From a45c483420880d4a08a85ca9603614e47abb4ecc Mon Sep 17 00:00:00 2001
From: Heinrich Lukas Weil <hl.weil@t-online.de>
Date: Fri, 12 Jan 2024 11:29:36 +0100
Subject: [PATCH] add isa process information to TurboIDSampleARC.cwl
---
workflows/EvalTurboID/TurboIDSampleArc.cwl | 43 +++++++++++++++++++++-
1 file changed, 42 insertions(+), 1 deletion(-)
diff --git a/workflows/EvalTurboID/TurboIDSampleArc.cwl b/workflows/EvalTurboID/TurboIDSampleArc.cwl
index cc02497..6585f1f 100644
--- a/workflows/EvalTurboID/TurboIDSampleArc.cwl
+++ b/workflows/EvalTurboID/TurboIDSampleArc.cwl
@@ -47,6 +47,7 @@ outputs:
outputBinding:
glob: $(runtime.outdir)/$(inputs.runID)
+
arc:performer:
- class: arc:Person
arc:first name: "David"
@@ -58,7 +59,47 @@ arc:performer:
arc:term accession: "https://credit.niso.org/contributor-roles/formal-analysis/"
arc:annotation value: "Formal analysis"
-
+arc:has process sequence:
+ - class: arc:process sequence
+ arc:name: "MassSpectrometry"
+ arc:has input:
+ - class: arc:sample
+ arc:name: "PR135_01"
+ - class: arc:sample
+ arc:name: "PR135_02"
+ arc:has output:
+ - class: arc:data
+ arc:name: "20220531TRR3R135001"
+ - class: arc:data
+ arc:name: "20220531TRR3R135003"
+ arc:has parameter value:
+ - class: arc:process parameter value
+ arc:has parameter:
+ - class: arc:protocol parameter
+ arc:has parameter name:
+ - class: arc:parameter name
+ arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146"
+ arc:term source REF: "PATO"
+ arc:annotation value: "temperature"
+ arc:has unit:
+ - class: arc:unit
+ arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027"
+ arc:term source REF: "UO"
+ arc:annotation value: "degree Celsius"
+ arc:value: 35
+ - class: arc:process parameter value
+ arc:has parameter:
+ - class: arc:protocol parameter
+ arc:has parameter name:
+ - class: arc:parameter name
+ arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615"
+ arc:term source REF: "OBI"
+ arc:annotation value: "protein expression profiling assay"
+ arc:value:
+ - class: arc:ontology annotation
+ arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027"
+ arc:term source REF: "BAO"
+ arc:annotation value: "shotgun MS protein profiling assay"
$namespaces:
--
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