Binding peaks for the sample: rep_1
ucsc | chrom | start | end | top | strand | geneID | genesymbol | gtype | tss | atg | annotation | function | topcoverage | area_coverage | cg |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ucsc_link | NC_006677_621H_old | 293385 | 293870 | 293654 | + | GOX0278 | GOX0278 | upstream | 165 | 165 | cytochrome d ubiquinol oxidase subunit I | 7.639 | 4900.2 | unknown | |
ucsc_link | NC_006677_621H_old | 667664 | 668119 | 667899 | - | GOX0626 | GOX0626 | upstream | 74 | 74 | thioredoxin | 7.045 | 4025.7 | unknown | |
ucsc_link | NC_006677_621H_old | 2176891 | 2177320 | 2177099 | - | GOX1988 | GOX1988 | upstream | 160 | 160 | pyridoxamine 5'-phosphate oxidase | catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate | 6.154 | 1968.7 | unknown |
ucsc_link | NC_006675_pGOX4 | 5769 | 6171 | 5965 | + | fake | fake | intergenic | nan | nan | None | None | 13.411 | 5851.5 | unknown |
ucsc_link | NC_006677_621H_old | 2351013 | 2351688 | 2351214 | - | GOX2142 | GOX2142 | upstream | 149 | 149 | hypothetical protein | 7.215 | 4528.8 | unknown | |
ucsc_link | NC_006677_621H_old | 328161 | 328546 | 328363 | + | GOX0310 | GOX0310 | upstream | 69 | 69 | NAD(P) transhydrogenase subunit alpha | 4.286 | 1714.4 | unknown | |
ucsc_link | NC_006677_621H_old | 1174239 | 1174786 | 1174552 | - | GOX1070 | rho | upstream | 265 | 265 | transcription termination factor Rho | An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes | 5.390 | 6710.7 | unknown |
ucsc_link | NC_006677_621H_old | 751332 | 751854 | 751572 | - | GOX0691 | GOX0691 | upstream | 40 | 40 | acriflavin resistance efflux transporter | 3.989 | 8578.0 | unknown | |
ucsc_link | NC_006677_621H_old | 107121 | 107543 | 107338 | + | GOX0091 | GOX0091 | upstream | 59 | 59 | hypothetical protein | 2.801 | 968.5 | unknown | |
ucsc_link | NC_006677_621H_old | 943152 | 943594 | 943401 | - | GOX0874 | hemH | upstream | 94 | 94 | ferrochelatase | protoheme ferro-lyase catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme involved in protoheme biosynthesis in some organisms this protein is membrane-associated while in others it is cytosolic | 3.353 | 3731.7 | unknown |
ucsc_link | NC_006677_621H_old | 1644435 | 1644837 | 1644577 | + | GOX1500 | GOX1500 | upstream | -35 | -35 | hypothetical protein | 3.310 | 3334.1 | unknown | |
ucsc_link | NC_006677_621H_old | 368405 | 368844 | 368633 | - | GOX0347 | GOX0347 | upstream | -34 | -34 | hypothetical protein | 2.631 | 1175.2 | unknown | |
ucsc_link | NC_006677_621H_old | 893094 | 893585 | 893366 | + | GOX0824 | GOX0824 | upstream | -161 | -161 | protein translation initiation factor 3 | 2.843 | 2436.9 | unknown | |
ucsc_link | NC_006677_621H_old | 1559125 | 1559505 | 1559326 | + | GOX1427 | thyX | upstream | 191 | 191 | FAD-dependent thymidylate synthase | flavin dependent thymidylate synthase ThyX thymidylate synthase complementing protein catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate the enzyme from Mycobacterium tuberculosis forms homotetramers uses FAD as a cofactor | 2.080 | 970.1 | unknown |
ucsc_link | NC_006672_pGOX1 | 20995 | 21431 | 21202 | + | fake | fake | intergenic | nan | nan | None | None | 2.546 | 1007.4 | unknown |
ucsc_link | NC_006677_621H_old | 452676 | 453095 | 452873 | - | GOX0426 | GOX0426 | upstream | 712 | 712 | hypothetical protein | 1.995 | 979.5 | unknown | |
ucsc_link | NC_006677_621H_old | 659781 | 660211 | 659994 | + | GOX0617 | GOX0617 | upstream | -119 | -119 | hypothetical protein | 2.122 | 1295.7 | unknown | |
ucsc_link | NC_006677_621H_old | 198806 | 199165 | 198991 | - | GOX0182 | GOX0182 | upstream | 141 | 141 | hypothetical protein | 2.164 | 543.3 | unknown | |
ucsc_link | NC_006677_621H_old | 1214993 | 1215395 | 1215184 | - | GOX1107 | GOX1107 | upstream | 19 | 19 | O-antigen biosynthesis protein RfbC | 2.546 | 1830.4 | unknown | |
ucsc_link | NC_006677_621H_old | 2256834 | 2257298 | 2257062 | - | GOX2060 | GOX2060 | upstream | -26 | -26 | hypothetical protein | 1.995 | 803.6 | unknown | |
ucsc_link | NC_006677_621H_old | 528340 | 528805 | 528545 | + | GOX0506 | GOX0506 | upstream | 162 | 162 | RNA polymerase factor sigma-32 | binds with the catalytic core of RNA polymerase to produce the holoenzyme this sigma factor is responsible for the expression of heat shock promoters | 2.504 | 1968.6 | unknown |
