diff --git a/studies/processed_genotype_phenotype_teosinte_data/README.md b/studies/processed_genotype_phenotype_teosinte_data/README.md new file mode 100644 index 0000000000000000000000000000000000000000..14f99526b78cd8da8230211408bec08c03ea7f5f --- /dev/null +++ b/studies/processed_genotype_phenotype_teosinte_data/README.md @@ -0,0 +1,23 @@ +# GWAS Data for Teosinte Taxa + +This directory contains cleaned and finalized data files for conducting a Genome-Wide Association Study (GWAS) on **3,455 individuals** spanning all seven teosinte taxa. +The dataset includes climate, morphological, and genetic data, and is subsetted by taxa for targeted analyses. + +## Directory Structure + +## [Resources](`resources/gwas_data_3455_accessions`) + +### Key Files + +- **`all_taxa`** + Contains GWAS-ready data for all 3,455 teosinte individuals, combining climate, morphological, and genetic datasets. + +- **`taxa_specific`** + Subsetted GWAS-ready data files for each of the seven teosinte taxa: + - _Zea mays ssp. parviglumis_ + - _Zea mays ssp. mexicana_ + - _Zea diploperennis_ + - _Zea mays ssp. huehuetenangensis_ + - _Zea luxurians_ + - _Zea nicaraguensis_ + - _Zea perennis_ diff --git a/studies/processed_genotype_phenotype_teosinte_data/protocols/.gitkeep b/studies/processed_genotype_phenotype_teosinte_data/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/processed_genotype_phenotype_teosinte_data/resources/.gitkeep b/studies/processed_genotype_phenotype_teosinte_data/resources/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/processed_genotype_phenotype_teosinte_data/resources/gwas_data_3455_accessions/genotype/README.md b/studies/processed_genotype_phenotype_teosinte_data/resources/gwas_data_3455_accessions/genotype/README.md new file mode 100644 index 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