From d03a16f83872db52531fc74b5d72ad997d9cfdb9 Mon Sep 17 00:00:00 2001
From: Jonathan Bauer <bauer@cs.uni-freiburg.de>
Date: Tue, 19 Nov 2024 13:13:42 +0000
Subject: [PATCH] Results for commit: d461ee826d8e8e67824b0cac2e115a694d0d9d11
---
main/arc_specification@2.0.0-draft/badge.svg | 23 +++++++++++++++++++
.../validation_report.xml | 1 +
.../validation_summary.json | 1 +
main/invenio@2.1.0/badge.svg | 23 +++++++++++++++++++
main/invenio@2.1.0/validation_report.xml | 1 +
main/invenio@2.1.0/validation_summary.json | 1 +
main/pride@1.0.3/badge.svg | 23 +++++++++++++++++++
main/pride@1.0.3/validation_report.xml | 1 +
main/pride@1.0.3/validation_summary.json | 1 +
9 files changed, 75 insertions(+)
create mode 100644 main/arc_specification@2.0.0-draft/badge.svg
create mode 100644 main/arc_specification@2.0.0-draft/validation_report.xml
create mode 100644 main/arc_specification@2.0.0-draft/validation_summary.json
create mode 100644 main/invenio@2.1.0/badge.svg
create mode 100644 main/invenio@2.1.0/validation_report.xml
create mode 100644 main/invenio@2.1.0/validation_summary.json
create mode 100644 main/pride@1.0.3/badge.svg
create mode 100644 main/pride@1.0.3/validation_report.xml
create mode 100644 main/pride@1.0.3/validation_summary.json
diff --git a/main/arc_specification@2.0.0-draft/badge.svg b/main/arc_specification@2.0.0-draft/badge.svg
new file mode 100644
index 0000000..46b58da
--- /dev/null
+++ b/main/arc_specification@2.0.0-draft/badge.svg
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<svg xmlns="http://www.w3.org/2000/svg" width="300" height="20">
+ <linearGradient id="b" x2="0" y2="100%">
+ <stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
+ <stop offset="1" stop-opacity=".1"/>
+ </linearGradient>
+ <mask id="1">
+ <rect width="300" height="20" rx="3" fill="#fff"/>
+ </mask>
+ <g mask="url(#1)">
+ <path fill="#555" d="M0 0h192v20H0z"/>
+ <path fill="#E05D44" d="M192 0h108v20H192z"/>
+ <path fill="url(#b)" d="M0 0h300v20H0z"/>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="97" y="15" fill="#010101" fill-opacity=".3">arc_specification@2.0.0-draft</text>
+ <text x="96" y="14">arc_specification@2.0.0-draft</text>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="247" y="15" fill="#010101" fill-opacity=".3">1 Critical Errors</text>
+ <text x="246" y="14">1 Critical Errors</text>
+ </g>
+</svg>
diff --git a/main/arc_specification@2.0.0-draft/validation_report.xml b/main/arc_specification@2.0.0-draft/validation_report.xml
new file mode 100644
index 0000000..23710fe
--- /dev/null
+++ b/main/arc_specification@2.0.0-draft/validation_report.xml
@@ -0,0 +1 @@
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="arc-validate"><testcase name="[ Critical; Arc contains all files linked in investigation ]" time="0.036"><failure message="The value 'studies/HeatstressExperiment/isa.study.xlsx' does not exist" /></testcase><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in assays ]" time="0.411" /><testcase name="[ Critical; Arc contains assay in assay directory ]" time="0.091" /><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in studies ]" time="0.087" /><testcase name="[ Critical; Arc contains study in studies directory ]" time="0.086" /><testcase name="[ Critical; Arc contains all files linked in studies ]" time="0.030" /><testcase name="[ Critical; Arc contains workflow in workflow directory ]" time="0.027" /><testcase name="[ Critical; Arc contains investigation file ]" time="0.017" /><testcase name="[ Critical; Arc contains Investigation optional Metadata fields ]" time="0.009" /><testcase name="[ Critical; Arc contains Study optional Metadata fields ]" time="0.005" /><testcase name="[ Critical; Arc contains Studies Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Assays Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Runs Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains Workflows Directory ]" time="0.003" /><testcase name="[ Critical; Arc contains all needed Investigation Metadata fields ]" time="0.003" /><testcase name="[ Critical; Arc contains all needed Study Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains all needed Assay Metadata fields ]" time="0.002" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/arc_specification@2.0.0-draft/validation_summary.json b/main/arc_specification@2.0.0-draft/validation_summary.json
new file mode 100644
index 0000000..b0a4969
--- /dev/null
+++ b/main/arc_specification@2.0.0-draft/validation_summary.json
@@ -0,0 +1 @@
+{"Critical":{"HasFailures":true,"Total":17,"Passed":16,"Failed":1,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"arc_specification","Version":"2.0.0-draft","Summary":"Validate whether an ARC conforms to Specification V2.0.0-draft","Description":"Validate whether an ARC conforms to Specification V2.0.0-draft. See the relevant spec at https://github.com/nfdi4plants/ARC-specification/blob/v2.0.0/ARC%20specification.md"}}
\ No newline at end of file
diff --git a/main/invenio@2.1.0/badge.svg b/main/invenio@2.1.0/badge.svg
new file mode 100644
index 0000000..28088d3
--- /dev/null
+++ b/main/invenio@2.1.0/badge.svg
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<svg xmlns="http://www.w3.org/2000/svg" width="137" height="20">