ucsc_link | NC_006677_621H_old | 1662018 | 1662397 | 1662259 | + | GOX1508 | GOX1508 | upstream | 511 | 511 | hypothetical protein | 2.207 | 735.9 | unknown | |
ucsc_link | NC_006677_621H_old | 910413 | 910831 | 910622 | - | GOX0843 | GOX0843 | upstream | -116 | -116 | ADP-ribose pyrophosphatase | 2.164 | 1067.8 | unknown | |
ucsc_link | NC_006677_621H_old | 448658 | 449078 | 448934 | - | GOX0423 | fliG | upstream | 143 | 143 | flagellar motor switch protein G | One of three proteins involved in switching the direction of the flagellar rotation | 2.080 | 759.9 | unknown |
ucsc_link | NC_006677_621H_old | 698491 | 698882 | 698672 | + | GOX0649 | GOX0649 | upstream | 109 | 109 | sugar-proton symporter | 2.164 | 2193.2 | unknown | |
ucsc_link | NC_006677_621H_old | 1188365 | 1188804 | 1188605 | - | GOX1082 | GOX1082 | upstream | 24 | 24 | hypothetical protein | 2.377 | 1554.1 | unknown | |
ucsc_link | NC_006677_621H_old | 946364 | 946912 | 946613 | - | GOX0877 | murQ | upstream | 395 | 395 | N-acetylmuramic acid 6-phosphate etherase | catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate involved in MurNAc dissimilation pathway | 2.249 | 1465.8 | unknown |
ucsc_link | NC_006677_621H_old | 1075884 | 1076289 | 1076015 | + | GOX0978 | GOX0978 | upstream | 222 | 222 | bifunctional riboflavin biosynthesis protein RibD | 2.759 | 2976.2 | unknown | |
ucsc_link | NC_006677_621H_old | 1228742 | 1229129 | 1228908 | + | GOX1122 | GOX1122 | upstream | -144 | -144 | NAD-dependent aldehyde dehydrogenase | 1.782 | 3085.1 | unknown | |
ucsc_link | NC_006677_621H_old | 1229742 | 1230149 | 1229958 | + | GOX1122 | GOX1122 | gene | -1194 | -1194 | NAD-dependent aldehyde dehydrogenase | 2.334 | 3085.1 | unknown | |
ucsc_link | NC_006677_621H_old | 1410569 | 1410960 | 1410768 | + | GOX1286 | GOX1286 | upstream | 159 | 159 | hypothetical protein | 2.122 | 956.6 | unknown | |
ucsc_link | NC_006677_621H_old | 1567132 | 1567574 | 1567297 | - | GOX1433 | GOX1433 | gene | -797 | -797 | DnaJ-like protein | 2.504 | 1931.9 | unknown | |
ucsc_link | NC_006677_621H_old | 1829567 | 1829927 | 1829736 | + | GOX1672 | GOX1672 | upstream | -11 | -11 | tRNA-Gly | 1.995 | 668.4 | unknown | |
ucsc_link | NC_006677_621H_old | 1351201 | 1351659 | 1351394 | + | GOX1241 | GOX1241 | upstream | -71 | -71 | Sec-independent protein translocase protein TatA | 2.207 | 1161.4 | unknown | |
ucsc_link | NC_006677_621H_old | 1042894 | 1043380 | 1043099 | + | GOX0951 | GOX0951 | gene | -2697 | -2697 | hypothetical protein | similar to nodulation factor NolG | 2.037 | 1087.7 | unknown |
ucsc_link | NC_006677_621H_old | 1372793 | 1373181 | 1372984 | - | GOX1258 | GOX1258 | upstream | -41 | -41 | hypothetical protein | 2.122 | 1741.3 | unknown | |
ucsc_link | NC_006673_pGOX2 | 8105 | 8505 | 8307 | + | fake | fake | intergenic | nan | nan | None | None | 2.080 | 982.1 | unknown |
ucsc_link | NC_006677_621H_old | 1084027 | 1084391 | 1084206 | - | GOX0987 | pqqA | upstream | 43 | 43 | coenzyme PQQ synthesis protein PqqA | Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme | 2.122 | 2225.9 | unknown |
ucsc_link | NC_006677_621H_old | 1599268 | 1599794 | 1599558 | - | GOX1461 | GOX1461 | upstream | 49 | 49 | dipeptidyl peptidase IV | 2.292 | 1701.4 | unknown | |
ucsc_link | NC_006677_621H_old | 752872 | 753328 | 753104 | - | GOX0693 | GOX0693 | gene | -1780 | -1780 | hypothetical protein | 2.377 | 8578.0 | unknown | |
ucsc_link | NC_006677_621H_old | 768522 | 768886 | 768684 | + | GOX0707 | GOX0707 | upstream | -24 | -24 | DNA starvation/stationary phase protection protein Dps | binds DNA in a non-sequence-specific manner and is abundant during stationary phase forms a DNA-protein crystal that protects DNA from damage required for normal starvation response and long-term stationary viability forms a homododecameric complex and sequesters iron which provides protection against oxidative damage | 1.867 | 1286.9 | unknown |
ucsc_link | NC_006677_621H_old | 1071120 | 1071525 | 1071332 | - | GOX0972 | GOX0972 | upstream | -111 | -111 | cation efflux system protein CzcB | 1.952 | 1122.9 | unknown | |
ucsc_link | NC_006677_621H_old | 2049734 | 2050110 | 2049919 | - | GOX1870 | GOX1870 | upstream | -24 | -24 | hypothetical protein | 1.952 | 642.2 | unknown |