From ab62986002982b32b38e210d1a7bb2d3a8584107 Mon Sep 17 00:00:00 2001 From: Angela Kranz <a.kranz@fz-juelich.de> Date: Sun, 17 Nov 2024 19:05:45 +0000 Subject: [PATCH] Update README.md --- assays/Ribes_nigrum_genome_sequencing/README.md | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/assays/Ribes_nigrum_genome_sequencing/README.md b/assays/Ribes_nigrum_genome_sequencing/README.md index 23870eb..63405c1 100644 --- a/assays/Ribes_nigrum_genome_sequencing/README.md +++ b/assays/Ribes_nigrum_genome_sequencing/README.md @@ -8,6 +8,15 @@ Briefly, DNA was extracted, short fragments filtered out, DNA purity confirmed,  +## Assay Metadata + +| Input [Source Name] | Protocol REF | Protocol Description | Component [next generation sequencing instrument model] | Characteristic [Sequencing Library Source Indicator] | Parameter [Library selection] | Parameter [library strategy] | Parameter [library layout] | Output [Data] +| ------ | ------ | ------ | ------ |------ | ------ | ------ |------ | ------ +| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | Oxford Nanopore PromethION | Genomic DNA | size fractionation | Whole Genome Sequencing | single-end | Ribes_nigrum_DNA_raw_ONT +| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | PacBio RS | Genomic DNA | size fractionation | Whole Genome Sequencing | single-end | Ribes_nigrum_DNA_raw_PacBio +| R. nigrum cv Rosenthals Langtraubige_Leaves | DNA_library_prep | [Protocol](https://git.nfdi4plants.org/usadellab/ribes_nigrum_genome/-/blob/main/assays/Ribes_nigrum_genome_sequencing/protocols/DNA%20library%20construction%20and%20sequencing.docx?ref_type=heads) | Illumina NovaSeq 6000 | Genomic DNA | size fractionation | Whole Genome Sequencing | paired-end | Ribes_nigrum_DNA_raw_Illumina + + ## Related repositories and files This assay folder contains all information for the DNA isolation, library preparation and sequencing. -- GitLab