+ <linearGradient id="b" x2="0" y2="100%">
+ <stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
+ <stop offset="1" stop-opacity=".1"/>
+ </linearGradient>
+ <mask id="1">
+ <rect width="137" height="20" rx="3" fill="#fff"/>
+ </mask>
+ <g mask="url(#1)">
+ <path fill="#555" d="M0 0h94v20H0z"/>
+ <path fill="#4C1" d="M94 0h43v20H94z"/>
+ <path fill="url(#b)" d="M0 0h137v20H0z"/>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="48" y="15" fill="#010101" fill-opacity=".3">invenio@2.1.0</text>
+ <text x="47" y="14">invenio@2.1.0</text>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="116.5" y="15" fill="#010101" fill-opacity=".3">10/10</text>
+ <text x="115.5" y="14">10/10</text>
+ </g>
+</svg>
diff --git a/main/invenio@2.1.0/validation_report.xml b/main/invenio@2.1.0/validation_report.xml
new file mode 100644
index 0000000..688691a
--- /dev/null
+++ b/main/invenio@2.1.0/validation_report.xml
@@ -0,0 +1 @@
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/invenio@2.1.0/validation_summary.json b/main/invenio@2.1.0/validation_summary.json
new file mode 100644
index 0000000..9f69546
--- /dev/null
+++ b/main/invenio@2.1.0/validation_summary.json
@@ -0,0 +1 @@
+{"Critical":{"HasFailures":false,"Total":10,"Passed":10,"Failed":0,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"invenio","Version":"2.1.0","Summary":"Validates if the ARC contains the necessary metadata to be publishable via Invenio.","Description":"Validates if the ARC contains the necessary metadata to be publishable via Invenio.\nThe following metadata is required:\n- Investigation has title and description\n- All persons in Investigation Contacts must have a name, last name, affiliation and valid email\n"}}
\ No newline at end of file
diff --git a/main/pride@1.0.3/badge.svg b/main/pride@1.0.3/badge.svg
new file mode 100644
index 0000000..6957a6f
--- /dev/null
+++ b/main/pride@1.0.3/badge.svg
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<svg xmlns="http://www.w3.org/2000/svg" width="190" height="20">
+ <linearGradient id="b" x2="0" y2="100%">
+ <stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
+ <stop offset="1" stop-opacity=".1"/>
+ </linearGradient>
+ <mask id="1">
+ <rect width="190" height="20" rx="3" fill="#fff"/>
+ </mask>
+ <g mask="url(#1)">
+ <path fill="#555" d="M0 0h82v20H0z"/>
+ <path fill="#E05D44" d="M82 0h108v20H82z"/>
+ <path fill="url(#b)" d="M0 0h190v20H0z"/>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="42" y="15" fill="#010101" fill-opacity=".3">pride@1.0.3</text>
+ <text x="41" y="14">pride@1.0.3</text>
+ </g>
+ <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
+ <text x="137" y="15" fill="#010101" fill-opacity=".3">2 Critical Errors</text>
+ <text x="136" y="14">2 Critical Errors</text>
+ </g>
+</svg>
diff --git a/main/pride@1.0.3/validation_report.xml b/main/pride@1.0.3/validation_report.xml
new file mode 100644
index 0000000..fa70309
--- /dev/null
+++ b/main/pride@1.0.3/validation_report.xml
@@ -0,0 +1 @@
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; STUDY; Tissue ]" time="0.004"><failure message="The value 'paramCollection' The does not satisfy the predicate." /></testcase><testcase name="[ Critical; STUDY; Organism ]" time="0.004"><failure message="The value 'paramCollection' The does not satisfy the predicate." /></testcase><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.001" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS ]" time="0.000" /><testcase name="[ Critical; STUDY; STUDY PROTOCOLS description ]" time="0.000" /><testcase name="[ Critical; STUDY; Tissue terms ]" time="0.000" /><testcase name="[ Critical; STUDY; Organism terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Accession Number ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type ]" time="0.000" /><testcase name="[ Critical; ASSAY; Assay Technology Type Term Source REF ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model ]" time="0.000" /><testcase name="[ Critical; ASSAY; instrument model terms ]" time="0.000" /><testcase name="[ Critical; ASSAY; modification ]" time="0.000" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/main/pride@1.0.3/validation_summary.json b/main/pride@1.0.3/validation_summary.json
new file mode 100644
index 0000000..63ec273
--- /dev/null
+++ b/main/pride@1.0.3/validation_summary.json
@@ -0,0 +1 @@
+{"Critical":{"HasFailures":true,"Total":22,"Passed":20,"Failed":2,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"pride","Version":"1.0.3","Summary":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.","Description":"Validates if the ARC contains the necessary metadata to be publishable via PRIDE.\nThe following metadata is required:\n - Investigation has title and description\n - Investigation has Keywords comment in correct format\n - All persons in Investigation Contacts must have a first name, last name, affiliation and valid email\n - Study has protocol, tissue \u0026 species in correct format\n - Assay has technology type, instrument model, and fixed and/or variable modification in correct format\n"}}
\ No newline at end of file
--
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