From b0284c2385f3f1aae8a4464b7c4f88d8fb47e415 Mon Sep 17 00:00:00 2001
From: Jonathan Bauer <bauer@cs.uni-freiburg.de>
Date: Tue, 19 Nov 2024 13:38:58 +0000
Subject: [PATCH] Results for commit: a75a9c8cbc2103b9af886ba1ec587e99f61e7ba7
---
main/arc_specification@2.0.0-draft/badge.svg | 12 ++++++------
.../validation_report.xml | 2 +-
.../validation_summary.json | 2 +-
main/invenio@2.1.0/validation_report.xml | 2 +-
main/pride@1.0.3/badge.svg | 12 ++++++------
main/pride@1.0.3/validation_report.xml | 2 +-
main/pride@1.0.3/validation_summary.json | 2 +-
7 files changed, 17 insertions(+), 17 deletions(-)
diff --git a/main/arc_specification@2.0.0-draft/badge.svg b/main/arc_specification@2.0.0-draft/badge.svg
index 46b58da..a0004ba 100644
--- a/main/arc_specification@2.0.0-draft/badge.svg
+++ b/main/arc_specification@2.0.0-draft/badge.svg
@@ -1,23 +1,23 @@
<?xml version="1.0" encoding="UTF-8"?>
-<svg xmlns="http://www.w3.org/2000/svg" width="300" height="20">
+<svg xmlns="http://www.w3.org/2000/svg" width="235" height="20">
<linearGradient id="b" x2="0" y2="100%">
<stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
<stop offset="1" stop-opacity=".1"/>
</linearGradient>
<mask id="1">
- <rect width="300" height="20" rx="3" fill="#fff"/>
+ <rect width="235" height="20" rx="3" fill="#fff"/>
</mask>
<g mask="url(#1)">
<path fill="#555" d="M0 0h192v20H0z"/>
- <path fill="#E05D44" d="M192 0h108v20H192z"/>
- <path fill="url(#b)" d="M0 0h300v20H0z"/>
+ <path fill="#4C1" d="M192 0h43v20H192z"/>
+ <path fill="url(#b)" d="M0 0h235v20H0z"/>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
<text x="97" y="15" fill="#010101" fill-opacity=".3">arc_specification@2.0.0-draft</text>
<text x="96" y="14">arc_specification@2.0.0-draft</text>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
- <text x="247" y="15" fill="#010101" fill-opacity=".3">1 Critical Errors</text>
- <text x="246" y="14">1 Critical Errors</text>
+ <text x="214.5" y="15" fill="#010101" fill-opacity=".3">17/17</text>
+ <text x="213.5" y="14">17/17</text>
</g>
</svg>
diff --git a/main/arc_specification@2.0.0-draft/validation_report.xml b/main/arc_specification@2.0.0-draft/validation_report.xml
index 23710fe..bb08033 100644
--- a/main/arc_specification@2.0.0-draft/validation_report.xml
+++ b/main/arc_specification@2.0.0-draft/validation_report.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="arc-validate"><testcase name="[ Critical; Arc contains all files linked in investigation ]" time="0.036"><failure message="The value 'studies/HeatstressExperiment/isa.study.xlsx' does not exist" /></testcase><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in assays ]" time="0.411" /><testcase name="[ Critical; Arc contains assay in assay directory ]" time="0.091" /><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in studies ]" time="0.087" /><testcase name="[ Critical; Arc contains study in studies directory ]" time="0.086" /><testcase name="[ Critical; Arc contains all files linked in studies ]" time="0.030" /><testcase name="[ Critical; Arc contains workflow in workflow directory ]" time="0.027" /><testcase name="[ Critical; Arc contains investigation file ]" time="0.017" /><testcase name="[ Critical; Arc contains Investigation optional Metadata fields ]" time="0.009" /><testcase name="[ Critical; Arc contains Study optional Metadata fields ]" time="0.005" /><testcase name="[ Critical; Arc contains Studies Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Assays Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Runs Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Workflows Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains all needed Investigation Metadata fields ]" time="0.003" /><testcase name="[ Critical; Arc contains all needed Study Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains all needed Assay Metadata fields ]" time="0.002" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="arc-validate"><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in assays ]" time="0.384" /><testcase name="[ Critical; Arc contains assay in assay directory ]" time="0.089" /><testcase name="[ Critical; Arc contains study in studies directory ]" time="0.087" /><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in studies ]" time="0.074" /><testcase name="[ Critical; Arc contains all files linked in studies ]" time="0.034" /><testcase name="[ Critical; Arc contains workflow in workflow directory ]" time="0.030" /><testcase name="[ Critical; Arc contains investigation file ]" time="0.019" /><testcase name="[ Critical; Arc contains Investigation optional Metadata fields ]" time="0.009" /><testcase name="[ Critical; Arc contains all needed Study Metadata fields ]" time="0.008" /><testcase name="[ Critical; Arc contains all needed Assay Metadata fields ]" time="0.006" /><testcase name="[ Critical; Arc contains Studies Directory ]" time="0.004" /><testcase name="[ Critical; Arc contains Assays Directory ]" time="0.004" /><testcase name="[ Critical; Arc contains Runs Directory ]" time="0.004" /><testcase name="[ Critical; Arc contains Workflows Directory ]" time="0.004" /><testcase name="[ Critical; Arc contains all needed Investigation Metadata fields ]" time="0.003" /><testcase name="[ Critical; Arc contains Study optional Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains all files linked in investigation ]" time="0.001" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/arc_specification@2.0.0-draft/validation_summary.json b/main/arc_specification@2.0.0-draft/validation_summary.json
index b0a4969..2e4d530 100644
--- a/main/arc_specification@2.0.0-draft/validation_summary.json
+++ b/main/arc_specification@2.0.0-draft/validation_summary.json
@@ -1 +1 @@
-{"Critical":{"HasFailures":true,"Total":17,"Passed":16,"Failed":1,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"arc_specification","Version":"2.0.0-draft","Summary":"Validate whether an ARC conforms to Specification V2.0.0-draft","Description":"Validate whether an ARC conforms to Specification V2.0.0-draft. See the relevant spec at https://github.com/nfdi4plants/ARC-specification/blob/v2.0.0/ARC%20specification.md"}}
\ No newline at end of file
+{"Critical":{"HasFailures":false,"Total":17,"Passed":17,"Failed":0,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"arc_specification","Version":"2.0.0-draft","Summary":"Validate whether an ARC conforms to Specification V2.0.0-draft","Description":"Validate whether an ARC conforms to Specification V2.0.0-draft. See the relevant spec at https://github.com/nfdi4plants/ARC-specification/blob/v2.0.0/ARC%20specification.md"}}
\ No newline at end of file
diff --git a/main/invenio@2.1.0/validation_report.xml b/main/invenio@2.1.0/validation_report.xml
index 688691a..299ae7b 100644
--- a/main/invenio@2.1.0/validation_report.xml
+++ b/main/invenio@2.1.0/validation_report.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/pride@1.0.3/badge.svg b/main/pride@1.0.3/badge.svg
index 6957a6f..2de0635 100644
--- a/main/pride@1.0.3/badge.svg
+++ b/main/pride@1.0.3/badge.svg
@@ -1,23 +1,23 @@
<?xml version="1.0" encoding="UTF-8"?>
-<svg xmlns="http://www.w3.org/2000/svg" width="190" height="20">
+<svg xmlns="http://www.w3.org/2000/svg" width="125" height="20">
<linearGradient id="b" x2="0" y2="100%">
<stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
<stop offset="1" stop-opacity=".1"/>
</linearGradient>
<mask id="1">
- <rect width="190" height="20" rx="3" fill="#fff"/>
+ <rect width="125" height="20" rx="3" fill="#fff"/>
</mask>
<g mask="url(#1)">
<path fill="#555" d="M0 0h82v20H0z"/>
- <path fill="#E05D44" d="M82 0h108v20H82z"/>
- <path fill="url(#b)" d="M0 0h190v20H0z"/>
+ <path fill="#4C1" d="M82 0h43v20H82z"/>
+ <path fill="url(#b)" d="M0 0h125v20H0z"/>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
<text x="42" y="15" fill="#010101" fill-opacity=".3">pride@1.0.3</text>
<text x="41" y="14">pride@1.0.3</text>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
- <text x="137" y="15" fill="#010101" fill-opacity=".3">2 Critical Errors</text>
- <text x="136" y="14">2 Critical Errors</text>
+ <text x="104.5" y="15" fill="#010101" fill-opacity=".3">22/22</text>
+ <text x="103.5" y="14">22/22</text>
</g>
</svg>
diff --git a/main/pride@1.0.3/validation_report.xml b/main/pride@1.0.3/validation_report.xml
index fa70309..fecff76 100644
--- a/main/pride@1.0.3/validation_report.xml
+++ b/main/pride@1.0.3/validation_report.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; STUDY; Tissue ]" time="0.004"><failure message="The value 'paramCollection' The does not satisfy the predicate." /></testcase><testcase name="[ Critical; STUDY; Organism ]" time="0.004"><failure message="The value 'paramCollection' The does not satisfy the predicate." /></testcase><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.001" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS description ]" time="0.000" /><testcase name="[ Critical; STUDY; Tissue terms ]" time="0.000" /><testcase name="[ Critical; STUDY; Organism terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Accession Number ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Source REF ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; modification ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.001" /><testcase name="[ Critical; STUDY; Tissue ]" time="0.001" /><testcase name="[ Critical; STUDY; Organism ]" time="0.001" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS description ]" time="0.000" /><testcase name="[ Critical; STUDY; Tissue terms ]" time="0.000" /><testcase name="[ Critical; STUDY; Organism terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Accession Number ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Source REF ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; modification ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/pride@1.0.3/validation_summary.json b/main/pride@1.0.3/validation_summary.json
index 63ec273..14aa4e4 100644
--- a/main/pride@1.0.3/validation_summary.json
+++ b/main/pride@1.0.3/validation_summary.json
@@ -1 +1 @@
-{"Critical":{"HasFailures":true,"Total":22,"Passed":20,"Failed":2,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"pride","Version":"1.0.3","Summary":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.","Description":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.\nThe following metadata is required:\n - Investigation has title and description\n - Investigation has Keywords comment in correct format\n - All persons in Investigation Contacts must have a first name, last name, affiliation and valid email\n - Study has protocol, tissue \u0026 species in correct format\n - Assay has technology type, instrument model, and fixed and/or variable modification in correct format\n"}}
\ No newline at end of file
+{"Critical":{"HasFailures":false,"Total":22,"Passed":22,"Failed":0,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"pride","Version":"1.0.3","Summary":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.","Description":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.\nThe following metadata is required:\n - Investigation has title and description\n - Investigation has Keywords comment in correct format\n - All persons in Investigation Contacts must have a first name, last name, affiliation and valid email\n - Study has protocol, tissue \u0026 species in correct format\n - Assay has technology type, instrument model, and fixed and/or variable modification in correct format\n"}}
\ No newline at end of file
--
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