diff --git a/workflows/EvalTurboID/TurboIDSampleArc.cwl b/workflows/EvalTurboID/TurboIDSampleArc.cwl index cc02497e7a1b84dfa1d744b99689cf745e86bc1c..6585f1f56fb9a1d636c80ebbb9f2a9fe28db1c52 100644 --- a/workflows/EvalTurboID/TurboIDSampleArc.cwl +++ b/workflows/EvalTurboID/TurboIDSampleArc.cwl @@ -47,6 +47,7 @@ outputs: outputBinding: glob: $(runtime.outdir)/$(inputs.runID) + arc:performer: - class: arc:Person arc:first name: "David" @@ -58,7 +59,47 @@ arc:performer: arc:term accession: "https://credit.niso.org/contributor-roles/formal-analysis/" arc:annotation value: "Formal analysis" - +arc:has process sequence: + - class: arc:process sequence + arc:name: "MassSpectrometry" + arc:has input: + - class: arc:sample + arc:name: "PR135_01" + - class: arc:sample + arc:name: "PR135_02" + arc:has output: + - class: arc:data + arc:name: "20220531TRR3R135001" + - class: arc:data + arc:name: "20220531TRR3R135003" + arc:has parameter value: + - class: arc:process parameter value + arc:has parameter: + - class: arc:protocol parameter + arc:has parameter name: + - class: arc:parameter name + arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146" + arc:term source REF: "PATO" + arc:annotation value: "temperature" + arc:has unit: + - class: arc:unit + arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027" + arc:term source REF: "UO" + arc:annotation value: "degree Celsius" + arc:value: 35 + - class: arc:process parameter value + arc:has parameter: + - class: arc:protocol parameter + arc:has parameter name: + - class: arc:parameter name + arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615" + arc:term source REF: "OBI" + arc:annotation value: "protein expression profiling assay" + arc:value: + - class: arc:ontology annotation + arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027" + arc:term source REF: "BAO" + arc:annotation value: "shotgun MS protein profiling assay" $namespaces: