diff --git a/.gitattributes b/.gitattributes index 4a5e640b4176f6e78b2a8bdde57c7a7adcc09762..2635f9cbbd98377405c62ee003f1d6b4b772e7b2 100644 --- a/.gitattributes +++ b/.gitattributes @@ -1,19 +1 @@ **/dataset/** filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481389/SRR15481389_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481389/SRR15481389_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481390/SRR15481390_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481390/SRR15481390_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481391/SRR15481391_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_02h/SRR15481391/SRR15481391_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481392/SRR15481392_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481392/SRR15481392_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481393/SRR15481393_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481393/SRR15481393_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481394/SRR15481394_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_04h/SRR15481394/SRR15481394_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481395/SRR15481395_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481395/SRR15481395_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481396/SRR15481396_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481396/SRR15481396_2.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481397/SRR15481397_1.fastq.gz filter=lfs diff=lfs merge=lfs -text -/assays/Transcriptomics/dataset/fastq/40C/recovery_08h/SRR15481397/SRR15481397_2.fastq.gz filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md index f44273c9bb35c1e0fd425fdfc8ff8b366c6602f4..22c673aff8f9af0be1fb586b0fd8eae465918325 100644 --- a/README.md +++ b/README.md @@ -15,22 +15,22 @@ Journal: Commun Biol. 2022 May 13;5(1):460. doi: 10.1038/s42003-022-03359-z. PMI ## Sampling schema -|time point [h]|condition |temperature [°C]|sample name|description| -|---|--|--|--|--| -|-20|control|25|pre1|| -|-18|control|25|pre2|| -|0|start heat treatment|25 -> 35/40|HS_T00h|reach treatment temperature| -|0.5|heat treatment|35/40|HS_T00.5h|-| -|1|heat treatment|35/40|HS_T01h|-| -|2|heat treatment|35/40|HS_T02h|-| -|4|heat treatment|35/40|HS_T04h|-| -|8|heat treatment|35/40|HS_T08h|-| -|16|heat treatment|35/40|HS_T16h|-| -|24|end treatment|35/40 -> 25|HS_T24h|end heat treatment| -|24|start recovery|25|RE_T00h|RCT (reach control temperature)| -|26|recovery|25|RE_T02h|-| -|28|recovery|25|RE_T04h|-| -|32|recovery|25|RE_T08h|-| -|48|recovery|25|RE_T24h|-| -|72|recovery|25|RE_T48h|-| +|time point [h]|condition |temperature [°C]|sample name|description|sample taken Proteomics =16|sample taken Transcriptomics =15| +|---|--|--|--|--|--|--| +|-20|control|25|pre1||x|| +|-18|control|25|pre2|preheat|x|x| +|0|start heat treatment|25 -> 35/40|HS_T00h|RHT (reach high temperature)|x|x| +|0.5|heat treatment|35/40|HS_T00.5h|-|x|x| +|1|heat treatment|35/40|HS_T01h|-|x|x| +|2|heat treatment|35/40|HS_T02h|-|x|x| +|4|heat treatment|35/40|HS_T04h|-|x|x| +|8|heat treatment|35/40|HS_T08h|-|x|x| +|16|heat treatment|35/40|HS_T16h|-|x|x| +|24|end treatment|35/40 -> 25|HS_T24h|end heat treatment|x|x| +|24|start recovery|25|RE_T00h|RCT (reach control temperature)|x|x| +|26|recovery|25|RE_T02h|-|x|x| +|28|recovery|25|RE_T04h|-|x|x| +|32|recovery|25|RE_T08h|-|x|x| +|48|recovery|25|RE_T24h|-|x|x| +|72|recovery|25|RE_T48h|-|x|x|