diff --git a/runs/TurboIDSampleArc.yml b/runs/TurboIDSampleArc.yml index 6fbdbd4e677a1da1d11dd99cf91ca89a96230890..e516cc6419fff96438e1d7d23507c3645cf27c19 100644 --- a/runs/TurboIDSampleArc.yml +++ b/runs/TurboIDSampleArc.yml @@ -7,74 +7,14 @@ input: runID: test -arc:has measurement type: - - class: arc:measurement type - arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0023015" - arc:term source REF: "OMIT" - arc:annotation value: "Proteomics" - - -arc:has technology type: - - class: arc:technology type - arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0013943" - arc:term source REF: "OMIT" - arc:annotation value: "Mass Spectrometry" - -arc:technology platform: SCIEX - -arc:performer: - - class: arc:Person - arc:first name: "David" - arc:last name: "Zimmer" - arc:email: "d_zimmer@rptu.de" - arc:affiliation: "RPTU Kaiserslautern/Landau" - arc:has role: - - class: arc:role - arc:term accession: "https://credit.niso.org/contributor-roles/formal-analysis/" - arc:annotation value: "Formal analysis" - arc:has process sequence: - class: arc:process sequence - arc:name: "MassSpectrometry" arc:has input: - - class: arc:sample - arc:name: "PR135_01" - - class: arc:sample - arc:name: "PR135_02" - arc:has output: - class: arc:data - arc:name: "20220531TRR3R135001" + arc:name: "./arc/assays/MSEval/dataset/TEF_PSBQ_LON_MS264DDAfs_combined_protein.tsv" + arc:has output: - class: arc:data - arc:name: "20220531TRR3R135003" - arc:has parameter value: - - class: arc:process parameter value - arc:has parameter: - - class: arc:protocol parameter - arc:has parameter name: - - class: arc:parameter name - arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146" - arc:term source REF: "PATO" - arc:annotation value: "temperature" - arc:has unit: - - class: arc:unit - arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027" - arc:term source REF: "UO" - arc:annotation value: "degree Celsius" - arc:value: 35 - - class: arc:process parameter value - arc:has parameter: - - class: arc:protocol parameter - arc:has parameter name: - - class: arc:parameter name - arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615" - arc:term source REF: "OBI" - arc:annotation value: "protein expression profiling assay" - arc:value: - - class: arc:ontology annotation - arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027" - arc:term source REF: "BAO" - arc:annotation value: "shotgun MS protein profiling assay" - + arc:name: "./arc/runs/test" $namespaces: arc: https://github.com/nfdi4plants/ARC_ontology diff --git a/workflows/EvalTurboID/TurboIDSampleArc.cwl b/workflows/EvalTurboID/TurboIDSampleArc.cwl index 6c03d20b7d63012f41ce64985520ed5827247637..6807a03c63dfa8249bd88c3bb9ab195a02e12364 100644 --- a/workflows/EvalTurboID/TurboIDSampleArc.cwl +++ b/workflows/EvalTurboID/TurboIDSampleArc.cwl @@ -56,16 +56,6 @@ arc:performer: arc:has process sequence: - class: arc:process sequence arc:name: "TurboID" - arc:has input: - - class: arc:sample - arc:name: "PR135_01" - - class: arc:sample - arc:name: "PR135_02" - arc:has output: - - class: arc:data - arc:name: "20220531TRR3R135001" - - class: arc:data - arc:name: "20220531TRR3R135003" arc:has parameter value: - class: arc:process parameter value arc:has parameter: