAC BZAC_102_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_7 BZAC BZAC_102_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_8 BZAC BZAC_102_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_102_9 BZAC BZAC_102_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_10 BIXC BIXC_103_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_11 BIXC BIXC_103_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_12 BIXC BIXC_103_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_13 BIXC BIXC_103_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_14 BIXC BIXC_103_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_15 BIXC BIXC_103_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_1 BIXC BIXC_103_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_2 BIXC BIXC_103_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_3 BIXC BIXC_103_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_4 BIXC BIXC_103_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_5 BIXC BIXC_103_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_6 BIXC BIXC_103_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_7 BIXC BIXC_103_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_8 BIXC BIXC_103_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_103_9 BIXC BIXC_103_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_10 BZAC BZAC_104_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_11 BZAC BZAC_104_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_12 BZAC BZAC_104_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_13 BZAC BZAC_104_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_14 BZAC BZAC_104_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_1 BZAC BZAC_104_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_2 BZAC BZAC_104_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_3 BZAC BZAC_104_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_4 BZAC BZAC_104_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_5 BZAC BZAC_104_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_6 BZAC BZAC_104_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_7 BZAC BZAC_104_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_8 BZAC BZAC_104_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_104_9 BZAC BZAC_104_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_10 BZAC BZAC_105_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_11 BZAC BZAC_105_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_12 BZAC BZAC_105_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_13 BZAC BZAC_105_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_14 BZAC BZAC_105_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_15 BZAC BZAC_105_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_1 BZAC BZAC_105_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_2 BZAC BZAC_105_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_3 BZAC BZAC_105_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_4 BZAC BZAC_105_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_5 BZAC BZAC_105_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_6 BZAC BZAC_105_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_7 BZAC BZAC_105_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_105_9 BZAC BZAC_105_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_10 BZAC BZAC_106_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_11 BZAC BZAC_106_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_12 BZAC BZAC_106_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_13 BZAC BZAC_106_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_14 BZAC BZAC_106_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_15 BZAC BZAC_106_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_3 BZAC BZAC_106_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_5 BZAC BZAC_106_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_6 BZAC BZAC_106_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_7 BZAC BZAC_106_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_106_8 BZAC BZAC_106_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_10 BZAC BZAC_107_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_11 BZAC BZAC_107_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_12 BZAC BZAC_107_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_13 BZAC BZAC_107_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_14 BZAC BZAC_107_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_15 BZAC BZAC_107_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_16 BZAC BZAC_107_16 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_17 BZAC BZAC_107_17 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_18 BZAC BZAC_107_18 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_19 BZAC BZAC_107_19 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_1 BZAC BZAC_107_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_20 BZAC BZAC_107_20 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_21 BZAC BZAC_107_21 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_22 BZAC BZAC_107_22 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_23 BZAC BZAC_107_23 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_24 BZAC BZAC_107_24 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_25 BZAC BZAC_107_25 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_26 BZAC BZAC_107_26 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_27 BZAC BZAC_107_27 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_28 BZAC BZAC_107_28 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_29 BZAC BZAC_107_29 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_2 BZAC BZAC_107_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_30 BZAC BZAC_107_30 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_3 BZAC BZAC_107_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_4 BZAC BZAC_107_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_5 BZAC BZAC_107_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_6 BZAC BZAC_107_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_7 BZAC BZAC_107_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_8 BZAC BZAC_107_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_107_9 BZAC BZAC_107_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_10 BZAC BZAC_108_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_11 BZAC BZAC_108_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_12 BZAC BZAC_108_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_13 BZAC BZAC_108_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_15 BZAC BZAC_108_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_1 BZAC BZAC_108_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_2 BZAC BZAC_108_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_3 BZAC BZAC_108_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_4 BZAC BZAC_108_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_5 BZAC BZAC_108_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_6 BZAC BZAC_108_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_7 BZAC BZAC_108_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_8 BZAC BZAC_108_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_108_9 BZAC BZAC_108_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_10 BTEL BTEL_109_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_11 BTEL BTEL_109_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_12 BTEL BTEL_109_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_13 BTEL BTEL_109_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_14 BTEL BTEL_109_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_15 BTEL BTEL_109_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_1 BTEL BTEL_109_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_2 BTEL BTEL_109_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_3 BTEL BTEL_109_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_4 BTEL BTEL_109_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_5 BTEL BTEL_109_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_6 BTEL BTEL_109_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_7 BTEL BTEL_109_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_109_8 BTEL BTEL_109_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_10 BZAC BZAC_110_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_11 BZAC BZAC_110_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_12 BZAC BZAC_110_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_13 BZAC BZAC_110_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_14 BZAC BZAC_110_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_15 BZAC BZAC_110_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_1 BZAC BZAC_110_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_2 BZAC BZAC_110_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_3 BZAC BZAC_110_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_4 BZAC BZAC_110_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_5 BZAC BZAC_110_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_6 BZAC BZAC_110_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_7 BZAC BZAC_110_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_110_8 BZAC BZAC_110_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_10 BZAC BZAC_111_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_12 BZAC BZAC_111_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_13 BZAC BZAC_111_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_15 BZAC BZAC_111_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_1 BZAC BZAC_111_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_2 BZAC BZAC_111_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_3 BZAC BZAC_111_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_5 BZAC BZAC_111_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_6 BZAC BZAC_111_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_7 BZAC BZAC_111_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_8 BZAC BZAC_111_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BZAC_111_9 BZAC BZAC_111_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_10 BTEL BTEL_112_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_11 BTEL BTEL_112_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_12 BTEL BTEL_112_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_13 BTEL BTEL_112_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_14 BTEL BTEL_112_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_15 BTEL BTEL_112_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_1 BTEL BTEL_112_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_2 BTEL BTEL_112_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_3 BTEL BTEL_112_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_4 BTEL BTEL_112_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_5 BTEL BTEL_112_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_6 BTEL BTEL_112_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_7 BTEL BTEL_112_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_8 BTEL BTEL_112_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_112_9 BTEL BTEL_112_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_13 BTEL BTEL_113_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_15 BTEL BTEL_113_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_1 BTEL BTEL_113_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_2 BTEL BTEL_113_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_3 BTEL BTEL_113_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_4 BTEL BTEL_113_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_5 BTEL BTEL_113_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_6 BTEL BTEL_113_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_8 BTEL BTEL_113_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BTEL_113_9 BTEL BTEL_113_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_10 BAPX BAPX_114_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_11 BAPX BAPX_114_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_12 BAPX BAPX_114_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_15 BAPX BAPX_114_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_1 BAPX BAPX_114_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_2 BAPX BAPX_114_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_3 BAPX BAPX_114_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_4 BAPX BAPX_114_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_5 BAPX BAPX_114_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_6 BAPX BAPX_114_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_7 BAPX BAPX_114_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_8 BAPX BAPX_114_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_114_9 BAPX BAPX_114_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_10 BAPX BAPX_115_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_11 BAPX BAPX_115_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_12 BAPX BAPX_115_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_13 BAPX BAPX_115_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_14 BAPX BAPX_115_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_15 BAPX BAPX_115_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_1 BAPX BAPX_115_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_2 BAPX BAPX_115_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_3 BAPX BAPX_115_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_4 BAPX BAPX_115_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_5 BAPX BAPX_115_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_6 BAPX BAPX_115_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_7 BAPX BAPX_115_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_8 BAPX BAPX_115_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BAPX_115_9 BAPX BAPX_115_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_11 BOLI BOLI_116_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_12 BOLI BOLI_116_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_13 BOLI BOLI_116_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_14 BOLI BOLI_116_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_1 BOLI BOLI_116_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_2 BOLI BOLI_116_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_3 BOLI BOLI_116_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_4 BOLI BOLI_116_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_5 BOLI BOLI_116_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_6 BOLI BOLI_116_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_7 BOLI BOLI_116_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_8 BOLI BOLI_116_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BOLI_116_9 BOLI BOLI_116_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_10 BHUI BHUI_117_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_11 BHUI BHUI_117_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_12 BHUI BHUI_117_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_13 BHUI BHUI_117_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_14 BHUI BHUI_117_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_1 BHUI BHUI_117_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_3 BHUI BHUI_117_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_5 BHUI BHUI_117_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_6 BHUI BHUI_117_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_7 BHUI BHUI_117_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_8 BHUI BHUI_117_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_117_9 BHUI BHUI_117_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_10 BHUI BHUI_118_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_11 BHUI BHUI_118_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_12 BHUI BHUI_118_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_13 BHUI BHUI_118_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_14 BHUI BHUI_118_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_15 BHUI BHUI_118_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_2 BHUI BHUI_118_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_3 BHUI BHUI_118_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_4 BHUI BHUI_118_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_5 BHUI BHUI_118_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_6 BHUI BHUI_118_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BHUI_118_9 BHUI BHUI_118_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_10 BMAZ BMAZ_119_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_11 BMAZ BMAZ_119_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_12 BMAZ BMAZ_119_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_13 BMAZ BMAZ_119_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_15 BMAZ BMAZ_119_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_3 BMAZ BMAZ_119_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_7 BMAZ BMAZ_119_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_119_9 BMAZ BMAZ_119_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_1 BMAZ BMAZ_120_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_3 BMAZ BMAZ_120_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_5 BMAZ BMAZ_120_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_7 BMAZ BMAZ_120_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_8 BMAZ BMAZ_120_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_120_9 BMAZ BMAZ_120_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_10 BMAZ BMAZ_121_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_12 BMAZ BMAZ_121_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_14 BMAZ BMAZ_121_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_3 BMAZ BMAZ_121_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_5 BMAZ BMAZ_121_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_7 BMAZ BMAZ_121_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_121_8 BMAZ BMAZ_121_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_10 BCOL BCOL_122_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_11 BCOL BCOL_122_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_12 BCOL BCOL_122_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_13 BCOL BCOL_122_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_14 BCOL BCOL_122_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_3 BCOL BCOL_122_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_4 BCOL BCOL_122_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_5 BCOL BCOL_122_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_122_7 BCOL BCOL_122_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_10 BMAZ BMAZ_123_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_11 BMAZ BMAZ_123_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_12 BMAZ BMAZ_123_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_13 BMAZ BMAZ_123_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_14 BMAZ BMAZ_123_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_15 BMAZ BMAZ_123_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_1 BMAZ BMAZ_123_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_2 BMAZ BMAZ_123_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_3 BMAZ BMAZ_123_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_4 BMAZ BMAZ_123_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_5 BMAZ BMAZ_123_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_6 BMAZ BMAZ_123_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_7 BMAZ BMAZ_123_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_8 BMAZ BMAZ_123_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_123_9 BMAZ BMAZ_123_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_12 BCOL BCOL_124_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_14 BCOL BCOL_124_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_15 BCOL BCOL_124_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_16 BCOL BCOL_124_16 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_17 BCOL BCOL_124_17 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_18 BCOL BCOL_124_18 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_1 BCOL BCOL_124_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_21 BCOL BCOL_124_21 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_22 BCOL BCOL_124_22 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_24 BCOL BCOL_124_24 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_26 BCOL BCOL_124_26 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_27 BCOL BCOL_124_27 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_28 BCOL BCOL_124_28 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_29 BCOL BCOL_124_29 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_2 BCOL BCOL_124_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_30 BCOL BCOL_124_30 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_3 BCOL BCOL_124_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_4 BCOL BCOL_124_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_5 BCOL BCOL_124_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_6 BCOL BCOL_124_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_7 BCOL BCOL_124_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_8 BCOL BCOL_124_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_124_9 BCOL BCOL_124_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_10 BCOL BCOL_125_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_11 BCOL BCOL_125_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_12 BCOL BCOL_125_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_13 BCOL BCOL_125_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_14 BCOL BCOL_125_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_15 BCOL BCOL_125_15 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_1 BCOL BCOL_125_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_2 BCOL BCOL_125_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_3 BCOL BCOL_125_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_4 BCOL BCOL_125_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_6 BCOL BCOL_125_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_7 BCOL BCOL_125_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_8 BCOL BCOL_125_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BCOL_125_9 BCOL BCOL_125_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_10 BMAZ BMAZ_126_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_11 BMAZ BMAZ_126_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_1 BMAZ BMAZ_126_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_2 BMAZ BMAZ_126_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_3 BMAZ BMAZ_126_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_4 BMAZ BMAZ_126_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_5 BMAZ BMAZ_126_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_6 BMAZ BMAZ_126_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_7 BMAZ BMAZ_126_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_126_9 BMAZ BMAZ_126_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_10 BMAZ BMAZ_127_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_1 BMAZ BMAZ_127_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_2 BMAZ BMAZ_127_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_3 BMAZ BMAZ_127_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_4 BMAZ BMAZ_127_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_6 BMAZ BMAZ_127_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_7 BMAZ BMAZ_127_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BMAZ_127_9 BMAZ BMAZ_127_9 Zea mays ssp. parviglumis Guerrero
+parviglumis_BSAU_128_10 BSAU BSAU_128_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_11 BSAU BSAU_128_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_12 BSAU BSAU_128_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_13 BSAU BSAU_128_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_14 BSAU BSAU_128_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_15 BSAU BSAU_128_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_1 BSAU BSAU_128_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_2 BSAU BSAU_128_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_3 BSAU BSAU_128_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_6 BSAU BSAU_128_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_7 BSAU BSAU_128_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BSAU_128_8 BSAU BSAU_128_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BTEJ_129_10 BTEJ BTEJ_129_10 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_1199 BTEJ BTEJ_129_1199 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_12 BTEJ BTEJ_129_12 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_13 BTEJ BTEJ_129_13 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_14 BTEJ BTEJ_129_14 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_15 BTEJ BTEJ_129_15 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_1 BTEJ BTEJ_129_1 Zea mays ssp. parviglumis México
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+parviglumis_BTEJ_129_3 BTEJ BTEJ_129_3 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_4 BTEJ BTEJ_129_4 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_5 BTEJ BTEJ_129_5 Zea mays ssp. parviglumis México
+parviglumis_BTEJ_129_6 BTEJ BTEJ_129_6 Zea mays ssp. parviglumis México
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+parviglumis_BTEJ_129_8 BTEJ BTEJ_129_8 Zea mays ssp. parviglumis México
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+parviglumis_BTEJ_132_9 BTEJ BTEJ_132_9 Zea mays ssp. parviglumis México
+parviglumis_BOTZ_133_10 BOTZ BOTZ_133_10 Zea mays ssp. parviglumis México
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+parviglumis_BOTZ_134_12 BOTZ BOTZ_134_12 Zea mays ssp. parviglumis México
+parviglumis_BOTZ_134_13 BOTZ BOTZ_134_13 Zea mays ssp. parviglumis México
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+parviglumis_BZUL_135_11 BZUL BZUL_135_11 Zea mays ssp. parviglumis México
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+parviglumis_BZUL_135_13 BZUL BZUL_135_13 Zea mays ssp. parviglumis México
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+parviglumis_BZUL_135_7 BZUL BZUL_135_7 Zea mays ssp. parviglumis México
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+parviglumis_BZUL_136_10 BZUL BZUL_136_10 Zea mays ssp. parviglumis México
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+parviglumis_BZUL_136_13 BZUL BZUL_136_13 Zea mays ssp. parviglumis México
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+parviglumis_BVBR_137_10 BVBR BVBR_137_10 Zea mays ssp. parviglumis México
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+parviglumis_BVBR_137_7 BVBR BVBR_137_7 Zea mays ssp. parviglumis México
+parviglumis_BVBR_137_8 BVBR BVBR_137_8 Zea mays ssp. parviglumis México
+parviglumis_BVBR_137_9 BVBR BVBR_137_9 Zea mays ssp. parviglumis México
+parviglumis_BVBR_138_11 BVBR BVBR_138_11 Zea mays ssp. parviglumis México
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+parviglumis_BTAL_139_10 BTAL BTAL_139_10 Zea mays ssp. parviglumis México
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+parviglumis_BTAL_140_9 BTAL BTAL_140_9 Zea mays ssp. parviglumis México
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+parviglumis_BPCH_141_585 BPCH BPCH_141_585 Zea mays ssp. parviglumis México
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+parviglumis_BGUA_87_12 BGUA BGUA_87_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_13 BGUA BGUA_87_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_14 BGUA BGUA_87_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_15 BGUA BGUA_87_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_16 BGUA BGUA_87_16 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_18 BGUA BGUA_87_18 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_19 BGUA BGUA_87_19 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_1 BGUA BGUA_87_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_20 BGUA BGUA_87_20 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_21 BGUA BGUA_87_21 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_22 BGUA BGUA_87_22 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_23 BGUA BGUA_87_23 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_24 BGUA BGUA_87_24 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_25 BGUA BGUA_87_25 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_26 BGUA BGUA_87_26 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_27 BGUA BGUA_87_27 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_28 BGUA BGUA_87_28 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_29 BGUA BGUA_87_29 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_2 BGUA BGUA_87_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_30 BGUA BGUA_87_30 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_4 BGUA BGUA_87_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_5 BGUA BGUA_87_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_638 BGUA BGUA_87_638 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_7 BGUA BGUA_87_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_87_8 BGUA BGUA_87_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_10 BQUE BQUE_88_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_11 BQUE BQUE_88_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_12 BQUE BQUE_88_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_13 BQUE BQUE_88_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_14 BQUE BQUE_88_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_15 BQUE BQUE_88_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_1 BQUE BQUE_88_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_2 BQUE BQUE_88_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_4 BQUE BQUE_88_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_5 BQUE BQUE_88_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_6 BQUE BQUE_88_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_7 BQUE BQUE_88_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_8 BQUE BQUE_88_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BQUE_88_9 BQUE BQUE_88_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_89_10 BGUA BGUA_89_10 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_11 BGUA BGUA_89_11 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_12 BGUA BGUA_89_12 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_13 BGUA BGUA_89_13 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_14 BGUA BGUA_89_14 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_15 BGUA BGUA_89_15 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_1 BGUA BGUA_89_1 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_2 BGUA BGUA_89_2 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_3 BGUA BGUA_89_3 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_4 BGUA BGUA_89_4 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_5 BGUA BGUA_89_5 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_6 BGUA BGUA_89_6 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_7 BGUA BGUA_89_7 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_8 BGUA BGUA_89_8 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_89_9 BGUA BGUA_89_9 Zea mays ssp. parviglumis Nayarit
+parviglumis_BGUA_90_10 BGUA BGUA_90_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_11 BGUA BGUA_90_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_12 BGUA BGUA_90_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_14 BGUA BGUA_90_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_15 BGUA BGUA_90_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_1 BGUA BGUA_90_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_2 BGUA BGUA_90_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_3 BGUA BGUA_90_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_4 BGUA BGUA_90_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_5 BGUA BGUA_90_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_6 BGUA BGUA_90_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_7 BGUA BGUA_90_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_8 BGUA BGUA_90_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BGUA_90_9 BGUA BGUA_90_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_10 BEJU BEJU_91_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_13 BEJU BEJU_91_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_14 BEJU BEJU_91_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_15 BEJU BEJU_91_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_108 BEJU BEJU_91_108 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_216 BEJU BEJU_91_216 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_3 BEJU BEJU_91_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_4 BEJU BEJU_91_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_5 BEJU BEJU_91_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_6 BEJU BEJU_91_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_7 BEJU BEJU_91_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_8 BEJU BEJU_91_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_91_9 BEJU BEJU_91_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_10 BEJU BEJU_92_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_11 BEJU BEJU_92_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_12 BEJU BEJU_92_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_13 BEJU BEJU_92_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_14 BEJU BEJU_92_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_1 BEJU BEJU_92_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_3 BEJU BEJU_92_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_4 BEJU BEJU_92_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_5 BEJU BEJU_92_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_6 BEJU BEJU_92_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_7 BEJU BEJU_92_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_8 BEJU BEJU_92_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_92_9 BEJU BEJU_92_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_10 BEJU BEJU_93_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_11 BEJU BEJU_93_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_12 BEJU BEJU_93_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_13 BEJU BEJU_93_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_15 BEJU BEJU_93_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_1 BEJU BEJU_93_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_2 BEJU BEJU_93_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_3 BEJU BEJU_93_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_4 BEJU BEJU_93_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_5 BEJU BEJU_93_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_6 BEJU BEJU_93_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_7 BEJU BEJU_93_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_8 BEJU BEJU_93_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_93_9 BEJU BEJU_93_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_10 BEJU BEJU_94_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_11 BEJU BEJU_94_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_12 BEJU BEJU_94_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_13 BEJU BEJU_94_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_14 BEJU BEJU_94_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_15 BEJU BEJU_94_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_4 BEJU BEJU_94_4 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_5 BEJU BEJU_94_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_6 BEJU BEJU_94_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_7 BEJU BEJU_94_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_8 BEJU BEJU_94_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_94_9 BEJU BEJU_94_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_10 BEJU BEJU_95_10 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_11 BEJU BEJU_95_11 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_12 BEJU BEJU_95_12 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_13 BEJU BEJU_95_13 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_14 BEJU BEJU_95_14 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_15 BEJU BEJU_95_15 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_1 BEJU BEJU_95_1 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_2 BEJU BEJU_95_2 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_3 BEJU BEJU_95_3 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_448 BEJU BEJU_95_448 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_5 BEJU BEJU_95_5 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_6 BEJU BEJU_95_6 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_7 BEJU BEJU_95_7 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_8 BEJU BEJU_95_8 Zea mays ssp. parviglumis Jalisco
+parviglumis_BEJU_95_9 BEJU BEJU_95_9 Zea mays ssp. parviglumis Jalisco
+parviglumis_MALI_96_10 MALI MALI_96_10 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_11 MALI MALI_96_11 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_12 MALI MALI_96_12 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_13 MALI MALI_96_13 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_14 MALI MALI_96_14 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_15 MALI MALI_96_15 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_1 MALI MALI_96_1 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_2 MALI MALI_96_2 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_3 MALI MALI_96_3 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_4 MALI MALI_96_4 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_5 MALI MALI_96_5 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_6 MALI MALI_96_6 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_7 MALI MALI_96_7 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_8 MALI MALI_96_8 Zea mays ssp. parviglumis México
+parviglumis_MALI_96_9 MALI MALI_96_9 Zea mays ssp. parviglumis México
+parviglumis_BMOR_97_10 BMOR BMOR_97_10 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_12 BMOR BMOR_97_12 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_13 BMOR BMOR_97_13 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_1 BMOR BMOR_97_1 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_2 BMOR BMOR_97_2 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_3 BMOR BMOR_97_3 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_4 BMOR BMOR_97_4 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_5 BMOR BMOR_97_5 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_6 BMOR BMOR_97_6 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_7 BMOR BMOR_97_7 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_97_9 BMOR BMOR_97_9 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_98_1 BMOR BMOR_98_1 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_98_2 BMOR BMOR_98_2 Zea mays ssp. parviglumis Morelos
+parviglumis_BMOR_98_3 BMOR BMOR_98_3 Zea mays ssp. parviglumis Morelos
+parviglumis_BIXC_99_10 BIXC BIXC_99_10 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_11 BIXC BIXC_99_11 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_12 BIXC BIXC_99_12 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_13 BIXC BIXC_99_13 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_14 BIXC BIXC_99_14 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_1 BIXC BIXC_99_1 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_2 BIXC BIXC_99_2 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_3 BIXC BIXC_99_3 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_4 BIXC BIXC_99_4 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_5 BIXC BIXC_99_5 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_6 BIXC BIXC_99_6 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_7 BIXC BIXC_99_7 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_8 BIXC BIXC_99_8 Zea mays ssp. parviglumis Guerrero
+parviglumis_BIXC_99_9 BIXC BIXC_99_9 Zea mays ssp. parviglumis Guerrero
diff --git a/workflows/genetic_diversity/vcftools_analysis/het_analysis.sh b/workflows/genetic_diversity/vcftools_analysis/het_analysis.sh
new file mode 100644
index 0000000000000000000000000000000000000000..8791bb7dd8e42cbd2f9d4579f4af411aab846e0b
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/het_analysis.sh
@@ -0,0 +1,3 @@
+vcftools --vcf ../../../TEOSINTE/initial_data/data/genetic/filtered/bytaxa_mexicana.vcf --het --out mexicana
+vcftools --vcf ../../../TEOSINTE/analyses/phylogeny_based_GBS/data_out/plink2vcf_out/T3604_33929_all.vcf --het --out T3604_33929
+vcftools --vcf ../../../TEOSINTE/initial_data/data/genetic/filtered/bytaxa_parviglumis.vcf --het --out parviglumis
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.het b/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.het
new file mode 100644
index 0000000000000000000000000000000000000000..2ce6756c7c32315a4239e01015bb6b1443662093
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.het
@@ -0,0 +1,3605 @@
+INDV O(HOM) E(HOM) N_SITES F
+parviglumis_BIXC_100_10 24493 21245.7 30089 0.36720
+parviglumis_BIXC_100_11 23672 21494.3 30436 0.24354
+parviglumis_BIXC_100_12 27699 22183.5 31426 0.59676
+parviglumis_BIXC_100_13 25508 22259.4 31542 0.34996
+parviglumis_BIXC_100_15 25164 23392.6 33135 0.18182
+parviglumis_BIXC_100_1 24762 22430.7 31774 0.24952
+parviglumis_BIXC_100_2 25082 22742.7 32219 0.24686
+parviglumis_BIXC_100_3 25821 22411.8 31750 0.36508
+parviglumis_BIXC_100_4 24347 22373.9 31693 0.21172
+parviglumis_BIXC_100_5 24408 22254.8 31532 0.23210
+parviglumis_BIXC_100_7 24751 22752.7 32242 0.21059
+parviglumis_BIXC_100_8 24933 22598.2 32021 0.24778
+parviglumis_BIXC_100_9 23182 21192.9 30023 0.22527
+parviglumis_BIXC_101_10 23965 22061.4 31246 0.20726
+parviglumis_BIXC_101_11 26190 22647.0 32095 0.37500
+parviglumis_BIXC_101_12 25538 20429.3 28936 0.60055
+parviglumis_BIXC_101_13 24222 22168.7 31408 0.22223
+parviglumis_BIXC_101_14 24747 22865.1 32384 0.19770
+parviglumis_BIXC_101_15 24564 22969.5 32540 0.16661
+parviglumis_BIXC_101_1 25359 23069.1 32672 0.23846
+parviglumis_BIXC_101_2 24397 22221.5 31488 0.23477
+parviglumis_BIXC_101_3 24176 22351.8 31666 0.19585
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diff --git a/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.tsv b/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..2ce6756c7c32315a4239e01015bb6b1443662093
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/.ipynb_checkpoints/T3604_33929-checkpoint.tsv
@@ -0,0 +1,3605 @@
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diff --git a/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.het b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.het
new file mode 100644
index 0000000000000000000000000000000000000000..2ce6756c7c32315a4239e01015bb6b1443662093
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.het
@@ -0,0 +1,3605 @@
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+parviglumis_BGUA_89_9 26463 22533.6 31900 0.41952
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+mexicana_DURA_8_4 25613 22112.0 31309 0.38066
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+mexicana_DURA_8_8 24678 20914.5 29629 0.43187
+mexicana_DURA_8_9 26704 22777.3 32250 0.41453
+parviglumis_BGUA_90_10 25267 23135.2 32767 0.22133
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+parviglumis_BGUA_90_12 25985 22779.4 32269 0.33780
+parviglumis_BGUA_90_14 25564 23391.0 33129 0.22315
+parviglumis_BGUA_90_15 25402 22674.3 32120 0.28878
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+parviglumis_BGUA_90_3 26001 23388.9 33126 0.26826
+parviglumis_BGUA_90_4 25616 23422.4 33167 0.22511
+parviglumis_BGUA_90_5 27094 23208.6 32868 0.40224
+parviglumis_BGUA_90_6 26520 23225.5 32897 0.34064
+parviglumis_BGUA_90_7 25802 23142.3 32775 0.27611
+parviglumis_BGUA_90_8 25184 22922.0 32472 0.23686
+parviglumis_BGUA_90_9 25171 22866.2 32386 0.24210
+parviglumis_BEJU_91_10 25956 21838.4 30932 0.45280
+parviglumis_BEJU_91_13 26119 22568.8 31960 0.37803
+parviglumis_BEJU_91_14 26347 22940.4 32484 0.35695
+parviglumis_BEJU_91_15 25595 23199.4 32856 0.24808
+parviglumis_BEJU_91_108 26175 22040.9 31220 0.45038
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+parviglumis_BEJU_91_3 25761 21984.8 31151 0.41197
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+parviglumis_BEJU_91_5 23822 19942.4 28244 0.46733
+parviglumis_BEJU_91_6 24162 20666.3 29284 0.40564
+parviglumis_BEJU_91_7 24470 20902.2 29599 0.41024
+parviglumis_BEJU_91_8 26836 23311.0 33019 0.36310
+parviglumis_BEJU_91_9 24167 20546.8 29104 0.42306
+parviglumis_BEJU_92_10 28757 22641.9 32060 0.64929
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+parviglumis_BEJU_92_14 24542 22219.4 31468 0.25113
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+parviglumis_BEJU_92_9 25094 22561.7 31955 0.26958
+parviglumis_BEJU_93_10 26043 20891.2 29599 0.59163
+parviglumis_BEJU_93_11 27528 21879.8 31002 0.61917
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+parviglumis_BEJU_93_7 23665 18490.2 26215 0.66990
+parviglumis_BEJU_93_8 30213 22788.1 32270 0.78306
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+parviglumis_BEJU_94_9 26572 21250.3 30082 0.60257
+parviglumis_BEJU_95_10 28114 22279.3 31557 0.62890
+parviglumis_BEJU_95_11 28957 22937.0 32490 0.63017
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+parviglumis_BEJU_95_13 28075 22660.3 32089 0.57428
+parviglumis_BEJU_95_14 27556 22966.9 32527 0.48002
+parviglumis_BEJU_95_15 25913 19586.3 27745 0.77545
+parviglumis_BEJU_95_1 28083 22625.3 32043 0.57952
+parviglumis_BEJU_95_2 28279 21984.1 31153 0.68655
+parviglumis_BEJU_95_3 30380 22621.0 32037 0.82402
+parviglumis_BEJU_95_448 27883 22987.1 32555 0.51170
+parviglumis_BEJU_95_5 28804 22906.2 32437 0.61882
+parviglumis_BEJU_95_6 30792 22485.5 31835 0.88844
+parviglumis_BEJU_95_7 27460 21887.8 31014 0.61057
+parviglumis_BEJU_95_8 27328 22782.8 32267 0.47924
+parviglumis_BEJU_95_9 24853 19492.6 27664 0.65599
+parviglumis_MALI_96_10 24900 21337.6 30220 0.40106
+parviglumis_MALI_96_11 25072 20601.1 29204 0.51970
+parviglumis_MALI_96_12 25305 21506.8 30468 0.42385
+parviglumis_MALI_96_13 25569 22867.7 32386 0.28380
+parviglumis_MALI_96_14 24753 22371.0 31687 0.25569
+parviglumis_MALI_96_15 26004 22332.1 31621 0.39530
+parviglumis_MALI_96_1 25283 21602.5 30618 0.40824
+parviglumis_MALI_96_2 26571 23054.7 32657 0.36619
+parviglumis_MALI_96_3 25104 21663.3 30674 0.38185
+parviglumis_MALI_96_4 25268 21820.6 30915 0.37907
+parviglumis_MALI_96_5 23992 20256.0 28712 0.44182
+parviglumis_MALI_96_6 25562 22198.3 31447 0.36370
+parviglumis_MALI_96_7 25266 21563.7 30553 0.41185
+parviglumis_MALI_96_8 22082 18539.9 26272 0.45810
+parviglumis_MALI_96_9 25029 21350.4 30240 0.41381
+parviglumis_BMOR_97_10 26453 22040.5 31220 0.48069
+parviglumis_BMOR_97_12 26550 22798.3 32279 0.39572
+parviglumis_BMOR_97_13 26227 22158.5 31374 0.44149
+parviglumis_BMOR_97_1 25248 23237.6 32907 0.20791
+parviglumis_BMOR_97_2 27072 22855.1 32368 0.44328
+parviglumis_BMOR_97_3 25362 21428.0 30347 0.44108
+parviglumis_BMOR_97_4 27318 22928.5 32471 0.45999
+parviglumis_BMOR_97_5 27268 22645.2 32075 0.49024
+parviglumis_BMOR_97_6 25712 21641.3 30651 0.45181
+parviglumis_BMOR_97_7 26754 22655.4 32082 0.43479
+parviglumis_BMOR_97_9 23031 22887.2 32422 0.01508
+parviglumis_BMOR_98_1 26305 21948.5 31071 0.47755
+parviglumis_BMOR_98_2 26630 22937.8 32476 0.38709
+parviglumis_BMOR_98_3 25992 21771.3 30823 0.46629
+parviglumis_BIXC_99_10 24693 23220.5 32890 0.15228
+parviglumis_BIXC_99_11 24454 22393.3 31724 0.22085
+parviglumis_BIXC_99_12 25705 21679.1 30718 0.44540
+parviglumis_BIXC_99_13 24568 22644.4 32088 0.20370
+parviglumis_BIXC_99_14 24988 22748.2 32221 0.23644
+parviglumis_BIXC_99_1 26141 22728.5 32202 0.36022
+parviglumis_BIXC_99_2 26159 23148.1 32789 0.31230
+parviglumis_BIXC_99_3 24808 21794.0 30874 0.33194
+parviglumis_BIXC_99_4 27175 21607.2 30589 0.61990
+parviglumis_BIXC_99_5 26217 22551.6 31930 0.39083
+parviglumis_BIXC_99_6 24621 22369.5 31672 0.24203
+parviglumis_BIXC_99_7 26848 23047.0 32640 0.39623
+parviglumis_BIXC_99_8 23584 21524.1 30503 0.22942
+parviglumis_BIXC_99_9 20789 18637.2 26426 0.27626
+mexicana_NDUR_9_10 29541 22611.2 32020 0.73652
+mexicana_NDUR_9_11 27394 21526.1 30498 0.65403
+mexicana_NDUR_9_12 26532 20729.9 29371 0.67145
+mexicana_NDUR_9_13 28487 21990.8 31152 0.70910
+mexicana_NDUR_9_1403 29108 22773.4 32253 0.66823
+mexicana_NDUR_9_15 28613 22400.6 31715 0.66697
+mexicana_NDUR_9_1 27300 20931.3 29658 0.72979
+mexicana_NDUR_9_2 28400 22263.3 31522 0.66281
+mexicana_NDUR_9_3 26742 21170.7 29989 0.63179
+mexicana_NDUR_9_4 26627 20540.0 29098 0.71127
+mexicana_NDUR_9_5 28398 22395.9 31714 0.64413
+mexicana_NDUR_9_6 29157 21787.6 30859 0.81238
+mexicana_NDUR_9_7 27823 21860.5 30966 0.65482
+mexicana_NDUR_9_8 27965 21885.6 31010 0.66628
+mexicana_NDUR_9_9 28786 22460.3 31795 0.67765
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.log b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.log
new file mode 100644
index 0000000000000000000000000000000000000000..da87aa40d15d7f6092fd9e481fb5d397fb206cd7
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.log
@@ -0,0 +1,14 @@
+
+VCFtools - 0.1.16
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+ --vcf ../../../TEOSINTE/analyses/phylogeny_based_GBS/data_out/plink2vcf_out/T3604_33929_all.vcf
+ --het
+ --out T3604_33929
+
+Warning: Expected at least 2 parts in INFO entry: ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome">
+After filtering, kept 3604 out of 3604 Individuals
+Outputting Individual Heterozygosity
+After filtering, kept 33929 out of a possible 33929 Sites
+Run Time = 13.00 seconds
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.tsv b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.tsv
new file mode 100644
index 0000000000000000000000000000000000000000..2ce6756c7c32315a4239e01015bb6b1443662093
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/T3604_33929.tsv
@@ -0,0 +1,3605 @@
+INDV O(HOM) E(HOM) N_SITES F
+parviglumis_BIXC_100_10 24493 21245.7 30089 0.36720
+parviglumis_BIXC_100_11 23672 21494.3 30436 0.24354
+parviglumis_BIXC_100_12 27699 22183.5 31426 0.59676
+parviglumis_BIXC_100_13 25508 22259.4 31542 0.34996
+parviglumis_BIXC_100_15 25164 23392.6 33135 0.18182
+parviglumis_BIXC_100_1 24762 22430.7 31774 0.24952
+parviglumis_BIXC_100_2 25082 22742.7 32219 0.24686
+parviglumis_BIXC_100_3 25821 22411.8 31750 0.36508
+parviglumis_BIXC_100_4 24347 22373.9 31693 0.21172
+parviglumis_BIXC_100_5 24408 22254.8 31532 0.23210
+parviglumis_BIXC_100_7 24751 22752.7 32242 0.21059
+parviglumis_BIXC_100_8 24933 22598.2 32021 0.24778
+parviglumis_BIXC_100_9 23182 21192.9 30023 0.22527
+parviglumis_BIXC_101_10 23965 22061.4 31246 0.20726
+parviglumis_BIXC_101_11 26190 22647.0 32095 0.37500
+parviglumis_BIXC_101_12 25538 20429.3 28936 0.60055
+parviglumis_BIXC_101_13 24222 22168.7 31408 0.22223
+parviglumis_BIXC_101_14 24747 22865.1 32384 0.19770
+parviglumis_BIXC_101_15 24564 22969.5 32540 0.16661
+parviglumis_BIXC_101_1 25359 23069.1 32672 0.23846
+parviglumis_BIXC_101_2 24397 22221.5 31488 0.23477
+parviglumis_BIXC_101_3 24176 22351.8 31666 0.19585
+parviglumis_BIXC_101_4 25045 23377.0 33119 0.17122
+parviglumis_BIXC_101_5 24922 23153.8 32797 0.18336
+parviglumis_BIXC_101_6 24603 22642.9 32073 0.20785
+parviglumis_BIXC_101_7 24937 23458.1 33219 0.15152
+parviglumis_BIXC_101_8 29059 22526.9 31902 0.69675
+parviglumis_BIXC_101_9 27914 22661.0 32102 0.55640
+parviglumis_BZAC_102_11 25298 23469.3 33244 0.18709
+parviglumis_BZAC_102_12 25608 23350.9 33075 0.23211
+parviglumis_BZAC_102_13 24652 22561.7 31949 0.22267
+parviglumis_BZAC_102_14 24401 22486.8 31848 0.20449
+parviglumis_BZAC_102_15 20227 17994.4 25561 0.29506
+parviglumis_BZAC_102_1 22513 20365.0 28878 0.25232
+parviglumis_BZAC_102_2 24499 22384.4 31713 0.22668
+parviglumis_BZAC_102_4 24872 22685.6 32124 0.23165
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diff --git a/workflows/genetic_diversity/vcftools_analysis/results/mexicana.het b/workflows/genetic_diversity/vcftools_analysis/results/mexicana.het
new file mode 100644
index 0000000000000000000000000000000000000000..a82dc47b1b0047755cfb2c7e221f656c2eb246c7
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/mexicana.het
@@ -0,0 +1,1386 @@
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+CHAL_74_26 20050 18481.3 25429 0.22578
+CHAL_74_27 19921 18280.2 25154 0.23870
+CHAL_74_28 19908 18506.9 25464 0.20139
+CHAL_74_29 20133 18655.3 25655 0.21111
+CHAL_74_2 18991 17367.3 23913 0.24806
+CHAL_74_30 19806 18337.9 25230 0.21301
+CHAL_74_3 19193 17537.0 24121 0.25152
+CHAL_74_4 19782 17971.0 24725 0.26814
+CHAL_74_5 19654 18097.9 24911 0.22840
+CHAL_74_7 20049 18544.8 25513 0.21586
+CHAL_74_8 20185 18820.9 25896 0.19280
+CHAL_74_9 19719 18224.5 25066 0.21844
+CHAL_75_10 19972 18597.4 25580 0.19686
+CHAL_75_11 19072 17339.9 23856 0.26581
+CHAL_75_12 19610 17958.5 24707 0.24472
+CHAL_75_14 19947 18408.0 25325 0.22250
+CHAL_75_15 20062 18567.8 25544 0.21419
+CHAL_75_1 20166 18476.5 25429 0.24300
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+CHAL_75_5 20236 18370.2 25276 0.27018
+CHAL_75_6 19821 18177.0 25005 0.24077
+CHAL_75_7 19906 18319.6 25206 0.23036
+CHAL_75_8 20536 18416.0 25333 0.30649
+CHAL_75_9 20050 18062.0 24848 0.29296
+CHPU_76_10 20969 18303.5 25171 0.38813
+CHPU_76_11 19947 17551.5 24138 0.36369
+CHPU_76_13 19857 17541.2 24128 0.35158
+CHPU_76_14 19347 16994.2 23396 0.36752
+CHPU_76_15 19933 17599.1 24218 0.35261
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+CHPU_76_4 20715 18179.7 25009 0.37124
+CHPU_76_5 22693 18284.3 25147 0.64242
+CHPU_76_6 20634 18450.5 25382 0.31501
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+CHPU_77_10 20166 18362.8 25265 0.26126
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+CHPU_77_12 20397 18435.9 25368 0.28290
+CHPU_77_13 20795 18743.2 25780 0.29158
+CHPU_77_14 19819 17059.2 23473 0.43029
+CHPU_77_15 19676 17694.6 24334 0.29844
+CHPU_77_1 18906 16902.0 23255 0.31544
+CHPU_77_3 19004 16888.2 23249 0.33264
+CHPU_77_4 20167 18547.8 25521 0.23220
+CHPU_77_6 20636 17862.0 24582 0.41280
+CHPU_77_7 19843 17831.9 24537 0.29994
+CHPU_78_10 20223 18318.3 25214 0.27622
+CHPU_78_11 18536 16477.1 22693 0.33123
+CHPU_78_12 20121 17878.0 24599 0.33373
+CHPU_78_13 20144 18152.7 24977 0.29180
+CHPU_78_14 19766 17760.3 24433 0.30059
+CHPU_78_15 20181 18081.2 24878 0.30894
+CHPU_78_1 20079 17762.3 24431 0.34740
+CHPU_78_2 20006 17803.8 24494 0.32917
+CHPU_78_3 20021 17846.0 24545 0.32467
+CHPU_78_4 19447 17530.2 24126 0.29061
+CHPU_78_5 20321 18049.7 24840 0.33449
+CHPU_78_6 20088 17726.8 24391 0.35431
+CHPU_78_7 20200 18480.0 25432 0.24742
+CHPU_78_8 20546 17875.4 24594 0.39750
+CHPU_78_9 19452 17507.9 24073 0.29612
+CHPU_79_10 19939 18293.0 25166 0.23948
+CHPU_79_11 18338 16270.5 22393 0.33768
+CHPU_79_12 19905 17385.5 23920 0.38557
+CHPU_79_13 19802 18330.2 25211 0.21390
+CHPU_79_14 20746 18584.8 25560 0.30984
+CHPU_79_15 19445 17578.6 24198 0.28196
+CHPU_79_1 19429 17296.7 23796 0.32808
+CHPU_79_2 19135 17431.2 23995 0.25957
+CHPU_79_3 20319 18278.3 25147 0.29710
+CHPU_79_4 17693 17120.2 23582 0.08864
+CHPU_79_5 20302 18282.6 25152 0.29397
+CHPU_79_6 21984 18139.8 24949 0.56456
+CHPU_79_7 18735 18684.8 25700 0.00716
+CHPU_79_8 19760 17635.7 24254 0.32098
+DURA_7_10 19860 17622.1 24253 0.33749
+DURA_7_11 19110 16840.8 23167 0.35870
+DURA_7_12 18755 16476.9 22687 0.36684
+DURA_7_13 19840 16927.9 23283 0.45823
+DURA_7_14 19778 17152.2 23613 0.40642
+DURA_7_15 19929 16979.7 23372 0.46138
+DURA_7_1 20800 18489.3 25431 0.33287
+DURA_7_2 21112 18586.0 25574 0.36148
+DURA_7_3 19211 16730.9 23004 0.39535
+DURA_7_4 19831 17637.4 24265 0.33097
+DURA_7_5 20011 17849.5 24545 0.32282
+DURA_7_6 19693 17177.7 23636 0.38947
+DURA_7_7 19679 17489.6 24077 0.33236
+DURA_7_8 20700 18247.2 25103 0.35777
+DURA_7_9 20786 18200.1 25041 0.37800
+CHPU_80_10 20219 18515.7 25466 0.24507
+CHPU_80_11 19723 18076.6 24861 0.24267
+CHPU_80_12 20208 18368.3 25286 0.26595
+CHPU_80_13 20015 18552.3 25521 0.20989
+CHPU_80_14 19324 16963.4 23358 0.36915
+CHPU_80_15 20676 18309.9 25192 0.34380
+CHPU_80_16 20181 18311.6 25190 0.27177
+CHPU_80_17 19852 18141.8 24967 0.25057
+CHPU_80_18 20043 18090.9 24891 0.28707
+CHPU_80_19 20524 18521.5 25483 0.28765
+CHPU_80_1 20805 17737.1 24405 0.46010
+CHPU_80_20 21043 18408.3 25330 0.38065
+CHPU_80_21 19444 17554.7 24165 0.28581
+CHPU_80_22 20231 18356.5 25258 0.27161
+CHPU_80_23 19880 17765.7 24444 0.31659
+CHPU_80_24 19886 18377.5 25278 0.21860
+CHPU_80_25 19650 17817.2 24502 0.27417
+CHPU_80_26 19818 17787.5 24477 0.30354
+CHPU_80_27 19285 17357.0 23889 0.29517
+CHPU_80_28 20090 18016.5 24787 0.30625
+CHPU_80_29 19658 17371.7 23911 0.34963
+CHPU_80_2 21349 18242.8 25095 0.45331
+CHPU_80_30 19138 17299.1 23810 0.28243
+CHPU_80_383 18669 16878.5 23241 0.28142
+CHPU_80_4 19526 17196.7 23659 0.36044
+CHPU_80_5 18532 16648.7 22929 0.29988
+CHPU_80_6 21566 17784.2 24469 0.56573
+CHPU_80_7 19848 18050.0 24837 0.26492
+CHPU_80_8 18657 16740.4 23048 0.30385
+CHPU_80_9 19973 18407.3 25327 0.22626
+TLAX_81_10 20849 17835.4 24532 0.45002
+TLAX_81_14 20235 17954.2 24700 0.33811
+TLAX_81_15 19146 16765.3 23091 0.37635
+TLAX_81_2 19880 17787.5 24480 0.31266
+TLAX_81_3 19929 17848.3 24548 0.31056
+TLAX_81_4 19352 16568.0 22805 0.44637
+TLAX_81_6 21696 17361.2 23890 0.66395
+TLAX_81_7 19822 17765.6 24452 0.30755
+TLAX_81_9 19841 17850.0 24565 0.29650
+SNRA_82_10 20329 17600.3 24220 0.41221
+SNRA_82_11 22525 18162.9 24977 0.64016
+SNRA_82_12 20599 18325.2 25199 0.33079
+SNRA_82_13 19494 17418.4 23963 0.31715
+SNRA_82_14 19721 17840.3 24559 0.27992
+SNRA_82_1 19723 17742.5 24401 0.29743
+SNRA_82_2 21536 18166.1 24985 0.49420
+SNRA_82_3 19395 17425.5 23981 0.30043
+SNRA_82_4 20424 18545.5 25506 0.26988
+SNRA_82_5 20230 18063.2 24845 0.31950
+SNRA_82_6 18554 16342.4 22502 0.35904
+SNRA_82_7 20434 18334.9 25220 0.30488
+SNRA_82_8 20293 17874.2 24597 0.35979
+SNRA_82_9 20639 18326.0 25207 0.33614
+DURA_8_10 20923 18457.6 25388 0.35573
+DURA_8_11 20091 17810.1 24498 0.34105
+DURA_8_12 20395 17858.7 24579 0.37741
+DURA_8_13 20369 17707.2 24356 0.40034
+DURA_8_14 20974 18229.0 25081 0.40061
+DURA_8_15 20483 17943.9 24676 0.37716
+DURA_8_1 20203 17807.5 24508 0.35751
+DURA_8_2 20143 17938.8 24683 0.32683
+DURA_8_3 20221 17749.2 24410 0.37109
+DURA_8_4 20294 18164.0 24991 0.31199
+DURA_8_5 20076 17703.6 24355 0.35668
+DURA_8_6 19813 17342.2 23858 0.37920
+DURA_8_7 19681 17449.7 24023 0.33944
+DURA_8_8 19855 17437.1 24000 0.36842
+DURA_8_9 20956 18494.1 25439 0.35449
+NDUR_9_10 23360 18433.4 25361 0.71116
+NDUR_9_11 21920 17782.1 24469 0.61881
+NDUR_9_12 21472 17313.0 23831 0.63808
+NDUR_9_13 22735 18122.7 24936 0.67695
+NDUR_9_1403 22979 18528.1 25489 0.63941
+NDUR_9_15 22668 18321.8 25193 0.63253
+NDUR_9_1 22182 17545.0 24141 0.70300
+NDUR_9_2 22583 18282.5 25146 0.62658
+NDUR_9_3 21558 17622.7 24240 0.59470
+NDUR_9_4 21714 17312.1 23826 0.67577
+NDUR_9_5 22481 18336.6 25222 0.60191
+NDUR_9_6 23277 17922.1 24645 0.79652
+NDUR_9_7 22253 18060.1 24853 0.61725
+NDUR_9_8 22357 18095.0 24901 0.62621
+NDUR_9_9 22841 18370.5 25262 0.64870
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/mexicana.log b/workflows/genetic_diversity/vcftools_analysis/results/mexicana.log
new file mode 100644
index 0000000000000000000000000000000000000000..6cc2eaf5246911d3d0fbd559991f47df1b12a78b
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/mexicana.log
@@ -0,0 +1,15 @@
+
+VCFtools - 0.1.16
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+ --vcf ../../../TEOSINTE/initial_data/data/genetic/filtered/bytaxa_mexicana.vcf
+ --het
+ --out mexicana
+
+Warning: Expected at least 2 parts in INFO entry: ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome">
+After filtering, kept 1385 out of 1385 Individuals
+Outputting Individual Heterozygosity
+ Individual Heterozygosity: Only using biallelic SNPs.
+After filtering, kept 26230 out of a possible 26230 Sites
+Run Time = 5.00 seconds
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.het b/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.het
new file mode 100644
index 0000000000000000000000000000000000000000..002e0a1e7089b84f933e1d9e0dbc630c5c9ebaf8
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.het
@@ -0,0 +1,1770 @@
+INDV O(HOM) E(HOM) N_SITES F
+BIXC_100_10 22045 19185.1 27183 0.35758
+BIXC_100_11 21202 19377.1 27455 0.22591
+BIXC_100_12 24776 19892.3 28194 0.58828
+BIXC_100_13 22853 20009.9 28358 0.34057
+BIXC_100_15 22339 20854.3 29544 0.17085
+BIXC_100_1 22115 20149.9 28548 0.23400
+BIXC_100_2 22303 20373.6 28867 0.22717
+BIXC_100_3 23064 20105.4 28479 0.35332
+BIXC_100_4 21704 20047.8 28409 0.19808
+BIXC_100_5 21768 19960.0 28282 0.21726
+BIXC_100_7 22075 20377.0 28883 0.19962
+BIXC_100_8 22186 20230.9 28672 0.23162
+BIXC_100_9 20808 19139.8 27122 0.20899
+BIXC_101_10 21411 19836.2 28100 0.19057
+BIXC_101_11 23370 20297.7 28759 0.36310
+BIXC_101_12 23110 18524.4 26252 0.59340
+BIXC_101_13 21710 19996.6 28330 0.20561
+BIXC_101_14 22032 20480.0 29003 0.18209
+BIXC_101_15 21819 20550.7 29117 0.14805
+BIXC_101_1 22522 20612.7 29195 0.22247
+BIXC_101_2 21787 19977.4 28322 0.21686
+BIXC_101_3 21625 20103.2 28478 0.18171
+BIXC_101_4 22220 20862.2 29554 0.15621
+BIXC_101_5 22106 20671.3 29287 0.16652
+BIXC_101_6 21936 20315.5 28777 0.19152
+BIXC_101_7 22055 20916.9 29630 0.13062
+BIXC_101_8 25999 20183.4 28578 0.69278
+BIXC_101_9 24950 20300.9 28758 0.54973
+BZAC_102_11 22410 20904.7 29615 0.17282
+BZAC_102_12 22710 20804.3 29472 0.21987
+BZAC_102_13 21992 20247.6 28683 0.20679
+BZAC_102_14 21778 20177.8 28593 0.19015
+BZAC_102_1 20378 18521.4 26273 0.23951
+BZAC_102_2 21831 20072.7 28442 0.21009
+BZAC_102_4 22160 20317.2 28777 0.21783
+BZAC_102_5 21392 19676.2 27874 0.20930
+BZAC_102_6 22098 20438.4 28952 0.19494
+BZAC_102_7 21831 20229.9 28672 0.18966
+BZAC_102_8 22151 20058.7 28417 0.25033
+BZAC_102_9 22199 20742.3 29382 0.16861
+BIXC_103_10 20178 18605.5 26366 0.20262
+BIXC_103_11 21728 19799.7 28052 0.23366
+BIXC_103_12 21886 20109.9 28490 0.21194
+BIXC_103_14 21781 19930.3 28250 0.22244
+BIXC_103_15 21700 19951.4 28263 0.21038
+BIXC_103_1 22125 20715.2 29345 0.16336
+BIXC_103_2 22226 20915.5 29623 0.15050
+BIXC_103_3 21770 20556.6 29116 0.14176
+BIXC_103_4 22006 20648.1 29244 0.15797
+BIXC_103_5 21925 20045.7 28404 0.22484
+BIXC_103_6 22058 20522.7 29069 0.17964
+BIXC_103_7 22063 20727.8 29364 0.15460
+BIXC_103_8 21841 20571.1 29148 0.14806
+BIXC_103_9 21465 19331.2 27394 0.26465
+BZAC_104_10 22649 20225.7 28645 0.28782
+BZAC_104_11 21425 18397.0 26078 0.39422
+BZAC_104_12 22908 20588.8 29171 0.27024
+BZAC_104_13 23105 20286.0 28733 0.33373
+BZAC_104_14 22676 19945.7 28250 0.32878
+BZAC_104_1 23431 19471.6 27583 0.48813
+BZAC_104_2 23323 18750.4 26579 0.58409
+BZAC_104_3 22813 20487.3 29026 0.27237
+BZAC_104_4 22632 20686.4 29304 0.22577
+BZAC_104_5 24331 20398.3 28898 0.46269
+BZAC_104_6 21180 18732.7 26562 0.31259
+BZAC_104_7 22156 19829.4 28100 0.28131
+BZAC_104_8 22801 20628.6 29220 0.25286
+BZAC_104_9 23218 20248.2 28680 0.35221
+BZAC_105_10 22952 19103.4 27058 0.48382
+BZAC_105_11 22390 20869.7 29557 0.17500
+BZAC_105_12 22307 20833.0 29502 0.17003
+BZAC_105_13 22092 20137.6 28529 0.23291
+BZAC_105_14 22142 20566.2 29130 0.18400
+BZAC_105_15 21380 19624.7 27814 0.21434
+BZAC_105_1 22115 20814.3 29480 0.15010
+BZAC_105_2 22312 20480.9 29020 0.21444
+BZAC_105_3 21587 19577.6 27746 0.24599
+BZAC_105_4 22342 20179.3 28572 0.25769
+BZAC_105_5 22409 20810.1 29478 0.18447
+BZAC_105_6 22333 19815.0 28066 0.30518
+BZAC_105_7 22190 20071.8 28439 0.25315
+BZAC_105_9 21966 20315.1 28776 0.19512
+BZAC_106_10 21973 20189.8 28604 0.21193
+BZAC_106_11 22187 20272.4 28715 0.22678
+BZAC_106_12 22775 20661.1 29270 0.24555
+BZAC_106_13 22107 20040.2 28398 0.24729
+BZAC_106_14 22782 20442.6 28956 0.27479
+BZAC_106_15 22439 20374.6 28853 0.24349
+BZAC_106_3 21472 19116.3 27104 0.29492
+BZAC_106_5 22492 20839.0 29519 0.19044
+BZAC_106_6 20584 18008.8 25514 0.34313
+BZAC_106_7 22430 20013.3 28365 0.28937
+BZAC_106_8 22318 20457.1 28977 0.21842
+BZAC_107_10 21969 20815.3 29480 0.13315
+BZAC_107_11 22269 20800.7 29466 0.16945
+BZAC_107_12 21912 19987.4 28322 0.23091
+BZAC_107_13 22221 20638.3 29228 0.18426
+BZAC_107_14 22124 20733.9 29361 0.16113
+BZAC_107_15 21541 20061.6 28418 0.17704
+BZAC_107_16 21961 20325.9 28793 0.19311
+BZAC_107_17 22097 20616.4 29201 0.17247
+BZAC_107_18 21442 20601.8 29173 0.09803
+BZAC_107_19 22052 20613.1 29209 0.16740
+BZAC_107_1 21186 19506.9 27640 0.20646
+BZAC_107_20 22021 20675.0 29281 0.15640
+BZAC_107_21 21790 20349.4 28828 0.16991
+BZAC_107_22 22060 20398.6 28891 0.19563
+BZAC_107_23 22240 20746.6 29381 0.17296
+BZAC_107_24 20971 19479.2 27603 0.18363
+BZAC_107_25 20475 19486.7 27603 0.12177
+BZAC_107_26 25586 20082.9 28453 0.65747
+BZAC_107_27 21679 20294.9 28747 0.16376
+BZAC_107_28 21222 19806.4 28058 0.17155
+BZAC_107_29 21428 20344.2 28824 0.12781
+BZAC_107_2 21566 19833.1 28092 0.20982
+BZAC_107_30 21231 19600.6 27781 0.19931
+BZAC_107_3 21589 20058.6 28415 0.18314
+BZAC_107_4 22218 20590.9 29171 0.18964
+BZAC_107_5 21675 20161.8 28557 0.18025
+BZAC_107_6 21476 19662.1 27848 0.22159
+BZAC_107_7 22194 20831.7 29504 0.15709
+BZAC_107_8 20446 18635.7 26425 0.23241
+BZAC_107_9 21785 19900.9 28201 0.22700
+BZAC_108_10 22440 20812.9 29477 0.18780
+BZAC_108_11 22055 20867.4 29554 0.13672
+BZAC_108_12 20947 19333.7 27413 0.19968
+BZAC_108_13 21832 20387.5 28883 0.17003
+BZAC_108_15 19667 17955.0 25462 0.22805
+BZAC_108_1 21402 19938.1 28250 0.17612
+BZAC_108_2 21495 19653.6 27858 0.22444
+BZAC_108_3 21571 20050.9 28408 0.18190
+BZAC_108_4 19307 17584.7 24957 0.23362
+BZAC_108_5 20994 18964.6 26881 0.25635
+BZAC_108_6 21452 19177.1 27171 0.28458
+BZAC_108_7 20105 18593.4 26349 0.19490
+BZAC_108_8 20259 18288.6 25933 0.25776
+BZAC_108_9 21890 20210.0 28638 0.19934
+BTEL_109_10 19331 18355.2 25999 0.12766
+BTEL_109_11 21942 20035.2 28367 0.22886
+BTEL_109_12 20636 18135.2 25691 0.33098
+BTEL_109_13 21494 19464.6 27584 0.24995
+BTEL_109_14 20396 18358.9 26016 0.26604
+BTEL_109_15 21959 20258.1 28690 0.20172
+BTEL_109_1 22050 20412.8 28920 0.19245
+BTEL_109_2 22170 20259.3 28710 0.22610
+BTEL_109_3 22378 20070.8 28424 0.27620
+BTEL_109_4 22471 20859.2 29552 0.18541
+BTEL_109_5 21795 19957.9 28269 0.22104
+BTEL_109_6 22037 20273.7 28724 0.20867
+BTEL_109_7 22450 20599.9 29174 0.21578
+BTEL_109_8 22002 19976.3 28310 0.24307
+BZAC_110_10 22130 19979.5 28305 0.25830
+BZAC_110_11 24067 19974.8 28286 0.49237
+BZAC_110_12 22580 19794.5 28047 0.33754
+BZAC_110_13 23168 20569.7 29127 0.30363
+BZAC_110_14 22594 20028.0 28361 0.30793
+BZAC_110_15 23067 20573.1 29141 0.29107
+BZAC_110_1 25297 19757.5 27984 0.67337
+BZAC_110_2 22892 20773.3 29428 0.24481
+BZAC_110_3 21128 20193.8 28615 0.11093
+BZAC_110_4 22560 20384.1 28866 0.25653
+BZAC_110_5 23216 20424.4 28919 0.32863
+BZAC_110_6 22449 20146.0 28542 0.27430
+BZAC_110_7 23191 20046.0 28406 0.37620
+BZAC_110_8 23089 20610.9 29192 0.28879
+BZAC_111_10 22934 19610.5 27791 0.40627
+BZAC_111_12 23012 20356.4 28841 0.31299
+BZAC_111_13 22270 20476.0 29003 0.21039
+BZAC_111_15 21589 19281.4 27324 0.28692
+BZAC_111_1 22059 20230.5 28666 0.21677
+BZAC_111_2 22208 19944.2 28253 0.27246
+BZAC_111_3 21956 19564.4 27714 0.29347
+BZAC_111_6 21864 20557.0 29126 0.15253
+BZAC_111_7 23521 20608.6 29190 0.33938
+BZAC_111_8 22429 20592.2 29171 0.21411
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diff --git a/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.log b/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.log
new file mode 100644
index 0000000000000000000000000000000000000000..5423064ebd8bdf6a194f6c58e8c1ec0f27187e27
--- /dev/null
+++ b/workflows/genetic_diversity/vcftools_analysis/results/parviglumis.log
@@ -0,0 +1,15 @@
+
+VCFtools - 0.1.16
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+ --vcf ../../../TEOSINTE/initial_data/data/genetic/filtered/bytaxa_parviglumis.vcf
+ --het
+ --out parviglumis
+
+Warning: Expected at least 2 parts in INFO entry: ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome">
+After filtering, kept 1769 out of 1769 Individuals
+Outputting Individual Heterozygosity
+ Individual Heterozygosity: Only using biallelic SNPs.
+After filtering, kept 30083 out of a possible 30083 Sites
+Run Time = 3.00 seconds
diff --git a/workflows/genetic_diversity/vcftools_analysis/results/selected_population_ave_F_values.ods b/workflows/genetic_diversity/vcftools_analysis/results/selected_population_ave_F_values.ods
new file mode 100644
index 0000000000000000000000000000000000000000..9a76ad77db58e48ad83a4ca7df607d21b75a128c
Binary files /dev/null and b/workflows/genetic_diversity/vcftools_analysis/results/selected_population_ave_F_values.ods differ
diff --git a/workflows/genetic_diversity/workflow.cwl b/workflows/genetic_diversity/workflow.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391