From 1afe6c3c44cf4bc02287a0adbb1f255e4ede1f96 Mon Sep 17 00:00:00 2001
From: Benedikt Venn <venn@bio.uni-kl.de>
Date: Fri, 15 Jul 2022 10:56:48 +0200
Subject: [PATCH] move publication to root

---
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 README.md                                     |   2 +-
 assays/Blotting/isa.assay.xlsx                | Bin 21550 -> 21521 bytes
 {runs/publication => publication}/erab390.pdf |   0
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 ...erab390_suppl_supplementary_dataset_s2.zip | Bin
 ...erab390_suppl_supplementary_dataset_s3.zip | Bin
 ...l_supplementary_table_s1_figures_s1-s5.pdf | Bin
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 rename {runs/publication => publication}/erab390.pdf (100%)
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 rename {runs/publication => publication}/erab390_fig6.jpg (100%)
 rename {runs/publication => publication}/erab390_fig7.jpg (100%)
 rename {runs/publication => publication}/erab390_suppl_supplementary_dataset_s2.zip (100%)
 rename {runs/publication => publication}/erab390_suppl_supplementary_dataset_s3.zip (100%)
 rename {runs/publication => publication}/erab390_suppl_supplementary_table_s1_figures_s1-s5.pdf (100%)

diff --git a/.gitattributes b/.gitattributes
index dabe321..2635f9c 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,226 +1 @@
 **/dataset/** filter=lfs diff=lfs merge=lfs -text
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-/assays/GelBasedProteomics/dataset/processed/20180420[[:space:]]MS[[:space:]]JBbnAida001[[:space:]]all[[:space:]]together/msms.txt filter=lfs diff=lfs merge=lfs -text
-/assays/GelBasedProteomics/dataset/processed/20180420[[:space:]]MS[[:space:]]JBbnAida001[[:space:]]all[[:space:]]together/msmsScans.txt filter=lfs diff=lfs merge=lfs -text
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diff --git a/README.md b/README.md
index aac6ff2..bca00f0 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,7 @@
 Wild type and lpa2 mutant Chlamydomonas reinhardtii were grown mixotrophically at 30 uE light intensity. Proteins were extracted and BN-PAGE lanes of three biological replicates each were cut into 36 slices and subsequently analysed in a mass spectrometer.
 
 
-<img src="https://git.nfdi4plants.org/venn/LPA2_ComplexomeProfiling_Chlamy/-/raw/main/assays/GelBasedProteomics/dataset/GelPicture.png" alt="GelPicture" width="60%"/>
+<img src="https://git.nfdi4plants.org/venn/LPA2_ComplexomeProfiling_Chlamy/-/raw/main/assays/GelBasedProteomics/dataset/raw/GelPicture.png" alt="GelPicture" width="60%"/>
 
 _Figure 1: Blue native PAGE of three wild type and three lpa2 mutant samples._
 
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