diff --git a/README.md b/README.md index 637b19497f8c13da5f72c2760a1df5513788927b..de855c8b2a1b6e71f6c31dc0eef2ac9e795a709e 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,42 @@ # Drought stress effects on gene expression and metabolite profiles in blackcurrant (*Ribes nigrum* L.) +This ARC represents the data described in the following publication: + Ziegler et al. 2024 Hort Res. https://doi.org/10.1093/hr/uhae313 + + +## Abstract + The blackcurrant (*Ribes nigrum* L., family Grossulariaceae) is a perennial shrub valued for its antioxidant-rich berries, widely used in the food and beverage industry. However, prolonged drought during the fruiting season leads to drought stress, inhibiting growth and reducing yields. To explore the underlying molecular mechanisms, we present the first high-quality chromosome-scale genome assembly for blackcurrant (cv. Rosenthals Langtraubige), the first in the Grossulariaceae family. Using this genomic reference, we analyzed the transcriptomic response of blackcurrant leaves and roots to drought stress, identifying key differentially expressed genes and significant changes in primary metabolites, such as increased proline and depleted organic acids under stress. This data can aid in developing drought-resistant blackcurrant cultivars. - +## Table of contents -[Supplemental Material](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/studies/Supplemental_Tables.xlsx?ref_type=heads) +### Studies + +[_Ribes nigrum_ genome](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_genome?ref_type=heads) + +[Drought stress experiment 1](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_drought_exp1?ref_type=heads) + +[Drought stress experiment](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_drought_exp2?ref_type=heads) + +### Assays -[Assemblies](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_genome?ref_type=heads) +[Genome Sequencing](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/Ribes_nigrum_genome_sequencing?ref_type=heads) + +[RNASeq (Drought)](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/RNASeq_drought/dataset?ref_type=heads) + +[Metabolite measurement](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/Metabolite_measurement?ref_type=heads) + +### Runs + +Results of the genome sequencing and transcriptome analysis + +[Ribes nigrum genome annotation](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_genome?ref_type=heads) + +[Ribes nigrum transcriptom](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_transcriptome?ref_type=heads) + +### Supplemental Material + +[Supplemental Material](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/studies/Supplemental_Tables.xlsx?ref_type=heads)