From 671de5cad4e4cfc37ebdcb86c3b46993882d37b8 Mon Sep 17 00:00:00 2001 From: Angela Kranz <a.kranz@fz-juelich.de> Date: Sat, 16 Nov 2024 07:33:57 +0000 Subject: [PATCH] Update README.md --- README.md | 36 +++++++++++++++++++++++++++++++++--- 1 file changed, 33 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 637b194..de855c8 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,42 @@ # Drought stress effects on gene expression and metabolite profiles in blackcurrant (*Ribes nigrum* L.) +This ARC represents the data described in the following publication: + Ziegler et al. 2024 Hort Res. https://doi.org/10.1093/hr/uhae313 + + +## Abstract + The blackcurrant (*Ribes nigrum* L., family Grossulariaceae) is a perennial shrub valued for its antioxidant-rich berries, widely used in the food and beverage industry. However, prolonged drought during the fruiting season leads to drought stress, inhibiting growth and reducing yields. To explore the underlying molecular mechanisms, we present the first high-quality chromosome-scale genome assembly for blackcurrant (cv. Rosenthals Langtraubige), the first in the Grossulariaceae family. Using this genomic reference, we analyzed the transcriptomic response of blackcurrant leaves and roots to drought stress, identifying key differentially expressed genes and significant changes in primary metabolites, such as increased proline and depleted organic acids under stress. This data can aid in developing drought-resistant blackcurrant cultivars. - +## Table of contents -[Supplemental Material](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/studies/Supplemental_Tables.xlsx?ref_type=heads) +### Studies + +[_Ribes nigrum_ genome](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_genome?ref_type=heads) + +[Drought stress experiment 1](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_drought_exp1?ref_type=heads) + +[Drought stress experiment](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/studies/Ribes_nigrum_drought_exp2?ref_type=heads) + +### Assays -[Assemblies](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_genome?ref_type=heads) +[Genome Sequencing](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/Ribes_nigrum_genome_sequencing?ref_type=heads) + +[RNASeq (Drought)](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/RNASeq_drought/dataset?ref_type=heads) + +[Metabolite measurement](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/assays/Metabolite_measurement?ref_type=heads) + +### Runs + +Results of the genome sequencing and transcriptome analysis + +[Ribes nigrum genome annotation](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_genome?ref_type=heads) + +[Ribes nigrum transcriptom](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/tree/main/runs/Ribes_nigrum_transcriptome?ref_type=heads) + +### Supplemental Material + +[Supplemental Material](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/studies/Supplemental_Tables.xlsx?ref_type=heads) -- GitLab