Usadellab
Ribes_nigrum_genome

Repository

---
title: Ribes_nigrum_genome
---
flowchart TD
    classDef investigationStyle fill:#6c7885,color:#2d3e50,fontWeight:bold;
    classDef studyStyle fill:#62d4c1,color:#2d3e50,fontWeight:bold;
    classDef assayStyle fill:#ffd34d,color:#2d3e50,fontWeight:bold;
    classDef processStyle fill:#D46275,color:#2d3e50;
    id_0["A full genome assembly reveals drought stress effects on gene expression and metabolite profiles in blackcurrant (Ribes nigrum L.)"]
    class id_0 investigationStyle;
    id_0-->STUDY_id_1
    class STUDY_id_1 studyStyle;
    subgraph STUDY_id_1[Study: Ribes nigrum Drought Experiment 1]
        id_2[Plant growth]
        class id_2 processStyle;
    end
    id_0-->STUDY_id_3
    class STUDY_id_3 studyStyle;
    subgraph STUDY_id_3[Study: Ribes nigrum Drought Experiment 2]
        id_4[plant_growth]
        class id_4 processStyle;
    end
    id_0-->STUDY_id_0
    class STUDY_id_0 studyStyle;
    subgraph STUDY_id_0[Study: Ribes nigrum Genome]
        id_2[Plant growth]
        class id_2 processStyle;
    end
    subgraph ASSAY_id_5[Assay: RNASeq_drought]
        id_6[RNASeq]
        class id_6 processStyle;
    end
    class ASSAY_id_5 assayStyle;
    subgraph ASSAY_id_7[Assay: Ribes_nigrum_genome_sequencing]
        id_8[DNA_library_and_sequencing]
        class id_8 processStyle;
    end
    class ASSAY_id_7 assayStyle;
    subgraph ASSAY_id_9[Assay: Metabolite_measurement]
        id_10[metabolite_analysis]
        class id_10 processStyle;
    end
    class ASSAY_id_9 assayStyle;
    subgraph ASSAY_id_11[Assay: qRT-PCR]
        id_12[qRTPCR]
        class id_12 processStyle;
    end
    class ASSAY_id_11 assayStyle;
    id_2-->|12|id_6
    id_2-->|12|id_10
    id_2-->|12|id_12
    id_4-->|6|id_6
    id_4-->|6|id_10
    id_4-->|6|id_12
    id_13-->|1|id_8